CsaV3_1G029370 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAACACATAACAAAACAAAACAAAAAACAAAGCATTTCATCTCTCAAATTCTGGTTCCCGTTAAAAAGTAGCCTCTTCAATTTTGGTTGAATCCCCTTAGCAATCAAACAAATATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAAATCTTAAACTATAATTAGTGATAATATATGAAATTAATTAAGGATTATCATCGTCTTTTACTTTTGCAAATAGATGAACAAAAGCTATAGATAATGAATCCTTAATTGTATTTTCCTGCTTTGTTCTTTTAGTCTAGCTTTTATATATATACATATATGAAGTCCGAATAAAATGTTGTTCCTATTAAGTGTTAAATTAAACTATGGGTATCCATAATGGATTGAAAATGTATAATAACATTTTAAAAAATTTAAAATTATATTGTCGATGTTGTTAGGAGTATGTAAAAAAGAATTGTTAGTTCCATGAAAAAATACTATCCTGATTTGATTGTTCAATTAAGTGGATTCTTGACCGATAAATGGTTATTAAATATTGATATTAATATCATATGAAATTTCTATTTTAAGGATGTATGAAAAGATATATATGATAAAACATACCATCCAACTAATCTCATCACCCTCCTCTCGGCCACACCACGAAGGCAGTGAATCTGAAGCTGGTTCATATGCTGGTTGTACAAGGTGCAGTTCCGATAACCATTAAGCTCCTTAAGGCTCTGGCGGTTGTGAGAGACCTAACTGTTTTTGT ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN* Homology
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_011656035.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_019849 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 4.5e-42 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]) HSP 1 Score: 135.2 bits (339), Expect = 3.7e-28 Identity = 102/138 (73.91%), Postives = 106/138 (76.81%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26 Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida]) HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25 Identity = 101/151 (66.89%), Postives = 106/151 (70.20%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata]) HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21 Identity = 90/142 (63.38%), Postives = 98/142 (69.01%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.2e-42 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28 Identity = 102/138 (73.91%), Postives = 106/138 (76.81%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26 Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22 Identity = 90/142 (63.38%), Postives = 98/142 (69.01%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. ExPASy TrEMBL
Match: A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19 Identity = 90/162 (55.56%), Postives = 98/162 (60.49%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein ) HSP 1 Score: 79.0 bits (193), Expect = 2.9e-15 Identity = 77/148 (52.03%), Postives = 90/148 (60.81%), Query Frame = 0
BLAST of CsaV3_1G029370 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein ) HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10 Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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