CsaV3_1G029370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029370
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr1: 16177673 .. 16178733 (-)
RNA-Seq ExpressionCsaV3_1G029370
SyntenyCsaV3_1G029370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACACATAACAAAACAAAACAAAAAACAAAGCATTTCATCTCTCAAATTCTGGTTCCCGTTAAAAAGTAGCCTCTTCAATTTTGGTTGAATCCCCTTAGCAATCAAACAAATATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAAATCTTAAACTATAATTAGTGATAATATATGAAATTAATTAAGGATTATCATCGTCTTTTACTTTTGCAAATAGATGAACAAAAGCTATAGATAATGAATCCTTAATTGTATTTTCCTGCTTTGTTCTTTTAGTCTAGCTTTTATATATATACATATATGAAGTCCGAATAAAATGTTGTTCCTATTAAGTGTTAAATTAAACTATGGGTATCCATAATGGATTGAAAATGTATAATAACATTTTAAAAAATTTAAAATTATATTGTCGATGTTGTTAGGAGTATGTAAAAAAGAATTGTTAGTTCCATGAAAAAATACTATCCTGATTTGATTGTTCAATTAAGTGGATTCTTGACCGATAAATGGTTATTAAATATTGATATTAATATCATATGAAATTTCTATTTTAAGGATGTATGAAAAGATATATATGATAAAACATACCATCCAACTAATCTCATCACCCTCCTCTCGGCCACACCACGAAGGCAGTGAATCTGAAGCTGGTTCATATGCTGGTTGTACAAGGTGCAGTTCCGATAACCATTAAGCTCCTTAAGGCTCTGGCGGTTGTGAGAGACCTAACTGTTTTTGT

mRNA sequence

ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Coding sequence (CDS)

ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Protein sequence

MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN*
Homology
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_011656035.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_019849 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-42
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 117
           GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN
Sbjct: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 116

BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-28
Identity = 102/138 (73.91%), Postives = 106/138 (76.81%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIR VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTG+GLGL GSGSG GSG 
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSGSSSASLSHS----------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE-- 117
           GS S+S+S S S                SYAGS  GSGSGRNRNGGSGSGSG GNGGE  
Sbjct: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120

BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASLSHS--------------SYAGSYVGSGSGRNRNGGSGSGSGRGN--- 117
           GSGSGSGSSSAS SHS              SYAGSY GSGSGRNRNGGSGSGSG G+   
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 101/151 (66.89%), Postives = 106/151 (70.20%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASLSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRG 117
           GSGSGSGSSSAS SHS                  SYAGS  GSGSGRNRNGGSGSGSG G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 90/142 (63.38%), Postives = 98/142 (69.01%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASLSHS--------------------SYAGSYVGSGSGRNRNGGSGSGSGRG-- 114
           GSGS S S S S                    SYAGS  GSGSG NRNGGSGSGSG G  
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.2e-42
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 117
           GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN
Sbjct: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 116

BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 102/138 (73.91%), Postives = 106/138 (76.81%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIR VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTG+GLGL GSGSG GSG 
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGP 60

Query: 61  GSGSSSASLSHS----------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE-- 117
           GS S+S+S S S                SYAGS  GSGSGRNRNGGSGSGSG GNGGE  
Sbjct: 61  GSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGY 120

BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASLSHS--------------SYAGSYVGSGSGRNRNGGSGSGSGRGN--- 117
           GSGSGSGSSSAS SHS              SYAGSY GSGSGRNRNGGSGSGSG G+   
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 90/142 (63.38%), Postives = 98/142 (69.01%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASLSHS--------------------SYAGSYVGSGSGRNRNGGSGSGSGRG-- 114
           GSGS S S S S                    SYAGS  GSGSG NRNGGSGSGSG G  
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 90/162 (55.56%), Postives = 98/162 (60.49%), Query Frame = 0

Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASLSHS----------------------------------------SYAGSYVG 114
           GSGS S S S S                                        SYAGS  G
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAG 120

BLAST of CsaV3_1G029370 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-15
Identity = 77/148 (52.03%), Postives = 90/148 (60.81%), Query Frame = 0

Query: 6   SVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSG-- 65
           S+ ++T +L  SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG+G+GSGSG  
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  -------SSSASLSHS------------SYAGSYVG------SGSGRNR--------NGG 114
                  SSS+S S S            SYAGS+ G      SGSGR R         GG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

BLAST of CsaV3_1G029370 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 12  FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGMGLGLG---GSGSGSGSGSGSG 71
           FLLG+ VI     ++ESR+ARKDLG+DLGG+G+G+G G+G+GLG   GSG+G+GSGSGSG
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNG 101
           S S+S S SS + S  GSG     + GS +GS  G+G
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSG 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011656035.14.5e-42100.00glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypoth... [more]
XP_008443812.13.7e-2873.91PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
XP_022921884.12.6e-2667.35glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... [more]
XP_038879815.11.0e-2566.89putative per-hexamer repeat protein 5 [Benincasa hispida][more]
XP_022921883.11.1e-2163.38putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LZ572.2e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1[more]
A0A1S3B8Y81.8e-2873.91putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1E1T01.3e-2667.35glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1E5215.5e-2263.38putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... [more]
A0A6J1E2L11.2e-1955.56cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
Match NameE-valueIdentityDescription
AT4G30460.12.9e-1552.03glycine-rich protein [more]
AT4G30450.12.8e-1055.67glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..95
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 1..73
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029370.1CsaV3_1G029370.1mRNA