CsaV3_1G026640 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGSX Homology
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAE8652991.1 (hypothetical protein Csa_023491, partial [Cucumis sativus]) HSP 1 Score: 107.1 bits (266), Expect = 4.7e-20 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus]) HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14 Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: TYK18916.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]) HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13 Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]) HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3D5W5 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001320 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13 Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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