CsaV3_1G028730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028730
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 15661347 .. 15661691 (+)
RNA-Seq ExpressionCsaV3_1G028730
SyntenyCsaV3_1G028730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

mRNA sequence

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Coding sequence (CDS)

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Protein sequence

MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH*
Homology
[Close]
BLAST of CsaV3_1G028730 vs. NCBI nr
Match: KGN65236.1 (hypothetical protein Csa_019862 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 6.3e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

[Close]
BLAST of CsaV3_1G028730 vs. NCBI nr
Match: PNT53049.1 (hypothetical protein POPTR_001G065500 [Populus trichocarpa] >RQP01741.1 hypothetical protein POPTR_017G004115 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 19 ILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYN 74
          ILS LG+ PH FA G+ PKGL+  +  V  YI   + +S+QCGTLV +  ILP N
Sbjct: 11 ILSTLGLSPHGFALGLYPKGLIPMEIFVHPYIPMILPISSQCGTLVVYPTILPSN 65

[Close]
BLAST of CsaV3_1G028730 vs. NCBI nr
Match: RQO89217.1 (hypothetical protein POPTR_004G109650 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 19 ILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYN 74
          ILS LG+ PH FA G+ PKGL+  +  V  YI   + +S+QCGTLV +  ILP N
Sbjct: 11 ILSTLGLSPHGFALGLYPKGLIPMEIFVHPYIPMILPISSQCGTLVVYPTILPSN 65

[Close]
BLAST of CsaV3_1G028730 vs. ExPASy TrEMBL
Match: A0A0A0LZ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G268300 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

[Close]
BLAST of CsaV3_1G028730 vs. ExPASy TrEMBL
Match: A0A2K2BTD7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G065500 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 19 ILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYN 74
          ILS LG+ PH FA G+ PKGL+  +  V  YI   + +S+QCGTLV +  ILP N
Sbjct: 11 ILSTLGLSPHGFALGLYPKGLIPMEIFVHPYIPMILPISSQCGTLVVYPTILPSN 65

[Close]
BLAST of CsaV3_1G028730 vs. ExPASy TrEMBL
Match: A0A3N7ET29 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G109650 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 19 ILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYN 74
          ILS LG+ PH FA G+ PKGL+  +  V  YI   + +S+QCGTLV +  ILP N
Sbjct: 11 ILSTLGLSPHGFALGLYPKGLIPMEIFVHPYIPMILPISSQCGTLVVYPTILPSN 65

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65236.16.3e-57100.00hypothetical protein Csa_019862 [Cucumis sativus][more]
PNT53049.16.2e-0450.91hypothetical protein POPTR_001G065500 [Populus trichocarpa] >RQP01741.1 hypothet... [more]
RQO89217.16.2e-0450.91hypothetical protein POPTR_004G109650 [Populus trichocarpa][more]
BLAST of CsaV3_1G028730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ253.0e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G268300 PE=4 SV=1[more]
A0A2K2BTD73.0e-0450.91Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G065500 PE=4 ... [more]
A0A3N7ET293.0e-0450.91Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G109650 PE=4 ... [more]
BLAST of CsaV3_1G028730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028730.1CsaV3_1G028730.1mRNA