CsaV3_1G017300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G017300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	agamous-like MADS-box protein AGL80
Location	chr1: 11853581 .. 11854313 (+)
RNA-Seq Expression	CsaV3_1G017300
Synteny	CsaV3_1G017300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGTTGCATGCGATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGGTACTTTTTGGTCAAATAATAATGTCATTTTCCCTTGAAAGGTTTGGGATGGTTTGTCATTAATTTCTCAAACTAGATTCCTCAATTAATGTTTAG

mRNA sequence

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Coding sequence (CDS)

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Protein sequence

MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV*

Homology

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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: KAE8652877.1 (hypothetical protein Csa_013025 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 1.0e-113
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV 214
           ANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV 213

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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_004139619.1 (agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_008458956.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo] >KAA0054322.1 agamous-like MADS-box protein AGL80 [Cucumis melo var. makuwa] >TYK12358.1 agamous-like MADS-box protein AGL80 [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_038895832.1 (agamous-like MADS-box protein AGL80 [Benincasa hispida])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 178/207 (85.99%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITND +RKATF KRKKGLLKKL ELTTLCGIEACAIIFNP NSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDTARKATFNKRKKGLLKKLNELTTLCGIEACAIIFNPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            LGLQ+VLSKFKSLPEMEQCKKMVNQET+L DRIAKA DQLKKLQRENREKEI R+MFQS
Sbjct: 61  ALGLQRVLSKFKSLPEMEQCKKMVNQETYLCDRIAKATDQLKKLQRENREKEIARLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           L AG TPP DLNVIDLNDLGWLVDQK+AD+GKRMELL VN+S R AT EPSWFMEM+++G
Sbjct: 121 LAAGGTPPPDLNVIDLNDLGWLVDQKVADVGKRMELLRVNQSMRAATREPSWFMEMMSRG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            +DED M FNIGDDVIQLPSFGEDDNH
Sbjct: 181 VDDEDQMKFNIGDDVIQLPSFGEDDNH 207

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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_038895833.1 (agamous-like MADS-box protein AGL80 [Benincasa hispida])

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 167/201 (83.08%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITND +RKAT K+RKK LLKKL ELT LCGIEACAIIFNP NSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDTARKATLKERKKSLLKKLNELTALCGIEACAIIFNPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            LGLQ+VLSKFKSLPEMEQCKKMVNQET++ DRI+KA DQLKKLQRENREK I R+MFQS
Sbjct: 61  ILGLQRVLSKFKSLPEMEQCKKMVNQETYICDRISKAVDQLKKLQRENREKVIARLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPP DL +IDLNDLGWLVDQK+ D+GKRMELL VN+S RVAT EPSWFMEMV++G
Sbjct: 121 LVAGATPPPDLTIIDLNDLGWLVDQKVVDVGKRMELLKVNQSMRVATMEPSWFMEMVSRG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSF 202
           A DED MGFNIGDDVIQ+P F
Sbjct: 181 AVDEDQMGFNIGDDVIQIPRF 201

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BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot
Match: Q9FJK3 (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.6e-48
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot
Match: Q7XJK8 (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.5e-34
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot
Match: O80805 (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-31
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot
Match: Q7XJK6 (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-30
Identity = 72/167 (43.11%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV S+F  +P   + KKM++QET+L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot
Match: Q7XJK5 (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV SKF  +P   + +KM++QET L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL
Match: A0A0A0LVU5 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.9e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL
Match: A0A5A7UEU7 (Agamous-like MADS-box protein AGL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001350 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL
Match: A0A1S3C968 (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL
Match: A0A6J1EUR5 (agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC111438097 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 6.2e-80
Identity = 162/210 (77.14%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL +ITNDA+RKATFKKRKKG LKKL ELTTLCGI+ACAIIF+P NS PDLWPS
Sbjct: 1   MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+V+S FK+LPEMEQCKKMVNQETFLR RIAKAADQLKKLQRENREKEI  VMFQS
Sbjct: 61  LVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL------TVNRSSRVATNEPSWFM 180
           LVAG  P   LNVIDLNDLGWLVDQKMADI KR+ELL        N+   VAT EPSWF+
Sbjct: 121 LVAGGAPRPSLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEENQPPCVATVEPSWFI 180

Query: 181 EMVNQGANDEDHMGFNIGDDVIQLPSFGED 205
           EMVNQ  +D+  M FNIGDDVIQLP+FGED
Sbjct: 181 EMVNQECDDQ--MRFNIGDDVIQLPTFGED 208

[Close]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL
Match: A0A6J1EG77 (agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC111434044 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 158/209 (75.60%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATN--EPSWFMEMVN 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+ELLT   +     +  EPSWFMEM++
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180

Query: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 205

[Close]

BLAST of CsaV3_1G017300 vs. TAIR 10
Match: AT5G48670.1 (AGAMOUS-like 80 )

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-49
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]

BLAST of CsaV3_1G017300 vs. TAIR 10
Match: AT5G26630.1 (MADS-box transcription factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-36
Identity = 76/171 (44.44%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTR+KVK+ +I N+ +RK+TFKKRKKGLLKK  EL  LCG+   A++ +P    P++WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
                +V+S++K++  M++ KKMVNQETFL+ RI KA +  KKL++EN+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPS 172
           L +G T    +   +L D G++++Q++ D+ +R+E+L  N       NEPS
Sbjct: 121 L-SGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRN-------NEPS 163

[Close]

BLAST of CsaV3_1G017300 vs. TAIR 10
Match: AT1G65300.1 (AGAMOUS-like 38 )

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-35
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of CsaV3_1G017300 vs. TAIR 10
Match: AT1G65330.1 (MADS-box transcription factor family protein )

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]

BLAST of CsaV3_1G017300 vs. TAIR 10
Match: AT3G05860.1 (MADS-box transcription factor family protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-31
Identity = 69/150 (46.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKK+ L+YITN++ RKATF KRKKGL+KK+ EL+ LCGIEACA+I++P NS P++WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
              ++ V+  F+ L ++EQ KKMV+ E F+R  I+K  +   K   +N E+ +   MFQ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADI 151
           L++G    L+L   +  DL   +DQ + ++
Sbjct: 121 LLSGKGEKLNLTDRNREDLCKYIDQYLKEL 149

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652877.1	1.0e-113	100.00	hypothetical protein Csa_013025 [Cucumis sativus]	[more]
XP_004139619.1	1.8e-110	100.00	agamous-like MADS-box protein AGL80 [Cucumis sativus]	[more]
XP_008458956.1	4.0e-105	96.63	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo] >KAA0054322.1 agam...	[more]
XP_038895832.1	1.4e-94	85.99	agamous-like MADS-box protein AGL80 [Benincasa hispida]	[more]
XP_038895833.1	1.3e-87	83.08	agamous-like MADS-box protein AGL80 [Benincasa hispida]	[more]

BLAST of CsaV3_1G017300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJK3	4.6e-48	56.14	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
Q7XJK8	6.5e-34	47.20	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P...	[more]
O80805	3.0e-31	45.24	MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 P...	[more]
Q7XJK6	7.4e-30	43.11	Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=...	[more]
Q7XJK5	2.8e-29	43.11	Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=...	[more]

BLAST of CsaV3_1G017300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVU5	8.9e-111	100.00	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE...	[more]
A0A5A7UEU7	1.9e-105	96.63	Agamous-like MADS-box protein AGL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C968	1.9e-105	96.63	agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4...	[more]
A0A6J1EUR5	6.2e-80	77.14	agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC11143809...	[more]
A0A6J1EG77	1.5e-78	75.60	agamous-like MADS-box protein AGL80 OS=Cucurbita moschata OX=3662 GN=LOC11143404...	[more]

BLAST of CsaV3_1G017300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48670.1	3.3e-49	56.14	AGAMOUS-like 80	[more]
AT5G26630.1	9.3e-36	44.44	MADS-box transcription factor family protein	[more]
AT1G65300.1	4.6e-35	47.20	AGAMOUS-like 38	[more]
AT1G65330.1	2.1e-32	45.24	MADS-box transcription factor family protein	[more]
AT3G05860.1	2.4e-31	46.00	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..114
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..171
None	No IPR available	PANTHER	PTHR11945:SF590	MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 2..171
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 60.12 coord: 3..23 score: 40.11 coord: 38..59 score: 24.94
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 7.7E-24 score: 95.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 e-value: 2.1E-17 score: 62.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..52 score: 17.605024
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..97 e-value: 2.8E-18 score: 67.7
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..95
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 2..85 e-value: 2.12212E-21 score: 82.3079

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017300.1	CsaV3_1G017300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity