CsaV3_1G015070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G015070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 10695208 .. 10695393 (+)
RNA-Seq Expression	CsaV3_1G015070
Synteny	CsaV3_1G015070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

mRNA sequence

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Coding sequence (CDS)

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Protein sequence

MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTWR*

Homology

[Close]

BLAST of CsaV3_1G015070 vs. NCBI nr
Match: KGN64955.1 (hypothetical protein Csa_022876 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CsaV3_1G015070 vs. ExPASy TrEMBL
Match: A0A0A0LSR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166840 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64955.1	5.3e-26	100.00	hypothetical protein Csa_022876 [Cucumis sativus]	[more]

BLAST of CsaV3_1G015070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSR6	2.6e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166840 PE=4 SV=1	[more]

BLAST of CsaV3_1G015070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015070.1	CsaV3_1G015070.1	mRNA