CsaV3_1G028320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028320
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 15370231 .. 15371089 (+)
RNA-Seq ExpressionCsaV3_1G028320
SyntenyCsaV3_1G028320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACACACAGCTTCCCCCCATATCTAATTCAAATCCTTCTCTTAACCATCAATTGAAATCATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGATCGAATTCTTATGCTAAAGGTTGTTTAATTGAGTTAATTGGATCGTAATGAATAAGAGAAAATTATCATTTTGTTACTTACATTAGTAGTATTTTATAAATTTAAGGAAGAGTGGATTTTGTTTCCATTTGAAATATGAGAACTAGTATTTGTTTTTCTTTTTACTTTTGTCAAAAGGCCATTTAATTTTGATCTTTATTTTTCTTGTTGTCTCTGCTTGTAAGGGAGAGGCAAATTTCATCCACATTTACAAAGACCATTACCATGGCCTTCTTAAGATTTTACTGTTTGGGTTACAACGTTTGATTACCCACATGTTCTTCGCGAATGATAATCTAAAAGAGTTAACTGAGGAATTTTGGATTTTAATTAAGCAATATTGCGAGGAAATTATATGAGTTTGGTTTCAGGGTAAAATGTAACTTTGAAGAAATCAAGTTTGGGTGCTGGCCGGTATTTTAATGACACAGGTGGTGATGTCTTTTG

mRNA sequence

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Protein sequence

MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA*
Homology
BLAST of CsaV3_1G028320 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_019746 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 5.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

BLAST of CsaV3_1G028320 vs. NCBI nr
Match: KAA0050080.1 (hypothetical protein E6C27_scaffold675G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 0

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           M AS+K+P+IFLVCIAIL LPVM RT TTLDQF  KD ASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MAASMKVPLIFLVCIAILTLPVMARTVTTLDQFVMKDFASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           SMPPHPSCCRAILKLNDCNPE YKDVPS DK+L+KKIC LWG
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEAYKDVPSADKELVKKICALWG 102

BLAST of CsaV3_1G028320 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61
           +AS+KLP++F VC+AILA+  +  T      D F+ ++++ + CT F  EATKC+IDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60

Query: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of CsaV3_1G028320 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0

Query: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61
           +AS+KLP++FLVCIAILA+  M  T      D F+ ++ + + CT F  EAT CM+DVMK
Sbjct: 1   MASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMK 60

Query: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           N++ PHPSCC+A  KLNDC+ E  K +PS D  LIK IC LWG
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 103

BLAST of CsaV3_1G028320 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0

Query: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61
           +AS+KLP++F VC+AILA+  +  T      D F+ + ++ + CT F  EATKC+IDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMK 60

Query: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of CsaV3_1G028320 vs. ExPASy TrEMBL
Match: A0A0A0LTE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

BLAST of CsaV3_1G028320 vs. ExPASy TrEMBL
Match: A0A5A7U471 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00640 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 0

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           M AS+K+P+IFLVCIAIL LPVM RT TTLDQF  KD ASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MAASMKVPLIFLVCIAILTLPVMARTVTTLDQFVMKDFASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           SMPPHPSCCRAILKLNDCNPE YKDVPS DK+L+KKIC LWG
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEAYKDVPSADKELVKKICALWG 102

BLAST of CsaV3_1G028320 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61
           +AS+KLP++F VC+AILA+  +  T      D F+ ++++ + CT F  EATKC+IDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 60

Query: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of CsaV3_1G028320 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0

Query: 2   VASLKLPIIFLVCIAILALPVMTRT--TTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 61
           +AS+KLP++F VC+AILA+  +  T      D F+ + ++ + CT F  EATKC+IDVMK
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMK 60

Query: 62  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           N++ PHPSCC+A  KLNDC+PE  K +PS D  LIK IC LWG
Sbjct: 61  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of CsaV3_1G028320 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-17
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 3   ASLKLPIIFLVCIAILALPVMTRTTTTLDQFST-KDVASVNCTVFTFEATKCMIDVMKNS 62
           A  KLP++ LVCIAILA  V  R T       T +D +   C  F  +ATKC+IDV+KN+
Sbjct: 5   AITKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNA 64

Query: 63  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 103
           + PHPSCC AI +L+DC+ +  KD+PS+D  L+K IC  WG
Sbjct: 65  VAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWG 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65195.15.2e-50100.00hypothetical protein Csa_019746 [Cucumis sativus][more]
KAA0050080.12.3e-4285.29hypothetical protein E6C27_scaffold675G00640 [Cucumis melo var. makuwa][more]
TYK10330.17.8e-2253.40hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa][more]
KAE8653021.11.0e-2154.37hypothetical protein Csa_004567 [Cucumis sativus][more]
KAA0050078.11.7e-2153.40hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTE12.5e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
A0A5A7U4711.1e-4285.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CG413.8e-2253.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4838.4e-2253.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CFS64.8e-1749.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028320.1CsaV3_1G028320.1mRNA