CsaV3_1G016960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G016960
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProlamin_like domain-containing protein
Locationchr1: 11492229 .. 11492600 (+)
RNA-Seq ExpressionCsaV3_1G016960
SyntenyCsaV3_1G016960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTACTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGCCATGAAGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

mRNA sequence

AGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Coding sequence (CDS)

AGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Protein sequence

RVMRSKVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEEN*
Homology
BLAST of CsaV3_1G016960 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 2.9e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  RVMRSKVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 60
          RVMRSKVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED
Sbjct: 1  RVMRSKVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 60

Query: 61 TKVEEN 67
          TKVEEN
Sbjct: 61 TKVEEN 66

BLAST of CsaV3_1G016960 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV+E
Sbjct: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDE 122

Query: 66  N 67
           N
Sbjct: 123 N 123

BLAST of CsaV3_1G016960 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 61
           +VS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLET++
Sbjct: 69  EVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLETDE 123

BLAST of CsaV3_1G016960 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVL 57
           +VSY+CC+VILHG+PEKCAAVVFSSGGE S ++SGAV EYCDGMGITPPVL
Sbjct: 68  EVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of CsaV3_1G016960 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE
Sbjct: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 122

Query: 66  N 67
           N
Sbjct: 123 N 123

BLAST of CsaV3_1G016960 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV+E
Sbjct: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDE 122

Query: 66  N 67
           N
Sbjct: 123 N 123

BLAST of CsaV3_1G016960 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 61
           +VS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLET++
Sbjct: 69  EVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLETDE 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652857.12.9e-30100.00hypothetical protein Csa_023774, partial [Cucumis sativus][more]
KAA0038539.13.3e-2695.08hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
XP_022931003.15.7e-1878.18uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAG6571831.18.3e-1782.35hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LEG02.5e-2798.36Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... [more]
A0A5A7TB281.6e-2695.08Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A6J1EX442.8e-1878.18uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G016960.1CsaV3_1G016960.1mRNA