CsaV3_1G015430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015430
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr1: 10968735 .. 10969378 (-)
RNA-Seq ExpressionCsaV3_1G015430
SyntenyCsaV3_1G015430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACCTACATTGTGGTGCTTGTGGTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAAAATTTGATTTTGAGATGTTTCTCGTTTAGTCTATGCATTGGACATAGACTAAGTAACAATTTGTAATAAAATTGGGTTTACAGCTCCAAAGGTGATGACTTATTGAATTTTTAAAAGAGAAATTGCATCATAAGGCAAAAACATTTTTTAAAAAATAGCCCATGTCATATCTTTTTTTGCATATTGCGAATATGACAAATATGACAAGTAATTAGTGATATCACACGGCTATCAGATGACTATAAGTATACTCACGTACTTTG

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Protein sequence

MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTCG*
Homology
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.4e-32
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASR 60
          MTKLYSSWILTI L IAVAMI +PQGALA  RCQD LY++GCTLADCGQKCWEKHH+AS 
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 QCIPTDPDQTIYACYCFYTCG 81
          QCIPTDP QTIYACYCFY CG
Sbjct: 61 QCIPTDPGQTIYACYCFYNCG 81

BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.4e-18
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 29 AARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTCG 81
          A RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT+P QTIYACYCF+ CG
Sbjct: 12 AQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDCG 63

BLAST of CsaV3_1G015430 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 22  SIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTC 80
           ++PQ     RC + LY SGCTL+DCG+KCWEKHH+   +CI  +  QT YACYC + C
Sbjct: 56  NVPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of CsaV3_1G015430 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 16 IAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYC 75
          +A+   ++PQ     RC++ LY+SGCTL DCG+KCW+KHH+A   C+  +  Q  YACYC
Sbjct: 30 VALNNQNVPQAYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYC 89

Query: 76 FYTC 80
           + C
Sbjct: 90 MFNC 92

BLAST of CsaV3_1G015430 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

BLAST of CsaV3_1G015430 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASR 60
          MTKLYSSWILTI L IAVAMI +PQGALA  RCQD LY++GCTLADCGQKCWEKHH+AS 
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 QCIPTDPDQTIYACYCFYTCG 81
          QCIPTDP QTIYACYCFY CG
Sbjct: 61 QCIPTDPGQTIYACYCFYNCG 81

BLAST of CsaV3_1G015430 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

BLAST of CsaV3_1G015430 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

BLAST of CsaV3_1G015430 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 22  SIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTC 80
           ++PQ     RC + LY SGCTL+DCG+KCWEKHH+   +CI  +  QT YACYC + C
Sbjct: 56  NVPQAYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64987.11.1e-39100.00hypothetical protein Csa_022748 [Cucumis sativus][more]
KAA0042348.16.4e-3283.95S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KAE8649772.12.4e-1875.00hypothetical protein Csa_012405, partial [Cucumis sativus][more]
BBH07492.18.2e-1153.45hypothetical protein Prudu_019451 [Prunus dulcis][more]
CAB4286917.12.4e-1046.88unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVZ55.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A5A7THQ73.1e-3283.95S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0L2R31.2e-2064.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A0A0KYP71.3e-1451.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A4Y1RT054.0e-1153.45Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 31..79
e-value: 6.3E-7
score: 29.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015430.1CsaV3_1G015430.1mRNA