Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGGTCTCCCCGTCTAGTCTCCGGTAATCCACTGCTACCTCCAATCAATCCATCTCCAACTCTCTCCTACCGCTCTCATTAACTTTTTGGTCTTCATTCTCGTCTTCGCAGGGTTCATCAAGCCGCCCGTGGCTGCCAGGAATCCGCTCAGCGTAGCCGGTGCATCTGGTGGAAAGTTCACCTGGTAAGAAATTTAGTGATGATGTGATTCCGAGAATGAGTGGTTGTTTGGTGTAATTTTGATATTGGTTTTGTTTTGGTGGAGTGAAGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGGTTTGGACTCATCGGGTGGATTGCCCCATCAAGCATTCCGGTGATCAGTGGGAAGAGCTTGACGGGGCTGTTTTTTGAGAGCATTGGAGCAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTAAATTACATTCATTTACCTTTAACTTCATTCACTTTTTTTGTCTACTTTTTAAATTTTAATTATGAATTTATGGTTGTTTCTAAACACTTCTCATAATCCAATATCATTCTTCTTCTATAAGTTTTGGAAAACTTAACATAATTCACATCAAAATTATTATAAAGTTTATAAAATTTTGTGAGATTTATTGGGTAAAATTGTAAGAAACTTGTTAGTGGTTATTTTAATTTAAATGAATGATGTGTAATTAATCCAGGTTGTGGCTGATTACGTGGCATTTGGGTCTCTTTATTACGCTTACTTTTGGACAAATCGGATTCAAGGGAAGGACCGAAGACTACTTTTCAAAGTGA
mRNA sequence
ATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGGTCTCCCCGTCTAGTCTCCGGGTTCATCAAGCCGCCCGTGGCTGCCAGGAATCCGCTCAGCGTAGCCGGTGCATCTGGTGGAAAGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGGTTTGGACTCATCGGGTGGATTGCCCCATCAAGCATTCCGGTGATCAGTGGGAAGAGCTTGACGGGGCTGTTTTTTGAGAGCATTGGAGCAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTTGTGGCTGATTACGTGGCATTTGGGTCTCTTTATTACGCTTACTTTTGGACAAATCGGATTCAAGGGAAGGACCGAAGACTACTTTTCAAAGTGA
Coding sequence (CDS)
ATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGGTCTCCCCGTCTAGTCTCCGGGTTCATCAAGCCGCCCGTGGCTGCCAGGAATCCGCTCAGCGTAGCCGGTGCATCTGGTGGAAAGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGGTTTGGACTCATCGGGTGGATTGCCCCATCAAGCATTCCGGTGATCAGTGGGAAGAGCTTGACGGGGCTGTTTTTTGAGAGCATTGGAGCAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTTGTGGCTGATTACGTGGCATTTGGGTCTCTTTATTACGCTTACTTTTGGACAAATCGGATTCAAGGGAAGGACCGAAGACTACTTTTCAAAGTGA
Protein sequence
MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK*
Homology
BLAST of CsaV3_1G015100 vs. NCBI nr
Match:
XP_004139499.1 (photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_022779 [Cucumis sativus])
HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW
Sbjct: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
Query: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT
Sbjct: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
Query: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 147
WHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 146
BLAST of CsaV3_1G015100 vs. NCBI nr
Match:
XP_008463649.1 (PREDICTED: photosystem I subunit O [Cucumis melo])
HSP 1 Score: 280.4 bits (716), Expect = 8.8e-72
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0
Query: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V AS G+FTCFERDW
Sbjct: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
Query: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFWLWLIT
Sbjct: 61 LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLIT 120
Query: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 147
WHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 146
BLAST of CsaV3_1G015100 vs. NCBI nr
Match:
XP_038895620.1 (photosystem I subunit O [Benincasa hispida])
HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MATAFAT SSV GLGTASLSSPSSRSPRLVSGF+K PV ARNP +VA ASGG+FTCFERD
Sbjct: 1 MATAFATSSSVVGLGTASLSSPSSRSPRLVSGFVKLPVTARNPFAVARASGGRFTCFERD 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61 WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147
TWHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147
BLAST of CsaV3_1G015100 vs. NCBI nr
Match:
XP_022973174.1 (photosystem I subunit O [Cucurbita maxima])
HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 132/147 (89.80%), Postives = 138/147 (93.88%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MA+AFAT SSV GLG++SLSSPSSRSPRLVSGFIKPPV ARNP VA + GG+FTCF+RD
Sbjct: 1 MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61 WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147
TWHLGLFITLTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147
BLAST of CsaV3_1G015100 vs. NCBI nr
Match:
XP_022142590.1 (photosystem I subunit O [Momordica charantia])
HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 0
Query: 1 MATAFATSS-VAGLG-TASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFER 60
MATAFATSS + GLG ++SLSSPSSRSPRL S F+K P AARNPLSVA ASGG+FTCFER
Sbjct: 1 MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60
Query: 61 DWLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
DWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWL
Sbjct: 61 DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
Query: 121 ITWHLGLFITLTFGQIGFKGRTEDYFSK 147
+TWHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 VTWHLGLFITLTFGQIGFKGRTEDYFSK 148
BLAST of CsaV3_1G015100 vs. ExPASy Swiss-Prot
Match:
Q949Q5 (Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 1.1e-56
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MA FAT S+V GLG +S+++ S F+KP ++A+NPL +AGASGG+ TCFER+
Sbjct: 1 MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFWLWL+
Sbjct: 61 WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLV 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYF 145
TWHLGLF+ LTFGQIGFKGRTEDYF
Sbjct: 121 TWHLGLFLCLTFGQIGFKGRTEDYF 140
BLAST of CsaV3_1G015100 vs. ExPASy TrEMBL
Match:
A0A0A0LT61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1)
HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW
Sbjct: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
Query: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT
Sbjct: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
Query: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 147
WHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 146
BLAST of CsaV3_1G015100 vs. ExPASy TrEMBL
Match:
A0A1S3CJR4 (photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1)
HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0
Query: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60
MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V AS G+FTCFERDW
Sbjct: 1 MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
Query: 61 LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120
LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFWLWLIT
Sbjct: 61 LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLIT 120
Query: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 147
WHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 146
BLAST of CsaV3_1G015100 vs. ExPASy TrEMBL
Match:
A0A6J1IDS7 (photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1)
HSP 1 Score: 269.2 bits (687), Expect = 9.9e-69
Identity = 132/147 (89.80%), Postives = 138/147 (93.88%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MA+AFAT SSV GLG++SLSSPSSRSPRLVSGFIKPPV ARNP VA + GG+FTCF+RD
Sbjct: 1 MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61 WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147
TWHLGLFITLTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147
BLAST of CsaV3_1G015100 vs. ExPASy TrEMBL
Match:
A0A6J1CLD0 (photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1)
HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 0
Query: 1 MATAFATSS-VAGLG-TASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFER 60
MATAFATSS + GLG ++SLSSPSSRSPRL S F+K P AARNPLSVA ASGG+FTCFER
Sbjct: 1 MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60
Query: 61 DWLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
DWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWL
Sbjct: 61 DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
Query: 121 ITWHLGLFITLTFGQIGFKGRTEDYFSK 147
+TWHLGLFITLTFGQIGFKGRTEDYFSK
Sbjct: 121 VTWHLGLFITLTFGQIGFKGRTEDYFSK 148
BLAST of CsaV3_1G015100 vs. ExPASy TrEMBL
Match:
A0A6J1EID2 (photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 127/147 (86.39%), Postives = 134/147 (91.16%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MA+AFAT SSV GLG++SLSSPSSRSPRLVS F+KPPV ARNP V + GG+ TCF+RD
Sbjct: 1 MASAFATSSSVVGLGSSSLSSPSSRSPRLVSEFVKPPVVARNPFGVPRSFGGRITCFQRD 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIG ELAHFPSPPALTSQFWLWLI
Sbjct: 61 WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLI 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147
TWHLGLFITLTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147
BLAST of CsaV3_1G015100 vs. TAIR 10
Match:
AT1G08380.1 (photosystem I subunit O )
HSP 1 Score: 220.7 bits (561), Expect = 7.7e-58
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 1 MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60
MA FAT S+V GLG +S+++ S F+KP ++A+NPL +AGASGG+ TCFER+
Sbjct: 1 MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60
Query: 61 WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFWLWL+
Sbjct: 61 WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLV 120
Query: 121 TWHLGLFITLTFGQIGFKGRTEDYF 145
TWHLGLF+ LTFGQIGFKGRTEDYF
Sbjct: 121 TWHLGLFLCLTFGQIGFKGRTEDYF 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q949Q5 | 1.1e-56 | 72.41 | Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LT61 | 7.5e-77 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1 | [more] |
A0A1S3CJR4 | 4.3e-72 | 94.52 | photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1 | [more] |
A0A6J1IDS7 | 9.9e-69 | 89.80 | photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1 | [more] |
A0A6J1CLD0 | 1.1e-67 | 89.19 | photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1 | [more] |
A0A6J1EID2 | 6.0e-66 | 86.39 | photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G08380.1 | 7.7e-58 | 72.41 | photosystem I subunit O | [more] |