CsaV3_1G015590 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G015590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	U-box domain-containing protein 35-like
Location	chr1: 11109447 .. 11110200 (+)
RNA-Seq Expression	CsaV3_1G015590
Synteny	CsaV3_1G015590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACTTTGGAAGGAGATGTTTACTTCGGCACTGATGATTTCTTATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACTGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCAAACCATTGCGTTTACGTTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTATCCTCCACTATCGTTTATCTCTTTCGTGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATGTATGTCCTCTCTCTCTCTCTGCAACATAATTCTTTCAGAGTTGAAATAGCTTGATGCAAATAAAAAACAAAAGGTGTTTTTTATGCAATGTAAATAATCTGCAGAAAGATGTTCTATTTTGTTATCAACTGCAGAGAAGAACCAGTTTCAGCTAACTAAAATTTTTGCTTTCATGTTTTGTTATCAAGTGGGAATGCTTCCGAGGAGCCAGGTTAGTCCTAAGTGGAGAAGTTCAGGACTGAAGAGAGCAAAAAAGAGGGAGTTTCTTCAAAAGTTTGTTAATAAATGTTTGGCTGTTCAGGTATATATCATCAGCAGATTACATTCTATGCATTTCAGTTAGATTTTATGACCAAGTTCTTTACAATACAATTTCACTAACATTTTACAGGTCAGTGGGGAGGTTGTGATGATTGAAA

mRNA sequence

ATGTTGACTTTGGAAGGAGATGTTTACTTCGGCACTGATGATTTCTTATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACTGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCAAACCATTGCGTTTACGTTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTATCCTCCACTATCGTTTATCTCTTTCGTGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATTGGGAATGCTTCCGAGGAGCCAGGTCAGTGGGGAGGTTGTGATGATTGAAA

Coding sequence (CDS)

ATGTTGACTTTGGAAGGAGATGTTTACTTCGGCACTGATGATTTCTTATTAGATCCAAGTTTAAGCGCGAATGAAGATGAGGAATCGAGCGAGCTGTTCGAGATTGAGCTAGGGATTGAGGTGCGATCCAATTGTAAACTGGAGGATGATTGCGGGGAAAGTTGGTTCTCCTTTGATTTCCGCAAATCAAACCATTGCGTTTACGTTGGGATTAGCGATAACTTCGATTCGAGTTTGGACGCCTTGCAATGGACTCTCCATTTCGCTGTTTTATCCTCCACTATCGTTTATCTCTTTCGTGTCTTCCCCGAGATTCGCTTCATTCCCAGCCCATTGGGAATGCTTCCGAGGAGCCAGGTCAGTGGGGAGGTTGTGATGATTGAAA

Protein sequence

MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDFRKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQVSGEVVMIEX

Homology

[Close]

BLAST of CsaV3_1G015590 vs. NCBI nr
Match: KAE8652834.1 (hypothetical protein Csa_022704, partial [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 8.3e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF
Sbjct: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120

Query: 121 SGEVVMIE 129
           SGEVVMIE
Sbjct: 121 SGEVVMIE 128

[Close]

BLAST of CsaV3_1G015590 vs. NCBI nr
Match: XP_011654798.1 (uncharacterized protein LOC101215271 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF
Sbjct: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of CsaV3_1G015590 vs. NCBI nr
Match: XP_008464309.1 (PREDICTED: U-box domain-containing protein 35-like [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 5.6e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           ML  EG VYFGTDDFLLDPSLSANEDEESSELFEIELGIE RSN K ED+C ESWFSFDF
Sbjct: 1   MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNH VYVGISDNFDSS+DALQWTLHFAVL STIVYLF VFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYLFHVFPEIRFIPSPLGMLPRSQV 120

Query: 121 SGEVV 126
           S ++V
Sbjct: 121 SPKLV 125

[Close]

BLAST of CsaV3_1G015590 vs. NCBI nr
Match: KAA0042368.1 (U-box domain-containing protein 35-like [Cucumis melo var. makuwa] >TYK15487.1 U-box domain-containing protein 35-like [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 5.6e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           ML  EG VYFGTDDFLLDPSLSANEDEESSELFEIELGIE RSN K ED+C ESWFSFDF
Sbjct: 1   MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNH VYVGISDNFDSS+DALQWTLHFAVL STIVYLF VFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYLFHVFPEIRFIPSPLGMLPRSQV 120

Query: 121 SGEVV 126
           S ++V
Sbjct: 121 SPKLV 125

[Close]

BLAST of CsaV3_1G015590 vs. NCBI nr
Match: XP_038894104.1 (U-box domain-containing protein 35-like [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 7.8e-48
Identity = 103/125 (82.40%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           ML LEG      DDFLLD SL ANEDEESSELFEIELGIEVRSN K EDDC ESWFSFDF
Sbjct: 1   MLPLEGG-----DDFLLDRSLIANEDEESSELFEIELGIEVRSNRKQEDDCEESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNHCVYVGISDNFDSS+DALQWTL FAVL STIVYLF VFPE+RF+PSPLGMLP+SQV
Sbjct: 61  RKSNHCVYVGISDNFDSSMDALQWTLDFAVLPSTIVYLFHVFPELRFVPSPLGMLPKSQV 120

Query: 121 SGEVV 126
           S ++V
Sbjct: 121 SPKLV 120

[Close]

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL
Match: A0A0A0LVQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G175720 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF
Sbjct: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL
Match: A0A5D3CU66 (U-box domain-containing protein 35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00730 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           ML  EG VYFGTDDFLLDPSLSANEDEESSELFEIELGIE RSN K ED+C ESWFSFDF
Sbjct: 1   MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNH VYVGISDNFDSS+DALQWTLHFAVL STIVYLF VFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYLFHVFPEIRFIPSPLGMLPRSQV 120

Query: 121 SGEVV 126
           S ++V
Sbjct: 121 SPKLV 125

[Close]

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL
Match: A0A1S3CLA7 (U-box domain-containing protein 35-like OS=Cucumis melo OX=3656 GN=LOC103502223 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MLTLEGDVYFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDF 60
           ML  EG VYFGTDDFLLDPSLSANEDEESSELFEIELGIE RSN K ED+C ESWFSFDF
Sbjct: 1   MLASEGGVYFGTDDFLLDPSLSANEDEESSELFEIELGIEARSNRKQEDECAESWFSFDF 60

Query: 61  RKSNHCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQV 120
           RKSNH VYVGISDNFDSS+DALQWTLHFAVL STIVYLF VFPEIRFIPSPLGMLPRSQV
Sbjct: 61  RKSNHFVYVGISDNFDSSMDALQWTLHFAVLPSTIVYLFHVFPEIRFIPSPLGMLPRSQV 120

Query: 121 SGEVV 126
           S ++V
Sbjct: 121 SPKLV 125

[Close]

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL
Match: A0A6J1CM72 (U-box domain-containing protein 35-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 9   YFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDC----GESWFSFDFRKSN 68
           YFG+++F  D SLS NE+  SSELFEIELGIEVRSN K EDDC      SWFSFDFRKSN
Sbjct: 18  YFGSENFQFDRSLSENEEGGSSELFEIELGIEVRSNRKQEDDCECEFEGSWFSFDFRKSN 77

Query: 69  HCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQVSGEV 126
           HCVYVGI DN DSS+DAL+WTL+FAVL ST+VYL  +FPEIRF+PSPLGMLP+SQVS  +
Sbjct: 78  HCVYVGIGDNIDSSMDALKWTLNFAVLPSTVVYLLHIFPEIRFVPSPLGMLPKSQVSPRL 137

[Close]

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL
Match: A0A6J1CMT0 (U-box domain-containing protein 35-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111012574 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 9   YFGTDDFLLDPSLSANEDEESSELFEIELGIEVRSNCKLEDDC----GESWFSFDFRKSN 68
           YFG+++F  D SLS NE+  SSELFEIELGIEVRSN K EDDC      SWFSFDFRKSN
Sbjct: 18  YFGSENFQFDRSLSENEEGGSSELFEIELGIEVRSNRKQEDDCECEFEGSWFSFDFRKSN 77

Query: 69  HCVYVGISDNFDSSLDALQWTLHFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQVSGEV 126
           HCVYVGI DN DSS+DAL+WTL+FAVL ST+VYL  +FPEIRF+PSPLGMLP+SQVS  +
Sbjct: 78  HCVYVGIGDNIDSSMDALKWTLNFAVLPSTVVYLLHIFPEIRFVPSPLGMLPKSQVSPRL 137

[Close]

BLAST of CsaV3_1G015590 vs. TAIR 10
Match: AT5G47740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 23  ANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDFRKSNHCVYVGISDNFDSSLDAL 82
           +NE EE  E  +    +E     +LE   G S  +      ++ VYVG+    DSS++AL
Sbjct: 5   SNEIEEEEEQEDGRRRLESVRESQLE---GRSSGTVSMNGEDN-VYVGVGKG-DSSMEAL 64

Query: 83  QWTL-HFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQVSGEVV 126
           +W + +    SST+++L  VFPE RFIP PLG + R + S E V
Sbjct: 65  RWAIDNLMTSSSTLLFLIHVFPETRFIPYPLGRITRERASQEQV 103

[Close]

BLAST of CsaV3_1G015590 vs. TAIR 10
Match: AT5G47740.2 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 23  ANEDEESSELFEIELGIEVRSNCKLEDDCGESWFSFDFRKSNHCVYVGISDNFDSSLDAL 82
           +NE EE  E  +    +E     +LE   G S  +      ++ VYVG+    DSS++AL
Sbjct: 5   SNEIEEEEEQEDGRRRLESVRESQLE---GRSSGTVSMNGEDN-VYVGVGKG-DSSMEAL 64

Query: 83  QWTL-HFAVLSSTIVYLFRVFPEIRFIPSPLGMLPRSQVSGEVV 126
           +W + +    SST+++L  VFPE RFIP PLG + R + S E V
Sbjct: 65  RWAIDNLMTSSSTLLFLIHVFPETRFIPYPLGRITRERASQEQV 103

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652834.1	8.3e-66	100.00	hypothetical protein Csa_022704, partial [Cucumis sativus]	[more]
XP_011654798.1	5.6e-62	100.00	uncharacterized protein LOC101215271 [Cucumis sativus]	[more]
XP_008464309.1	5.6e-54	88.00	PREDICTED: U-box domain-containing protein 35-like [Cucumis melo]	[more]
KAA0042368.1	5.6e-54	88.00	U-box domain-containing protein 35-like [Cucumis melo var. makuwa] >TYK15487.1 U...	[more]
XP_038894104.1	7.8e-48	82.40	U-box domain-containing protein 35-like [Benincasa hispida]	[more]

BLAST of CsaV3_1G015590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVQ5	2.7e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G175720 PE=4 SV=1	[more]
A0A5D3CU66	2.7e-54	88.00	U-box domain-containing protein 35-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CLA7	2.7e-54	88.00	U-box domain-containing protein 35-like OS=Cucumis melo OX=3656 GN=LOC103502223 ...	[more]
A0A6J1CM72	5.9e-41	72.73	U-box domain-containing protein 35-like isoform X3 OS=Momordica charantia OX=367...	[more]
A0A6J1CMT0	5.9e-41	72.73	U-box domain-containing protein 35-like isoform X4 OS=Momordica charantia OX=367...	[more]

BLAST of CsaV3_1G015590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47740.1	3.8e-08	37.50	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT5G47740.2	3.8e-08	37.50	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47382	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	coord: 25..125
None	No IPR available	PANTHER	PTHR47382:SF3	ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN	coord: 25..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015590.1	CsaV3_1G015590.1	mRNA