CsaV3_1G029110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029110
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 15914737 .. 15915036 (-)
RNA-Seq ExpressionCsaV3_1G029110
SyntenyCsaV3_1G029110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGA

mRNA sequence

ATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGA

Coding sequence (CDS)

ATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGA

Protein sequence

MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL*
Homology
BLAST of CsaV3_1G029110 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60
           MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS
Sbjct: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60

Query: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
           GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL
Sbjct: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of CsaV3_1G029110 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.7e-27
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0

Query: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGV 62
           AAIHRFLLP+ALISLLLFSESL AISS+DH Q+SNR GDK S TSL  KI  KRGVRSGV
Sbjct: 2   AAIHRFLLPLALISLLLFSESLAAISSTDHGQNSNRRGDKGSDTSLAGKIISKRGVRSGV 61

Query: 63  IAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
            AGRST+SSSA++ SSSFFNVGS+ICFNIAFV AMFL
Sbjct: 62  TAGRSTSSSSAQM-SSSFFNVGSLICFNIAFVFAMFL 97

BLAST of CsaV3_1G029110 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 9   LLPIALISLLLFSESLPAISSSDHIQD----------------SNRPGDKDSGTSLTEKI 68
           L PI LI LLL SES P +SS+D+ QD                 ++  DKD+G+SL EKI
Sbjct: 7   LFPITLICLLLLSESFP-VSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGSSLAEKI 66

Query: 69  SIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAM 98
           SIKRG RS VI G S+ SSS+RV     FN+ SVICF  AF  A+
Sbjct: 67  SIKRGARSAVIGGHSSISSSSRVPP---FNIASVICFVFAFAFAL 107

BLAST of CsaV3_1G029110 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60
           MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS
Sbjct: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60

Query: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
           GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL
Sbjct: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of CsaV3_1G029110 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.7e-27
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0

Query: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGV 62
           AAIHRFLLP+ALISLLLFSESL AISS+DH Q+SNR GDK S TSL  KI  KRGVRSGV
Sbjct: 2   AAIHRFLLPLALISLLLFSESLAAISSTDHGQNSNRRGDKGSDTSLAGKIISKRGVRSGV 61

Query: 63  IAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
            AGRST+SSSA++ SSSFFNVGS+ICFNIAFV AMFL
Sbjct: 62  TAGRSTSSSSAQM-SSSFFNVGSLICFNIAFVFAMFL 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65176.11.2e-40100.00hypothetical protein Csa_019975 [Cucumis sativus][more]
KAA0035100.17.7e-2780.41hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597... [more]
KAG6587814.15.5e-0949.52hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYV95.9e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1[more]
A0A5D3BCG43.7e-2780.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029110.1CsaV3_1G029110.1mRNA