CsaV3_1G025450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G025450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	1,3-beta-glucan synthase
Location	chr1: 14116388 .. 14116548 (-)
RNA-Seq Expression	CsaV3_1G025450
Synteny	CsaV3_1G025450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCAATAGCATTGGATATGGCTGTTGAATTTCGATCCAGAGATTCTGACCTATGGAAGCACATTTATGCAGATGAGTACATGAAATGTGAAGTGATAGAGTGTTGTGAATCTTTAAAAAATGTCCTGAATGTTCTGGCAGTTGGAGAAAATGAGAAAAG

mRNA sequence

ATTCCAATAGCATTGGATATGGCTGTTGAATTTCGATCCAGAGATTCTGACCTATGGAAGCACATTTATGCAGATGAGTACATGAAATGTGAAGTGATAGAGTGTTGTGAATCTTTAAAAAATGTCCTGAATGTTCTGGCAGTTGGAGAAAATGAGAAAAG

Coding sequence (CDS)

ATTCCAATAGCATTGGATATGGCTGTTGAATTTCGATCCAGAGATTCTGACCTATGGAAGCACATTTATGCAGATGAGTACATGAAATGTGAAGTGATAGAGTGTTGTGAATCTTTAAAAAATGTCCTGAATGTTCTGGCAGTTGGAGAAAATGAGAAAAG

Protein sequence

IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEKX

Homology

[Close]

BLAST of CsaV3_1G025450 vs. NCBI nr
Match: XP_031736499.1 (callose synthase 5-like isoform X2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
          IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK
Sbjct: 34 IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 86

[Close]

BLAST of CsaV3_1G025450 vs. NCBI nr
Match: XP_031739309.1 (uncharacterized protein LOC116402939 isoform X1 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
          IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK
Sbjct: 40 IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 92

[Close]

BLAST of CsaV3_1G025450 vs. NCBI nr
Match: XP_031743825.1 (callose synthase 5-like isoform X2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
          IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK
Sbjct: 25 IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 77

[Close]

BLAST of CsaV3_1G025450 vs. NCBI nr
Match: XP_031736507.1 (callose synthase 5-like isoform X5 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
          IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK
Sbjct: 34 IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 86

[Close]

BLAST of CsaV3_1G025450 vs. NCBI nr
Match: XP_031739314.1 (callose synthase 1-like isoform X4 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
          IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK
Sbjct: 40 IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 92

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot
Match: Q3B724 (Callose synthase 5 OS=Arabidopsis thaliana OX=3702 GN=CALS5 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-17
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA +FR+RDSDLWK I ADEYMKC VIEC ES K+VL+ L +GENEK
Sbjct: 858 IPIALDMAAQFRTRDSDLWKRICADEYMKCAVIECYESFKHVLHTLVIGENEK 910

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot
Match: Q9SL03 (Callose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=CALS2 PE=2 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-08
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 861 IPIALDMAKDSNGKDRELTKRLSVDSYMTCAVRECYASFKNLINFLVVGERE 912

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot
Match: Q9AUE0 (Callose synthase 1 OS=Arabidopsis thaliana OX=3702 GN=CALS1 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-08
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 861 IPIALDMAKDSNGKDRELKKRLAVDSYMTCAVRECYASFKNLINYLVVGERE 912

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot
Match: Q9LXT9 (Callose synthase 3 OS=Arabidopsis thaliana OX=3702 GN=CALS3 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-07
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA +   +D +L K I +D YMKC V EC  S KN++  +  G  EK
Sbjct: 867 IPIALDMAKDSNGKDRELKKRIESDTYMKCAVRECYASFKNIIKFVVQGNREK 919

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot
Match: Q9LUD7 (Putative callose synthase 8 OS=Arabidopsis thaliana OX=3702 GN=CALS8 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-05
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 4   ALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           AL +A +F  +D  L++ I  DEYM   V EC ESLK +L +L VG+ EK
Sbjct: 909 ALSIAKDFVGKDEVLYRRIRKDEYMYYAVKECYESLKYILQILVVGDLEK 958

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL
Match: A0A6J1L2I2 (1,3-beta-glucan synthase OS=Cucurbita maxima OX=3661 GN=LOC111499808 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA EFRSRDSDLWK I ADEYMKC VIEC ES KNVLNVL VGENEK
Sbjct: 855 IPIALDMAAEFRSRDSDLWKRICADEYMKCAVIECYESFKNVLNVLVVGENEK 907

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL
Match: A0A5D3BRP0 (1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00640 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA EFRSRDSDLWK I ADEYMKC VIEC ES KNVLNVL VGENEK
Sbjct: 851 IPIALDMAAEFRSRDSDLWKRICADEYMKCAVIECYESFKNVLNVLVVGENEK 903

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL
Match: A0A5A7TH37 (1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold703G00330 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA EFRSRDSDLWK I ADEYMKC VIEC ES KNVLNVL VGENEK
Sbjct: 850 IPIALDMAAEFRSRDSDLWKRICADEYMKCAVIECYESFKNVLNVLVVGENEK 902

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL
Match: A0A5A7TBD2 (1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold703G00290 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA EFRSRDSDLWK I ADEYMKC VIEC ES KNVLNVL VGENEK
Sbjct: 867 IPIALDMAAEFRSRDSDLWKRICADEYMKCAVIECYESFKNVLNVLVVGENEK 919

[Close]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL
Match: A0A5D3BQP7 (1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00680 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA EFRSRDSDLWK I ADEYMKC VIEC ES KNVLNVL VGENEK
Sbjct: 846 IPIALDMAAEFRSRDSDLWKRICADEYMKCAVIECYESFKNVLNVLVVGENEK 898

[Close]

BLAST of CsaV3_1G025450 vs. TAIR 10
Match: AT2G13680.1 (callose synthase 5 )

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENEK 54
           IPIALDMA +FR+RDSDLWK I ADEYMKC VIEC ES K+VL+ L +GENEK
Sbjct: 858 IPIALDMAAQFRTRDSDLWKRICADEYMKCAVIECYESFKHVLHTLVIGENEK 910

[Close]

BLAST of CsaV3_1G025450 vs. TAIR 10
Match: AT2G31960.1 (glucan synthase-like 3 )

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-09
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 861 IPIALDMAKDSNGKDRELTKRLSVDSYMTCAVRECYASFKNLINFLVVGERE 912

[Close]

BLAST of CsaV3_1G025450 vs. TAIR 10
Match: AT2G31960.2 (glucan synthase-like 3 )

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-09
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 861 IPIALDMAKDSNGKDRELTKRLSVDSYMTCAVRECYASFKNLINFLVVGERE 912

[Close]

BLAST of CsaV3_1G025450 vs. TAIR 10
Match: AT1G05570.1 (callose synthase 1 )

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-09
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 861 IPIALDMAKDSNGKDRELKKRLAVDSYMTCAVRECYASFKNLINYLVVGERE 912

[Close]

BLAST of CsaV3_1G025450 vs. TAIR 10
Match: AT1G05570.2 (callose synthase 1 )

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-09
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   IPIALDMAVEFRSRDSDLWKHIYADEYMKCEVIECCESLKNVLNVLAVGENE 53
           IPIALDMA +   +D +L K +  D YM C V EC  S KN++N L VGE E
Sbjct: 820 IPIALDMAKDSNGKDRELKKRLAVDSYMTCAVRECYASFKNLINYLVVGERE 871

The following BLAST results are available for this feature:

BLAST of CsaV3_1G025450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736499.1	5.3e-22	100.00	callose synthase 5-like isoform X2 [Cucumis sativus]	[more]
XP_031739309.1	5.3e-22	100.00	uncharacterized protein LOC116402939 isoform X1 [Cucumis sativus]	[more]
XP_031743825.1	5.3e-22	100.00	callose synthase 5-like isoform X2 [Cucumis sativus]	[more]
XP_031736507.1	5.3e-22	100.00	callose synthase 5-like isoform X5 [Cucumis sativus]	[more]
XP_031739314.1	5.3e-22	100.00	callose synthase 1-like isoform X4 [Cucumis sativus]	[more]

BLAST of CsaV3_1G025450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3B724	4.1e-17	75.47	Callose synthase 5 OS=Arabidopsis thaliana OX=3702 GN=CALS5 PE=1 SV=1	[more]
Q9SL03	3.4e-08	51.92	Callose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=CALS2 PE=2 SV=3	[more]
Q9AUE0	4.5e-08	51.92	Callose synthase 1 OS=Arabidopsis thaliana OX=3702 GN=CALS1 PE=1 SV=2	[more]
Q9LXT9	1.7e-07	49.06	Callose synthase 3 OS=Arabidopsis thaliana OX=3702 GN=CALS3 PE=3 SV=3	[more]
Q9LUD7	3.6e-05	48.00	Putative callose synthase 8 OS=Arabidopsis thaliana OX=3702 GN=CALS8 PE=3 SV=2	[more]

BLAST of CsaV3_1G025450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2I2	5.5e-17	86.79	1,3-beta-glucan synthase OS=Cucurbita maxima OX=3661 GN=LOC111499808 PE=3 SV=1	[more]
A0A5D3BRP0	5.5e-17	86.79	1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TH37	5.5e-17	86.79	1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TBD2	5.5e-17	86.79	1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BQP7	5.5e-17	86.79	1,3-beta-glucan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of CsaV3_1G025450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G13680.1	2.9e-18	75.47	callose synthase 5	[more]
AT2G31960.1	2.4e-09	51.92	glucan synthase-like 3	[more]
AT2G31960.2	2.4e-09	51.92	glucan synthase-like 3	[more]
AT1G05570.1	3.2e-09	51.92	callose synthase 1	[more]
AT1G05570.2	3.2e-09	51.92	callose synthase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 1..53
None	No IPR available	PANTHER	PTHR12741:SF53	GLUCAN SYNTHASE-LIKE PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G025450.1	CsaV3_1G025450.1	mRNA