CsaV3_1G015420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015420
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase domain-containing protein
Locationchr1: 10960438 .. 10960599 (-)
RNA-Seq ExpressionCsaV3_1G015420
SyntenyCsaV3_1G015420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

mRNA sequence

GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

Coding sequence (CDS)

GCATACCAGATGGCTTACATGATCCCAAATGGCATAACACCTTTCAAGCTCATATTCGATAAGTCGTGCCAATTCCTAGTTGAGATAGGACATAAAGCTTATTGGGCGGTCATGCAATGCAACCCAACTCTCGCACAAGCCAACAGAGACAAGGTTTCTTGA

Protein sequence

AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKVS*
Homology
BLAST of CsaV3_1G015420 vs. NCBI nr
Match: KAE8652829.1 (hypothetical protein Csa_022892, partial [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKVS 54
          AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKVS
Sbjct: 1  AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKVS 53

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_038889236.1 (uncharacterized protein LOC120079127 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1  AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKV 53
          AY++AY  P    P+KLI+ K+C  LVEI HKAYWAV QCN +LAQA+ +++
Sbjct: 9  AYRIAYTTPIETMPYKLIYGKACHLLVEIEHKAYWAVKQCNMSLAQASEERL 60

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_016185592.1 (uncharacterized protein LOC107627254 [Arachis ipaensis] >XP_025635951.1 uncharacterized protein LOC112730053 [Arachis hypogaea])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY +P G++PF+L++DK+C   VEI HKAYWA+ +CNP+L  A  ++
Sbjct: 58  AYRTAYKMPIGMSPFRLVYDKACHLPVEIEHKAYWAIKECNPSLGGAGIER 108

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_025661708.1 (uncharacterized protein LOC112757331 [Arachis hypogaea])

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G++PF+L++DK+C   VEI HKAYWA+ +CNP+L  A  ++
Sbjct: 252 AYRTAYKTPIGMSPFRLVYDKACHLPVEIEHKAYWAIKECNPSLGGAGVER 302

BLAST of CsaV3_1G015420 vs. NCBI nr
Match: XP_038885818.1 (uncharacterized protein LOC120076112 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1  AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDKV 53
          AY+  +  P G TPFKL++ K+C  LVEI H+AYWA+ +CN  LAQA   ++
Sbjct: 9  AYRTTFKTPIGTTPFKLVYGKACHLLVEIEHRAYWAIKRCNMNLAQAGEQRL 60

BLAST of CsaV3_1G015420 vs. ExPASy TrEMBL
Match: A0A6P5MQJ7 (uncharacterized protein LOC110275689 OS=Arachis duranensis OX=130453 GN=LOC110275689 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQA 48
           AY+ AY +P G++PF+L++ K+C  LVE+ H+AYWAV +CNP+L  A
Sbjct: 58  AYRTAYKMPIGMSPFRLVYGKACHLLVEVEHRAYWAVKECNPSLGGA 104

BLAST of CsaV3_1G015420 vs. ExPASy TrEMBL
Match: A0A6P4PJS8 (uncharacterized protein LOC108484766 OS=Gossypium arboreum OX=29729 GN=LOC108484766 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G+ P++L+F K+C FLVE+ HKAYWA+ QCN  L  A +++
Sbjct: 58  AYRTAYKGPIGMAPYRLVFGKACHFLVELKHKAYWAIRQCNMELELAGKER 108

BLAST of CsaV3_1G015420 vs. ExPASy TrEMBL
Match: A0A6P4MZT5 (uncharacterized protein LOC108472328 OS=Gossypium arboreum OX=29729 GN=LOC108472328 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-08
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANR 50
           AY+MAY  P GITP++L+F K+C   VE+ HKAYWA+ QCN  L  A +
Sbjct: 252 AYRMAYKGPIGITPYRLVFGKACHLPVELEHKAYWAIRQCNMELEPAGK 300

BLAST of CsaV3_1G015420 vs. ExPASy TrEMBL
Match: A0A1U8J171 (uncharacterized protein LOC107902419 OS=Gossypium hirsutum OX=3635 GN=LOC107902419 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1   AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQANRDK 52
           AY+ AY  P G++P++LIFDK C  LVE+ HKA+WA+ QCN  +  A R +
Sbjct: 54  AYRTAYKGPIGMSPYRLIFDKPCHLLVELEHKAFWAIEQCNMEMESAGRSR 104

BLAST of CsaV3_1G015420 vs. ExPASy TrEMBL
Match: A0A445A149 (Reverse transcriptase OS=Arachis hypogaea OX=3818 GN=Ahy_B03g065235 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 1    AYQMAYMIPNGITPFKLIFDKSCQFLVEIGHKAYWAVMQCNPTLAQA 48
            AY+ AY  P G++PF++++ K+C  LVEI H+AYWAV QCN  LA+A
Sbjct: 1438 AYRTAYKTPIGMSPFRIVYGKACHLLVEIEHRAYWAVKQCNMDLAKA 1484

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652829.12.8e-23100.00hypothetical protein Csa_022892, partial [Cucumis sativus][more]
XP_038889236.18.7e-0955.77uncharacterized protein LOC120079127 [Benincasa hispida][more]
XP_016185592.11.1e-0850.98uncharacterized protein LOC107627254 [Arachis ipaensis] >XP_025635951.1 uncharac... [more]
XP_025661708.11.9e-0850.98uncharacterized protein LOC112757331 [Arachis hypogaea][more]
XP_038885818.14.3e-0850.00uncharacterized protein LOC120076112 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5MQJ72.1e-0853.19uncharacterized protein LOC110275689 OS=Arachis duranensis OX=130453 GN=LOC11027... [more]
A0A6P4PJS82.7e-0850.98uncharacterized protein LOC108484766 OS=Gossypium arboreum OX=29729 GN=LOC108484... [more]
A0A6P4MZT54.7e-0855.10uncharacterized protein LOC108472328 OS=Gossypium arboreum OX=29729 GN=LOC108472... [more]
A0A1U8J1716.1e-0850.98uncharacterized protein LOC107902419 OS=Gossypium hirsutum OX=3635 GN=LOC1079024... [more]
A0A445A1496.1e-0855.32Reverse transcriptase OS=Arachis hypogaea OX=3818 GN=Ahy_B03g065235 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015420.1CsaV3_1G015420.1mRNA