CsaV3_1G015580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015580
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 11101817 .. 11102146 (+)
RNA-Seq ExpressionCsaV3_1G015580
SyntenyCsaV3_1G015580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

mRNA sequence

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Coding sequence (CDS)

ATGGAAATCACTTCCTCACCTGATGCAGATTTTTCAGGATTAGCAACAAGAACCCTCATAAGATCAACAAAAGAAATTCTGGTCTTTGAAAGAAGAAGAAAAGAGCCAAAGTCGGAGACAAAAGTAGGGAAGGACGTGGCCGAGGAGTTTGAGAAAGAAAAGACTAGAAACACTTTGTCAGAGGAGAAAGTGCCCAACTGCAAGAAGGAAGAGGGACAAGTATATTCAAGGACACTATTGCAGGCACAGGTAGAGGAAGGGCAAAAAGAACAAGTGGGACCTCATCACCATCCAAGAAGAGGATTAAGGTGCAAAAACCAAAGTAATTAA

Protein sequence

MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN*
Homology
BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_022689 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 6.4e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_011472 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_011070 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_010598 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

BLAST of CsaV3_1G015580 vs. NCBI nr
Match: KGN44040.1 (hypothetical protein Csa_011856 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

BLAST of CsaV3_1G015580 vs. ExPASy TrEMBL
Match: A0A0A0LTC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.1e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
           MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS
Sbjct: 1   MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 110
           EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN
Sbjct: 61  EEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHPRRGLRCKNQSN 109

BLAST of CsaV3_1G015580 vs. ExPASy TrEMBL
Match: A0A0A0LAF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 150

BLAST of CsaV3_1G015580 vs. ExPASy TrEMBL
Match: A0A0A0L7Q4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99

Query: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 99
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 134

BLAST of CsaV3_1G015580 vs. ExPASy TrEMBL
Match: A0A0A0L6W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60

Query: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 87
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 72

BLAST of CsaV3_1G015580 vs. ExPASy TrEMBL
Match: A0A0A0K323 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 39 ETKVGKDVAEEFEKEKTRNTLSEEKVPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98
          ETKV ++  +EFEKE  +NT+ EEK+PN KKE GQVY++ LL+AQVE+ +K ++G  HHP
Sbjct: 4  ETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRHHP 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65003.16.4e-51100.00hypothetical protein Csa_022689 [Cucumis sativus][more]
KGN57939.12.0e-1256.84hypothetical protein Csa_011472 [Cucumis sativus][more]
KGN57975.13.5e-1252.63hypothetical protein Csa_011070 [Cucumis sativus][more]
KGN57730.12.1e-0956.98hypothetical protein Csa_010598 [Cucumis sativus][more]
KGN44040.16.7e-0856.67hypothetical protein Csa_011856 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTC43.1e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1[more]
A0A0A0LAF69.8e-1356.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1[more]
A0A0A0L7Q41.7e-1252.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1[more]
A0A0A0L6W81.0e-0956.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1[more]
A0A0A0K3233.3e-0856.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015580.1CsaV3_1G015580.1mRNA