CsaV3_1G015520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015520
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 11057316 .. 11057603 (+)
RNA-Seq ExpressionCsaV3_1G015520
SyntenyCsaV3_1G015520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

mRNA sequence

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ*
Homology
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.1e-33
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          QVGTE+HG +AGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV-VMNAFG 60
           MD+  KVLQ+KDQ+TVVAAVSVVLSLF          LAFFWPLFASTA LLV ++ AF 
Sbjct: 132 MDVQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFR 191

Query: 61  GGFQVGTEIHGMR-AGEGILDYVAGRPENGENHYKYQ 96
           GGFQVGT+IHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 192 GGFQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.2e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.7e-41
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.7e-19
Identity = 54/87 (62.07%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  LT+ A V +VLSL +YAAPR ++ILAFFWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPEN 88
            Q  TE HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87

BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: B9HD48 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G017900 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

BLAST of CsaV3_1G015520 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           M+I AK+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

BLAST of CsaV3_1G015520 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          M+   K+L+ K Q+     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEIHGMRAG-----EGILDYVAG 84
             +    T I G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64996.11.5e-43100.00hypothetical protein Csa_022896 [Cucumis sativus][more]
KAA0042343.12.0e-4093.68hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546... [more]
KAG7012637.11.4e-3386.02hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573520.13.1e-3384.95hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583721.11.5e-2472.16hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYI87.2e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1[more]
A0A5D3CU449.7e-4193.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9EZM92.7e-1962.07Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1[more]
A0A061GGG11.0e-1849.47Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1[more]
B9HD488.8e-1853.13Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G017900 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT4G16400.12.4e-1547.25unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G13175.17.7e-0637.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125OS01G0762900 PROTEINcoord: 1..91
NoneNo IPR availablePANTHERPTHR34125:SF7TRANSMEMBRANE PROTEINcoord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015520.1CsaV3_1G015520.1mRNA