CsaV3_1G026640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G026640
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1: 14417131 .. 14417284 (+)
RNA-Seq ExpressionCsaV3_1G026640
SyntenyCsaV3_1G026640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG

mRNA sequence

ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG

Coding sequence (CDS)

ATGGCTGCCATGATTGCTGCTCCTGATCTGAATGTTGATAGTAATTGGTACTCTGACACTGGAGCCACAAATCATTTAACACAGAGCTTGAGCAACCTATCCCCTAGAGTTGATTATAATGGAGGAAATCATATATATGCAGCAAATGGGTCAG

Protein sequence

MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGSX
Homology
BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAE8652991.1 (hypothetical protein Csa_023491, partial [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 4.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS
Sbjct: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 51

BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          MAAMIAAPD+N+DSNWY D+GATNHLT SLSNLS   DYNGGN IYA NGS
Sbjct: 1  MAAMIAAPDMNIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGS 51

BLAST of CsaV3_1G026640 vs. NCBI nr
Match: TYK18916.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          M+AM+A PDLN+DSNWY+D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 42 MSAMVATPDLNIDSNWYTDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGS 92

BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          M+AM+A PDLN+DSNWY D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 42 MSAMVATPDLNIDSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGS 92

BLAST of CsaV3_1G026640 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
           M+AM+AA DLN+DSNWY D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 333 MSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGS 383

BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3D5W5 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001320 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          M+AM+A PDLN+DSNWY+D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 42 MSAMVATPDLNIDSNWYTDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGS 92

BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1  MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
          M+AM+A PDLN+DSNWY D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 42 MSAMVATPDLNIDSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGS 92

BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
           M+AM+AA DLN+DSNWY D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 333 MSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGS 383

BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
           M+AM+AA DLN+DSNWY D+GATNHLT SLSNLS   +Y GGN IYAANGS
Sbjct: 333 MSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGS 383

BLAST of CsaV3_1G026640 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1   MAAMIAAPDLNVDSNWYSDTGATNHLTQSLSNLSPRVDYNGGNHIYAANGS 52
           M+AM+A+ DLNVDSNWY + GATNHL  +LSNLS R +Y GG+HIYA NGS
Sbjct: 177 MSAMVASYDLNVDSNWYPNLGATNHLIHNLSNLSTRSEYGGGHHIYAPNGS 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652991.14.7e-20100.00hypothetical protein Csa_023491, partial [Cucumis sativus][more]
KAE8647228.11.7e-1480.39hypothetical protein Csa_018955 [Cucumis sativus][more]
TYK18916.14.3e-1374.51retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
KAA0067212.17.3e-1374.51retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
KAA0048297.16.2e-1274.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D5W52.1e-1374.51Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5A7VFQ63.6e-1374.51Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5A7U2333.0e-1274.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH973.0e-1274.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3B9Z05.7e-1168.63Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G026640.1CsaV3_1G026640.1mRNA