CsaV3_1G028520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028520
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 15527192 .. 15527974 (-)
RNA-Seq ExpressionCsaV3_1G028520
SyntenyCsaV3_1G028520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAACTAAGTCCTCGTTTTTTTCCCATTTTGTTTTCATCTACGACTTTAACAAAGCTATTACATTACATTATTGTCTTCATTTGGGAACCCCATTTCTCTTTTTAGTTACCTAATCCCACACAACTCCTCAACCCTTCCAATTTGGACATTCAAATTTCATATATTCATCCTTTGCTCTGTTTTCAAGAACAAGGAAACAGAGGAAGAATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAGAATTAGTAATTGTTTTTTCTTTTTCTTTTTTAATGTTTTTAATGTGTTTTGAGATCGTCTTCTCTGTTTTTGTTCCTTTTCTTGTTGTACTCTTCAGCTGCTTGTTATGTACAAATGGGAATGGAACTTATCTTGACAAGGAAAGGCAAAGTCTTTTCTTGCTGAGAGTTTGTGTAGTTCGATTATTATTAGTGTAATATTAATATGAAATCAACGGAGATTTGAATGGTGCAGCATTAATGTTCTTCTAAGAAAAAAAATACCTCTGAG

mRNA sequence

ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG

Coding sequence (CDS)

ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG

Protein sequence

MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS*
Homology
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 8.5e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60
           MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL
Sbjct: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60

Query: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 101
           KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS
Sbjct: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100

BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0

Query: 1   MEKMGG-VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSF 60
           MEKMGG VGS VFDGSLS+Q FLIERRPYHRNCGCALHDDR RNGAACSHA+K KNSVSF
Sbjct: 58  MEKMGGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSF 117

Query: 61  LKTQKCPKTSLQILPS----SSRQFVNSESPPPPLHFVYQFSTSS 101
           LKTQKCP TSLQIL S    SSRQFVNSESP     FV QFSTSS
Sbjct: 118 LKTQKCPITSLQILRSSSKVSSRQFVNSESP----SFVSQFSTSS 158

BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S++ FLIERRPYHRNCGCALH  R++NG  C HAL S  SVSFLK
Sbjct: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALH-HRLKNG-GCPHALNS--SVSFLK 60

Query: 64 TQKCPKT-SLQILPSSSRQFVNSESPPPPLH 92
           +K   T  LQI   S  +F    +P   LH
Sbjct: 61 ARKWTDTCRLQIQAMS--EFSAHAAPTSLLH 85

BLAST of CsaV3_1G028520 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALH-HRAKNG-GCPHALNT--SVSFLK 60

Query: 64 TQKCPKT-SLQILPSSSRQFVNSESPPPPLH 92
           +K   T  LQI   S  +F    +P   LH
Sbjct: 61 ARKWTDTCRLQIQAMS--EFSAHAAPTSLLH 85

BLAST of CsaV3_1G028520 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALH-HRAKNG-GCPHALNT--SVSFLK 60

Query: 64 TQKCPKT-SLQILPSSSRQFVNSESPPPPLH 92
           +K   T  LQI   S  +F    +P   LH
Sbjct: 61 ARKWTDTCRLQIQAMS--EFSAHAAPTSLLH 85

BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60
           MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL
Sbjct: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60

Query: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 101
           KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS
Sbjct: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100

BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0

Query: 1   MEKMGG-VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSF 60
           MEKMGG VGS VFDGSLS+Q FLIERRPYHRNCGCALHDDR RNGAACSHA+K KNSVSF
Sbjct: 58  MEKMGGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSF 117

Query: 61  LKTQKCPKTSLQILPS----SSRQFVNSESPPPPLHFVYQFSTSS 101
           LKTQKCP TSLQIL S    SSRQFVNSESP     FV QFSTSS
Sbjct: 118 LKTQKCPITSLQILRSSSKVSSRQFVNSESP----SFVSQFSTSS 158

BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A2P6RIH6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086601 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 5  GGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQK 64
          G +  RVF+GSLS+Q   IERRPYH+NC CALH  +     ACS A   + ++SF K Q 
Sbjct: 8  GMMFQRVFEGSLSMQDTEIERRPYHKNCNCALHKSK---RGACSDACPQQRNISFPKKQS 67

Query: 65 CPKTSLQILPSSSRQFVNSESPP 88
              SL +  ++S+    S +PP
Sbjct: 68 WTDGSLCMSATTSK----SSTPP 83

BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A445A3M3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066262 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 6  GVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKC 65
          G+   +F+GS+S     +ERRPYHRNC CALH      G AC+H L   N++S+   +  
Sbjct: 9  GLFRPIFEGSISGYDHCVERRPYHRNCSCALHSKSRNGGGACTHKLPRGNNISYPMRRAW 68

Query: 66 PKTSLQILPSSSRQFVNSESP 87
           + SL I+ +SS     S SP
Sbjct: 69 SEGSL-IMVASSVHSSPSSSP 88

BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A7J7D6U8 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00091 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 11 VFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKCPKTSL 70
          VFDGS+S+Q   IERRPYHRNCGCALH+ +      C+++   + ++SF K Q    ++ 
Sbjct: 13 VFDGSISIQDKEIERRPYHRNCGCALHNTK----GVCANSCPQQRTISFPKKQSWTNSAF 72

Query: 71 QILPS--SSRQFVN 83
           I  S  SSR  +N
Sbjct: 73 CIEASTVSSRSSLN 82

BLAST of CsaV3_1G028520 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.5e-07
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 4  MGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQ 63
          M G+   +F+G +S     I+RRPYH+NCGCALH +R R G + +     ++ V     Q
Sbjct: 6  MDGIFRNIFEGCISSCDSSIQRRPYHKNCGCALH-ERSRGGGSATPCRHGRSEVVMFPIQ 65

Query: 64 K 65
          +
Sbjct: 66 R 65

BLAST of CsaV3_1G028520 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0

Query: 6  GVGSRVFDGSLSLQSFLIERRPYHRNCGCALHD 39
          G+   +F+G +S     IERRPYH+NCGCALHD
Sbjct: 5  GIFRSIFEGCISGLDSAIERRPYHKNCGCALHD 37

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65216.18.5e-50100.00hypothetical protein Csa_019753 [Cucumis sativus][more]
KAA0050036.13.5e-3581.90hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364... [more]
KAG6587851.16.0e-1156.04hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023531633.13.9e-1054.95uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531631.13.9e-1054.95uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LZ024.1e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1[more]
A0A5A7U7811.7e-3581.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P6RIH69.6e-0743.37Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086601 PE=4... [more]
A0A445A3M31.6e-0640.74Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066262 PE=4 SV=1[more]
A0A7J7D6U82.1e-0644.59Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00091 ... [more]
Match NameE-valueIdentityDescription
AT5G35110.19.5e-0737.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46490.13.6e-0657.58unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 10..98
NoneNo IPR availablePANTHERPTHR35121:SF8SUBFAMILY NOT NAMEDcoord: 10..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028520.1CsaV3_1G028520.1mRNA