CsaV3_1G017340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G017340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA topoisomerase 2-binding protein 1 isoform X2
Location	chr1: 11906973 .. 11907540 (-)
RNA-Seq Expression	CsaV3_1G017340
Synteny	CsaV3_1G017340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGTAATTATCCTTTTACTTAAATCGCAGCATAAGTTTTGTGAACTTTATTGCTTGAATTTGTGAGCTCGCTTGTGCTGTGAGCTTTTTGATTTCATTTGAATGATATATCCACCTAATTGGAAATTAGTTTTATCATATTTGAAATGGCAGGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

mRNA sequence

ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

Coding sequence (CDS)

ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTGGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGCCTTGCAAATGACTTTCAGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGGTTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCGGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAAATTATTCCTAAAG

Protein sequence

MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQKKEIPILGRHMAYDEIIPKX

Homology

[Close]

BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_031739410.1 (DNA topoisomerase 2-binding protein 1-like [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ
Sbjct: 233 MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 292

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ
Sbjct: 293 KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 352

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDEIIPK
Sbjct: 353 KKEIPILGRHMAYDEIIPK 371

[Close]

BLAST of CsaV3_1G017340 vs. NCBI nr
Match: KAE8652880.1 (hypothetical protein Csa_013023, partial [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ
Sbjct: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ
Sbjct: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDEIIPK
Sbjct: 121 KKEIPILGRHMAYDEIIPK 139

[Close]

BLAST of CsaV3_1G017340 vs. NCBI nr
Match: XP_031740436.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 6.0e-70
Identity = 131/139 (94.24%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVD+EVPV MGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDIEVPVTMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYM+FNDKLTHIIVGD SEMEKKEVRDIATSGVVHVVRSNWLE+CDRQ
Sbjct: 395 KIVNMILRGGGSRYMVFNDKLTHIIVGDSSEMEKKEVRDIATSGVVHVVRSNWLEECDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]

BLAST of CsaV3_1G017340 vs. NCBI nr
Match: KAA0052213.1 (DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 6.7e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 334 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 393

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 394 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 453

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 454 KKEIPILGRHMAYDELIPK 472

[Close]

BLAST of CsaV3_1G017340 vs. NCBI nr
Match: TYK01780.1 (DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 6.7e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 356 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 415

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 416 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 475

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 476 KKEIPILGRHMAYDELIPK 494

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy Swiss-Prot
Match: Q6ZQF0 (DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-07
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 25  ENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHI 84
           EN  N   + FQ+ E+   L  CRI + GF   ++ K+  +I  GGG R+   N+ +TH+
Sbjct: 341 ENLENLDISMFQAPED--LLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHV 400

Query: 85  IVGDPSEMEKKEVRDI--ATSGVVHVVRSNWLEDC 118
           IVGD  +    +VR     +S   HVV + WL +C
Sbjct: 401 IVGDYDD----DVRQFWSKSSHRPHVVGAKWLLEC 429

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy Swiss-Prot
Match: Q92547 (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 25  ENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHI 84
           EN  N   + FQ+ E+   L  CRI + GF   ++ K+  +I  GGG R+   N+ +TH+
Sbjct: 342 ENLENLDVSAFQAPED--LLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHV 401

Query: 85  IVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDC 118
           IVGD  +  K+     A     HVV + WL +C
Sbjct: 402 IVGDYDDELKQFWNKSAHR--PHVVGAKWLLEC 430

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL
Match: A0A1S4DV57 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL
Match: A0A1S4DV59 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 335 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 394

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 395 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 454

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 455 KKEIPILGRHMAYDELIPK 473

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL
Match: A0A5D3BRP8 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00080 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 356 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 415

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 416 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 475

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 476 KKEIPILGRHMAYDELIPK 494

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL
Match: A0A5A7U8G5 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00240 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 334 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 393

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 394 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 453

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 454 KKEIPILGRHMAYDELIPK 472

[Close]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL
Match: A0A1S3BAL1 (DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQ 60
           MFSDASHFINEVDVEVPVA GRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEM+
Sbjct: 283 MFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMR 342

Query: 61  KVVNMILRGGGSRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQ 120
           K+VNMILRGGGSRYMLFNDKLTHIIVG+ SEMEKKEVRDIA SGVVHVVR+NWLEDCDRQ
Sbjct: 343 KIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQ 402

Query: 121 KKEIPILGRHMAYDEIIPK 140
           KKEIPILGRHMAYDE+IPK
Sbjct: 403 KKEIPILGRHMAYDELIPK 421

[Close]

BLAST of CsaV3_1G017340 vs. TAIR 10
Match: AT1G77320.1 (transcription coactivators )

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 24  EENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTH 83
           E+N   C A D +SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGGSRYML N+++TH
Sbjct: 346 EQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTH 405

Query: 84  IIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQKKEIPILGRHMAYDEIIPK 140
           I+VG PSE EK+E R +A SGV+ VV  +WLEDCDR+KKEIP+   + A   I+P+
Sbjct: 406 IVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPR 461

[Close]

BLAST of CsaV3_1G017340 vs. TAIR 10
Match: AT1G77320.2 (transcription coactivators )

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 24  EENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTH 83
           E+N   C A D +SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGGSRYML N+++TH
Sbjct: 329 EQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTH 388

Query: 84  IIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDCDRQKKEIPILGRHMAYDEIIPK 140
           I+VG PSE EK+E R +A SGV+ VV  +WLEDCDR+KKEIP+   + A   I+P+
Sbjct: 389 IVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPR 444

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739410.1	4.5e-73	100.00	DNA topoisomerase 2-binding protein 1-like [Cucumis sativus]	[more]
KAE8652880.1	4.5e-73	100.00	hypothetical protein Csa_013023, partial [Cucumis sativus]	[more]
XP_031740436.1	6.0e-70	94.24	LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus]	[more]
KAA0052213.1	6.7e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]
TYK01780.1	6.7e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G017340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ZQF0	5.8e-07	35.79	DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV...	[more]
Q92547	7.5e-07	35.48	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=...	[more]

BLAST of CsaV3_1G017340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DV57	3.2e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DV59	3.2e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3BRP8	3.2e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7U8G5	3.2e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BAL1	3.2e-69	94.24	DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CsaV3_1G017340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77320.1	3.6e-36	57.76	transcription coactivators	[more]
AT1G77320.2	3.6e-36	57.76	transcription coactivators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 41..121 e-value: 0.0057 score: 25.9
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 39..131 score: 12.17116
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 22..127 e-value: 1.2E-15 score: 59.5
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 42..125
None	No IPR available	PANTHER	PTHR13561	DNA REPLICATION REGULATOR DPB11-RELATED	coord: 32..136
None	No IPR available	CDD	cd17718	BRCT_TopBP1_rpt3	coord: 38..122 e-value: 1.87484E-30 score: 103.06

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017340.1	CsaV3_1G017340.1	mRNA