CsaV3_1G015060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015060
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCASP-like protein
Locationchr1: 10689291 .. 10689827 (-)
RNA-Seq ExpressionCsaV3_1G015060
SyntenyCsaV3_1G015060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACATTCCGGGCTTTCTTCTCCTCCAGGTGAGAGCATCTTACTCCTCATCAGTCAACTTCCCCATTTCCCTCTTTTAATTCATCTTTTTTCTTTATGGATTCCATCTTCATTCTGTTGATCGGATCTTTTCTTTTCGTTTCTCCCCGTTTTGCCTTGTTTGATAAAGAATCAGAAATCTTTTTGGTGGATAATTGATTGTCTCATCCTTTTCTTCCTTTGATAATCGTATAATTCTCTGTTGTTTATGGATTTTTCTTTGTGATACATGGTTTTTCTATTGCAGCTTGGACTTGTGGAAGCGCTTCTCTGATCATTTCCGGGTAAATTCGACTACTTAAAACGAAGGGTTTTCTTGTTTAAAGTTCGAGGTCTGGGTCTCATGAGAATTTTTAGGGGAATGCAGAAATCGTTTTGCAAGGAGCAGCAGAGGGAGCTGGGCTGGAACAATATTTTTAGCCGAGGTTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGACAAACCCATGCCTACTGCCTTCTTGACTCTCTAA

mRNA sequence

CCAACATTCCGGGCTTTCTTCTCCTCCAGCTTGGACTTGTGGAAGCGCTTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAGGGAGCTGGGCTGGAACAATATTTTTAGCCGAGGTTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGACAAACCCATGCCTACTGCCTTCTTGACTCTCTAA

Coding sequence (CDS)

CCAACATTCCGGGCTTTCTTCTCCTCCAGCTTGGACTTGTGGAAGCGCTTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAGGGAGCTGGGCTGGAACAATATTTTTAGCCGAGGTTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGACAAACCCATGCCTACTGCCTTCTTGACTCTCTAA

Protein sequence

PTFRAFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPMPTAFLTL*
Homology
[Close]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match: KAE8652815.1 (hypothetical protein Csa_023994, partial [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  PTFRAFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPMPTA 60
          PTFRAFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPMPTA
Sbjct: 1  PTFRAFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPMPTA 60

Query: 61 FLTL 65
          FLTL
Sbjct: 61 FLTL 64

[Close]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match: KAG6583714.1 (hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 55/65 (84.62%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1  PTFRAFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPM-PT 60
          PTFR FF SSLDLW R SDHFRKSFCKE Q+ELGW NIF RGLGVTAPKARTRDKPM  T
Sbjct: 11 PTFRPFFFSSLDLWNRLSDHFRKSFCKE-QKELGWKNIFCRGLGVTAPKARTRDKPMLIT 70

Query: 61 AFLTL 65
          AFLTL
Sbjct: 71 AFLTL 74

[Close]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match: KAG7019361.1 (hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 10 SLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPM-PTAFLTL 65
          SLDLW R SDHFRKSFCKE Q+ELGW NIF RGLGVTAPKARTRDKPM  TAFLTL
Sbjct: 6  SLDLWNRLSDHFRKSFCKE-QKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 60

[Close]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match: TKR98526.1 (Casparian strip membrane protein [Populus alba])

HSP 1 Score: 56.6 bits (135), Expect = 9.2e-05
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 8   SSSLDLW----KRFSDHFRKSF-CKEQQ-RELGWNNIFSRGLGVTAPKARTRDKPM 58
           S SL  W    K     FRKSF C  ++   LGW N FS G+G+TAPKARTRDKPM
Sbjct: 190 SISLSAWAFEGKSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPM 245

[Close]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match: KAF5470938.1 (hypothetical protein F2P56_011422, partial [Juglans regia])

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 21  FRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPM 58
           FR+SF +E+ + LGW   FS+G+GVT PKARTRDKP+
Sbjct: 77  FRRSF-REEHKALGWKKAFSQGIGVTVPKARTRDKPI 112

[Close]
BLAST of CsaV3_1G015060 vs. ExPASy TrEMBL
Match: A0A4U5PQ38 (CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 8   SSSLDLW----KRFSDHFRKSF-CKEQQ-RELGWNNIFSRGLGVTAPKARTRDKPM 58
           S SL  W    K     FRKSF C  ++   LGW N FS G+G+TAPKARTRDKPM
Sbjct: 190 SISLSAWAFEGKSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPM 245

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652815.12.4e-29100.00hypothetical protein Csa_023994, partial [Cucumis sativus][more]
KAG6583714.11.2e-2084.62hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019361.11.4e-1685.71hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma][more]
TKR98526.19.2e-0555.36Casparian strip membrane protein [Populus alba][more]
KAF5470938.17.8e-0462.16hypothetical protein F2P56_011422, partial [Juglans regia][more]
BLAST of CsaV3_1G015060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4U5PQ384.4e-0555.36CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1[more]
BLAST of CsaV3_1G015060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015060.1CsaV3_1G015060.1mRNA