CsaV3_1G015240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G015240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr1: 10831303 .. 10831539 (-)
RNA-Seq Expression	CsaV3_1G015240
Synteny	CsaV3_1G015240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

mRNA sequence

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Coding sequence (CDS)

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Protein sequence

MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ*

Homology

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BLAST of CsaV3_1G015240 vs. NCBI nr
Match: KGN64972.1 (hypothetical protein Csa_022702 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

[Close]

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: KAA0059103.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: XP_004144516.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_020556 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. NCBI nr
Match: KAG7019344.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ 78
           L+GR+GQVEE EKLIMEME+EPD+ LWGA+LSACRIHGKA+VADRVQ RFMKQ
Sbjct: 255 LLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMKQ 307

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot
Match: Q9M9E2 (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-07
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-07
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot
Match: Q9SV26 (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H65 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-07
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL
Match: A0A0A0LVX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169960 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.3e-18
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL
Match: A0A1S3C0K0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.3e-18
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.5e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

[Close]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ 78
           L+GR+GQVEE EKLIMEME+EPD+ LWGA+LSACRIHGK +VADRVQ RFMKQ
Sbjct: 255 LLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMKQ 307

[Close]

BLAST of CsaV3_1G015240 vs. TAIR 10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-08
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

[Close]

BLAST of CsaV3_1G015240 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of CsaV3_1G015240 vs. TAIR 10
Match: AT4G01030.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

[Close]

BLAST of CsaV3_1G015240 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-08
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

[Close]

BLAST of CsaV3_1G015240 vs. TAIR 10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-08
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64972.1	2.5e-36	100.00	hypothetical protein Csa_022702 [Cucumis sativus]	[more]
KAA0059103.1	1.5e-17	85.19	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627...	[more]
XP_008455480.1	1.5e-17	85.19	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
XP_004144516.1	2.0e-17	85.19	pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sa...	[more]
KAG7019344.1	1.3e-16	83.02	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of CsaV3_1G015240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9E2	4.3e-07	50.00	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
Q9STF3	9.5e-07	38.78	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
Q9SV26	9.5e-07	35.14	Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidop...	[more]
O81767	1.2e-06	50.00	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
Q9FFG8	1.2e-06	50.00	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_1G015240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVX2	1.2e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169960 PE=4 SV=1	[more]
A0A5A7UT42	7.3e-18	85.19	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C0K0	7.3e-18	85.19	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A0A0K1F7	9.5e-18	85.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1	[more]
A0A6J1EHW3	1.8e-16	81.13	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]

BLAST of CsaV3_1G015240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15510.1	3.0e-08	50.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G46790.1	6.7e-08	38.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G01030.1	6.7e-08	35.14	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G33990.1	8.8e-08	50.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G44230.1	8.8e-08	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..78 e-value: 3.1E-7 score: 32.1
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 25..76
None	No IPR available	PANTHER	PTHR47929:SF14	SUBFAMILY NOT NAMED	coord: 25..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015240.1	CsaV3_1G015240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding