CsaV3_1G015520 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ* Homology
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus]) HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa]) HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40 Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.8 bits (382), Expect = 3.1e-33 Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24 Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 7.2e-44 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 9.7e-41 Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.7e-19 Identity = 54/87 (62.07%), Postives = 69/87 (79.31%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18 Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. ExPASy TrEMBL
Match: B9HD48 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G017900 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18 Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15 Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CsaV3_1G015520 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06 Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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