CsaV3_1G028520 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAACTAAGTCCTCGTTTTTTTCCCATTTTGTTTTCATCTACGACTTTAACAAAGCTATTACATTACATTATTGTCTTCATTTGGGAACCCCATTTCTCTTTTTAGTTACCTAATCCCACACAACTCCTCAACCCTTCCAATTTGGACATTCAAATTTCATATATTCATCCTTTGCTCTGTTTTCAAGAACAAGGAAACAGAGGAAGAATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAGAATTAGTAATTGTTTTTTCTTTTTCTTTTTTAATGTTTTTAATGTGTTTTGAGATCGTCTTCTCTGTTTTTGTTCCTTTTCTTGTTGTACTCTTCAGCTGCTTGTTATGTACAAATGGGAATGGAACTTATCTTGACAAGGAAAGGCAAAGTCTTTTCTTGCTGAGAGTTTGTGTAGTTCGATTATTATTAGTGTAATATTAATATGAAATCAACGGAGATTTGAATGGTGCAGCATTAATGTTCTTCTAAGAAAAAAAATACCTCTGAG ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS* Homology
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus]) HSP 1 Score: 206.8 bits (525), Expect = 8.5e-50 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa]) HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35 Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11 Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10 Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10 Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35 Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A2P6RIH6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086601 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 9.6e-07 Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A445A3M3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066262 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06 Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. ExPASy TrEMBL
Match: A0A7J7D6U8 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00091 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06 Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 9.5e-07 Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 0
BLAST of CsaV3_1G028520 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06 Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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