CsaV3_1G027930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G027930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 14844795 .. 14844995 (+)
RNA-Seq Expression	CsaV3_1G027930
Synteny	CsaV3_1G027930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

mRNA sequence

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

Coding sequence (CDS)

CATCCAGTGAGAAAATTACGCAAGCTCTATATCTGTAACAGGCAGCAAAATCCCATCAAAATTCAGTCCATCAAAGTACCTCCCAGTAGTTGCACAGAAGCAATAGAAGTTAGGAGCAAAGGCATCGCCGGCGAAGGAAAGAAGAAAAAGGAATTGGATAAGAAGGAATTGAAAAATGGAAGAATGATGGAGAGAAATCCG

Protein sequence

HPVRKLRKLYICNRQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP

Homology

[Close]

BLAST of CsaV3_1G027930 vs. NCBI nr
Match: KAE8653007.1 (hypothetical protein Csa_004574, partial [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  HPVRKLRKLYICNRQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNG 60
          HPVRKLRKLYICNRQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNG
Sbjct: 1  HPVRKLRKLYICNRQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNG 60

Query: 61 RMMERNP 68
          RMMERNP
Sbjct: 61 RMMERNP 67

[Close]

BLAST of CsaV3_1G027930 vs. ExPASy TrEMBL
Match: A0A0A0LT79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G225400 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 68
          RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP
Sbjct: 14 RQQNPIKIQSIKVPPSSCTEAIEVRSKGIAGEGKKKKELDKKELKNGRMMERNP 67

The following BLAST results are available for this feature:

BLAST of CsaV3_1G027930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653007.1	1.4e-27	100.00	hypothetical protein Csa_004574, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G027930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT79	1.5e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G225400 PE=4 SV=1	[more]

BLAST of CsaV3_1G027930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G027930.1	CsaV3_1G027930.1	mRNA