CsaV3_1G017180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017180
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 11729897 .. 11732488 (-)
RNA-Seq ExpressionCsaV3_1G017180
SyntenyCsaV3_1G017180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTATTGATTTCTTTGTTTACCTTTCAAGAAATTAAATTTCCATGTGTTGATTTTGCTTTCTCCTCTTACTTCCTTGGATTAGGAGATATTCTCAACCCAACTTATATTTTTCACCCTATTTTCTCAGTTTCTCCTTGTGATAGCCATACCCAAACTCTCTCACCTAAGAGTGTAAGAATAATCCGATAATCCAAACTACCAAAGTCATATTATCTAGGTAAAGTTGAATTTAGTATAAAATGTGGGTTGGATGAGTTGAAAATTTTGATATTTTTTGGGTTGGATTGGGTCTCGGGTCGGAAGGTTAAAAAATTGTGGTCAACCCAACTCAATTCGAATTAATATGGATATAATGTATATATATATATATATATATTATTTATTTAATAAAAGTTAAATAATTTAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTACACTAAAATTATTTACTCTGGCAAAATTAAACTTCAATGTTTGATGTATGTCTAAAGCTTAATAATCTAAATTAGACATGATATTTGAAGCTCTCAATTGAAACTTCTTATTATGCCTTGTGGTTATGGTTTCTCGATGAACCTGGGATTGTGGTGTAAAAAAATGGGGATTTAACAAGTATATAACCACACTAAGAGATGATTTATCCCAAGCACTTGATCGTGGTGCTCAGTTTGGGATCTTTATTGTTCATGCCAATCTGTTTTTAGTAGATGAGCTAAATATGCAAGTAATCTAGCTAGCCGGTGAGTCAGGTCTTCGATTATCGTTTTCTCTTTGAAAGTCTTAGTTTTTTTTTTCTTGTCAGGGATAGTTTTTGCATTCTAACTATGGAAAAGAAGGATTGTCGTTTTTCTACTCTTGCTACACAAACATGTAACTGTGGAGCATTATTGGAGCCCTTTACTTTTTTCACCTTACCTGCGTTCAACTTTTAGTATTCTGAAATTATATTTGTTCCCCATCAATTACTACAGGAGAATGGAATTGTTCAGTCGGGACAAATTTCATGCCCCTTTATCTCCGTCCTCAGTTTTTTCCTCGTCTCGAAACTGTCAAGAATTATAAGTTCAAGTTACAAGCTTTTGGATATGGCTTCTCTTGAAGCTATTTTAACTTGTAATAGAAATTTAGCTCTTTCAATCTCTTACTTTAGTGGCTGAATGCTTAAAAAGGTTGTATTATTTTGTATCTGGATATATATCTTAGAATCAGATGATTTGAAGATTAAGAACATATTTATTGTATTTACTACTAGGAGTTTGTTAATGCCTTGCAATGTTTGTCCTAAAGCAAAAAATAATGTTGTGTATAAGAGATCTTCCACGTTTCCTGTTCCTGTTTTGGTCATTGTATTAATTATTGTAAATACCAGTACTACAATCCGCTGAAACAAGCATAGGGAATTAAGTTTGTTATCTATGTGATTTGATTTTGCCTTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCTTATGTGATTTTGTTTATGGCAAAAGGAGCTACTTATACTTGTGACTTCTAAGTAAGAATAAATAAACATAGATGGTTTGTTGTTACTTTTTAAACTTTACAAACATTAGAATTTAGAAACGAAAAAATATATATATATAACCCAACAACCCAACCCAACCCATTTACACCCGTACTCTCACCTATTGTATTTCATTTCTTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCATTGCTGCATAAAGCTCCATCCCAAGGTCTGTCCTATTTTTCTTATCATTCTTACGTTTTTATTGTTATTACTATTCTTTCTCCATTATTCTTCCCCATTTTTCTTCCTTAACTTCCTCTCATTAATCTCATCTTTTTTCTCTTCTCTCTCTTTTCCATCTATAATTCAACAATCACCCCTAATTTTATTTTCAAATCTTGCCAGATTTAGTTTCATGTCTTCTGGGGTTCATACGTTTGCCAATCCTTTAGCATCCACAATTCTTTTTCTTTTTTCTAGCTTAGATATCCATCTTATTATGTAGAGTGATTTTAGTGGGGGCAAAGCTTTTACTTACTTGAAAGATTGAACTTTTTTCAAACCTGACAAGGTAGTACCAGACTCCTCCTACCTATAGTTAGATTAGTTTCATATGTATTGTTGATCTGGTTTCTTATAAACAACTGCTTTCTCTTCTGTTTATCAAACTTTCTAACACATTCTTCCTCTACTTGAACAATTGTTTTATAATCTTCTTTATCATTTTTATAATCCTAATCTAGTTTTATTTTCAACTACAGAAGAGAATCTCTGCACAATCTTTGCTCTTTATATTTACATTTTGTTATGTTGTGTTTGTTTAGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

mRNA sequence

ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

Coding sequence (CDS)

ATGTTTGTTGTATTTAGTTCATCAGTTTTTCAATTTCATGCACAGGTTAGCCGTGCGTATTCCTCTTCTCAGTTTCTCTTCCTCGCGCGCCGTCCGTCTCCCTCTTCTCAGGCGCCGTCCATTTCCCTCTTCTTAGCAGCCGTCCGTCTCCCTCCCGGCTTTCTCCCACCGATACTCCTTCCGAAGGCCATTCTAACAGCTTGGTTAGCTGACATTTTGCACACCCATAAAATCTATTGGCTTGTGAGTCTGTGA

Protein sequence

MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILLPKAILTAWLADILHTHKIYWLVSL*
Homology
[Close]
BLAST of CsaV3_1G017180 vs. NCBI nr
Match: KGN65054.1 (hypothetical protein Csa_013037 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 7.7e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60
          MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL
Sbjct: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60

Query: 61 PKAILTAWLADILHTHKIYWLVSL 85
          PKAILTAWLADILHTHKIYWLVSL
Sbjct: 61 PKAILTAWLADILHTHKIYWLVSL 84

[Close]
BLAST of CsaV3_1G017180 vs. ExPASy TrEMBL
Match: A0A0A0LVT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G185105 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60
          MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL
Sbjct: 1  MFVVFSSSVFQFHAQVSRAYSSSQFLFLARRPSPSSQAPSISLFLAAVRLPPGFLPPILL 60

Query: 61 PKAILTAWLADILHTHKIYWLVSL 85
          PKAILTAWLADILHTHKIYWLVSL
Sbjct: 61 PKAILTAWLADILHTHKIYWLVSL 84

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65054.17.7e-36100.00hypothetical protein Csa_013037 [Cucumis sativus][more]
BLAST of CsaV3_1G017180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVT63.7e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G185105 PE=4 SV=1[more]
BLAST of CsaV3_1G017180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017180.1CsaV3_1G017180.1mRNA