CsaV3_1G015040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015040
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At2g13600-like
Locationchr1: 10671712 .. 10679001 (-)
RNA-Seq ExpressionCsaV3_1G015040
SyntenyCsaV3_1G015040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCTCTTCTTCCCTCCCACTCCCACTCCCACTTCGAGCAGGCCCTCACCTTTCTCCATTTATCTCTCTCGCTCAGATTCCCCTTTCTTCTTGCTTTCTCACTTTTTATCTCTCTTCTTCAACCTTCTTTCTTCCTTCCACTCCAATGGCTTCCGTTTCTGGAGATAAATTGTTTCCCGATCCGCCCACCTCCAACGACGCCGAGCTGCCTTCAATCTAATTTATTCCGCCGCCACGGTCACTCCCTCTCACATTCTCTTGCCTCTCCGAGCAACCAAAGTTTCTTATTCTGTTTTTTCTCTCGCTTCTCCGACCCTCCCAAGGTTTTATCTTTTCTTTTTGTTTGTATGTTTGTTTGTTCACTTTTTTGGGCTATGTTTTAGTTTATGACGCTTGTGTACCCTCTGTTTATAGTTTTGATTTGGTTCGAAGTGTTTGGAGTGAGGTGTAAGGCTGCTCTGGGCAAGATTACTTATTCCAAACACTTTTTCAGACTTCGAATAAGGTTCTAACCAAGTCCTAACTGTGATACCTTCATTTTATTAATCCAGGAGTTTTTTCTAATAATTTAGAAGTGCTTTATAATTCTACTTGATAGGTTTGTTTGTAGTGTAGCATGCTGCGTGTTTTTACGTACTTTTATGTTATTTTTGTGCTTTCGCCATCTGCCACCAATTTTGAGTTACTAGACAAGATTTTTGTGTATATATTATACGTGAATTAATGTATTTAAGTAAATTTCTTTGTTGGATGGGATTTGTTACAGGTAGTTAAAAGGTGATATGATGTATTAGTGATTCCGAGTGTTTTTACATTTCCTGGTTTGGCATAGGAAGGTTAATATCATACACAAATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGTTATATCCCTCACTCCCTCCTGTCTACGGCTCTACCATAGACTGTAGTTCTATACTTTTATTCTTTCTCTACTTTTTGGGAAAGGCTAAATTACAGAAAACGTCTGTCCAAACTGTGTACTTTGTTTTAACAATGCCTCTAAACTTTTTAAAGTTCCTTTTGTTGGATTTACTCTTTCCTCTTTCCTCTTCTGGTGTATTCTTGCTCATATGTTTCTCAATCAAAACTCAATTTCTTATTAAAATAGTTGCTTTAACACGTATTAACTTCACATTATAATATTTTAGAACTTATCATATAAAAAATAGCAAATAAAAGATTAAACTTGACATAGAAGATACATCAAATGGTAATTAATCTTTGATGTTTATGACCAGTCAATATTTTTTTTAAACGTCAGTGTTATAAAATCTTAATCTTTTTTCGGTATCAAGTGAATTTTAACATGACCGTCGTCACTTTTTAAATTTAACTATCTCCGTTGGACAATCTAGTGCTAACTGTATTCATACAAATTCTAATTATTTCCAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGTTTGTGCTCCTCTGTTTTCCTCCAAAACCATCTCTTACACATGTACTCAAAATGTGGGTTAATAAATGAGGCTCTTCAGATTTTTTTGGACACCAAGCAACGCAATGTCATTACTTGGAATACTATTCTTAATGGGTTGTTGGATTCTGGTCGTGTGAGGGACGCAGAGAAGATGTTTGATGAAATGCCCCTTAGAGATCCTGTTTCTTGGACTGCAATGATGTCGGGCTACTTCCGTAATGGTCAAGCTATGGATACTATTAAACTTTTTGTTTTGATGTTTCAGGATTCAGATTATGTTCCTGACTTGTTTTGTTTCTCTTGTGCAATGAAGGCTTGTAGTAGTGTTGGTTACATAAGGATTGCTCATCAGTTGCACGGTCTGTCAGAGAAATATGGCTTTGGAAACAACAAAGTCATCCAAAATTCTATCATCGATATGTATATTAAGTGCGATGCTATTTATGCTGCTGAGCAAGTGTTTCTAAGGATAGAAAAGCCAAGCTTATTTAGTTGGAATTGTATGATATATGGTTACTCTAAATTGCACGAGATGGGACGGGCAATTGACACTTTTAGACAAATGCCTGAACGAGATTCTGTCTCTTGGAACACAATTATTTCAGCATTTTCTCATCATGGTTTGCACATACAGAGCCTTGGTACGTTTGTTGAGATGTGGATTCAGGGTTGTCAACCAAATTCAATGACATATGCAAGCGTTCTTAGTGCATGTGCTAATATCTATGATTTTCAATGGGGTAAACATTTGCATGCTCGAATTGTCCGCGTCGAACCCTTTTTGGATGTTTTGGTAGGGAATGGATTGGTCGATATGTATGCAAAATGTGGACTTATTGATGCTTCAAAAAGGGTATTTAACACATTAAGGGAACACAATGTAGTAACATGGACGTCACTAATAAGTGGAATTGCACACTTTGGTAGTCAAGAAGAAGTTTATGACATTTTTTATCAAATGAGAAAAGATTGTGTTATTATGGATAATTTCATTCTTGCAACCATTCTTGGTGTATGTGAAGGGGAGACAAATATTTCAATTGGGGAGCAATTACATGGATTCACGGTGAAGACTGGGATGAATTCATCTGTGCCCGTAGGCAATGCTACTTTGTCAATGTATGCAAAATGTGGAGATTTTGAGAAGGCAAGTCTTGCTTTTGAAACGATGGCTGCTCACGATGTTATTTCATGGACAACAATGATCACTTCGTTCTCCCACAGTGGCAATGTAGAAAGGGCACGAGATTATTTCAATCGAATGCCGGAGCGTAATGTCATAAGTTGGAATGCAATGTTAGGTGCATATTGTCAGAACAGTTTTTGGGAAGAAGGTTTAAAATTGTACATTCTTATGCTAAGACAGGAAGTTAGGCCAGATTGGATCACCTTTGTTACCATGATCGGTGCTTGTTCTGAGTTAGCGATTTCAAAACTTGGAACACAAATTCTATCCCAAGCTGTTAAAGTAGGACTTGGTTCTGATGTTTCAGTTGTTAACAGTGCAATCACCTTATATTCTAGATGTGGTAGAATTGAAGAAGCGCAAAATCTTTTTGACTCAATACAAGAGAAAAACTTGATTTCTTGGAACTCAATAATGGGAGGATATGCTCAAAATGGTGAAGGCATGAAGGTGATTGAAATTTTTCAGAACATGTTGATGGCTGGTTGCAAACCTGATCATATCACGTATATAGCAATTCTCTCAGGTTGCAGCCACTCAGGTCTTGTAAAAGAAGCAAAATATCATTTTAACTCCATGACTAAAGATTTTGGCATCTCTGTAACTTTGGAGCATTTTGTGTGTATGGTAGATTTGTTTGGTCGAGCTGGGTTGCTAAAGCTGGCTTTGGATATGATTGATCAAATGCCATTTAAGCCGAATGCCAGTATATGGGGTGCTCTACTCAGTGCTTGTAGGATCCACCATGACACTGAAATGGCAGAGTTGGCAATGAAGAACTTGCTAGAATTGAACACTGAAAACTTTGAAAGTTACATTTTGCTTGCAAATACCTACTCTAGTTTTGGGAGGCTAGAATGCGTTTCTGAGGTGAGACAAGTGATGAAAGAGAAGAGAGTACAGAAAGATCCTGGCTGTAGTTGGATAGAGGTGTGCAACAGGGTCCATGTCTTTACTGCGAATGATACAAGTCATCCACAAGTCAAGGATATTTACAAGGCATTGGAAGACATTGTTAAGAAGATCAAAGATGATTATGGTTATTTTGATAGGTCGAGTTTTGTTGGGTATCGTAGTGAAGCTTGCTATTGCTTTTGGTTTGATCAACTTGCTTGATTGCATGCCAATCTATGTGATGAAAAACCTTCGAGTTTGCAATGATTGTCACCAGGTGATGAAATTGATTTCTCTTGTTGTCATGAGGAAATTTTTTATGCAAGATAGGTATCGATTTCATCACTTGGAGAAGGGAAGTTGCTCTTGTGGAGATTATTGGTAACTATAAAGTTAGAGTTTCGATTCTTTGATTTATGAAAGGAAAGATGCTTGGAAGAGAGATTGAAAAGAAATTGTGGATTGGGTTTGAAAGGGATAGACTTGTTGGAAAAGAATTCTTCTCTAAAGGTGGTAGTGGTAAACTATGTACTTAGCGTCGATTTTCCCCTCCGCATTCCATGGTCTTTTGTGTCCAACATTTGACTCAAAATTTAAATGGTACTTATAAGAATGACATTGTAGCTACTTTATTTTACAATGCATCGAAAACATATCGTGAATCAATGTTCTTAGAATTGTGGAGAAGTATTCTTGTATTCCCTAATGGTTTAGGAAAATATTTAAACGACGTTGGAATAACAGGATGCTCTCGTGTTCACTGCCCAGGAAGATAATATAACATGATGACAACAAATAAAGCACAGTCCATGAATTCTATACTGAAAGAACCTAGAGATTTGCTTATTGCTTATTGCTTCATTCCTTGAACATGTTCGAGCTTTGCTACAACGTTAGTTTTGGGAGCGTCGAGAAGAAAGCATTAGAGTGATGTCTACATTGACTAAATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAATCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAGTCAAAAGTGCATTTTTATTTTGAAACTCCTACTGAAATTTTAATAGGTGCGAGATACATGAGAGATAAAACATTAAGGTGCGAGATAAAATATTAGGGCCTAATAAACTTGCATAGAACCATTCTAAACGCTTTAGAAATGGTAGCAATTTCATTTTGAAACTCTTACTGAAATTTTGGTAGGTGCGAGATAAAACATTAGGGTCTATTAAACTTGCTAAACATGCATAGAACCATCTAAACGGTTTAGGAAGAGTAGCATTTTCGTTTTGAAACTCTTAGTGAAATTTTTGTAGGTGCAAGATAAAACATTAAGACCTAATAAACTTGTTAAAGATGCATATAACCACTCTAAATGGTTTAGGAATGATAGGAATTTCACTTTGAAACTCCTAGTGAAATTTTGAAATGTGTGAGATAGGTGCAAGATGCATGTGAGATACACAAATTCATAAGAGGCTTACTAAATCAAATTGCTTGCACTTCTAAACCTATATTATAACACCTTTACTAAAATGATTAATAGTAGAAGGAAAGCCTATAGTTCTTATATTTAGGTTTAGGAACAAAACTCATTGAATCACTTGTTTTCACAGGACGAATCTTAAATAAACTGGTTGCACATGGGACGAATTAATATGGGGAACTGCTTGGTTGTACAAGATAACTAACCAATATAACAAAGATTACATTTTATTGAAACTATATCACTAAAAACATCAACAAAGTCAATAACAATAATACGACTTTTGATTATAATAACGTGATTAATTCTAAAAATGATAATGTCTTTTAACATTGTTCTACTAGTAGCTTTGCTGAATTTGGATGAAATACCAAATATGCTAGGATTAATGTCCTAAACTCCAAGGTGTATATATATATATATTTGTAGCATACGGAGGATGAAAATATGTGTGTCTGTAGGACATATGCATTTATTCTCTATAGGTATGTTACTTCCAATCATGAATTTCTTACTCACTAGAAGTTATGCATTTCTTCTCACAGTTTTACAAATAATTTTTATAAATCAAATGTGAACCAATCATGAGAAAATAAAACAATCATCATAACAAATTTCTTGCATTCCTTTAGTACATAATACTGTAGACATATGCATCAATTTGTTTGCTGAAAAATCTCAATGACATCAAAGAGAAGGGTCAGACAAATTTAATGGTATATCTAAAATGTGCTTAACAAAAATCTCATATCTCTACAGACAACTTAAACAACAATGATATATAAAAGAAAATAAAAACTCAGATTTTATTACTCACTTGACTTCAAAGAAGATGAATACGACATTGATAACGGAGAGAGGTGGAGAAGAAATGAAGAGGTCCGATGAAAACGACGCTGAAGTCGAAACTATTGGCTCGAAGAGTTCACTATAGTTTAAGTCGAAACTAAAAATAGAGAAGCGTTCACGGAAGTTGAAGTCGAAACTAAAAACAGAGAGGCGTGGAGAACAAATAGATCTAAGAGGCGTTCAATGAAGGCACCAAAGTTGAATGAAGTGGAAGTGAAGTTAAAGTGGAAACGGGAGAGTTCAGAAAGAACGAGATTTTTAGGTTAAAGAGAAGAAAAGGAGAGAAAATAAACAAAGGACAATTTGGACCTTTCACTCTCAATTTGTCCTAAAAATCTACTTTTTCAAAATCAATCTTAAAACTCATTTACTCCTTTCTTTTTTACCCTATTTTTGTCAATTTCCCAATCTTTTCTCCTTCCTTTGAATTCTTTCTCACTATCTGTTCATAATTTTTCCCTTCACAATTTTTGGTAAGTTTTTCTTTTTCATCTATATTTACCCTTCTCGCTTTCCTTCATCATTTCTCTCTGCTCACTCTACCATGTCCTCCATCTTCCAGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGACGAGCAAGAGAAAGAAACAAGACTAAATGGGAGCTGCATGCCTCATGCACATTCTTAAGACAAATATGTATTTCACATGTGGCTGACGTAATTAAGTGGAAAGTCCTTTTTTAACCTTGGACAAATTTTCACTAAGCCCCTAAAAGGAGTCATTTGTACAAATTGTCCAAGAAAACAACCTAAGATTACAGAAACTTTGCTGTGTTTTATTCTTTTGGATGAGCAAAATCACCTAGCATCAATCTCTC

mRNA sequence

ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA

Coding sequence (CDS)

ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA

Protein sequence

MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKSGKHNIKYVFFSLMRNERKQ*
Homology
[Close]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: KAE8652814.1 (hypothetical protein Csa_022802 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS
Sbjct: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKS 120
           QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKS
Sbjct: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKS 120

Query: 121 GKHNIKYVFFSLMRNERKQ 140
           GKHNIKYVFFSLMRNERKQ
Sbjct: 121 GKHNIKYVFFSLMRNERKQ 139

[Close]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_011654503.1 (pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus] >XP_011654510.1 pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus] >XP_031740501.1 pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS
Sbjct: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACTYLGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_008461109.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_008461117.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_016903059.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 1   MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_016903050.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903053.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903054.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903055.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903057.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903063.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 50  MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 109

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 110 QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 152

[Close]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_038894463.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-33
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           M+CYTK+ALYT  SKTR ILR+F GLP QVHH PTQE  LYGK NL YDPFAQLSYME+S
Sbjct: 1   MECYTKLALYTRLSKTRFILRVFHGLPHQVHHSPTQEQVLYGKFNLGYDPFAQLSYMELS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           Q FFEAMKACT+LGSTS+ASKLH QLISTGL   + L    ++
Sbjct: 61  QKFFEAMKACTFLGSTSVASKLHAQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A0A0LT54 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G166820 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS
Sbjct: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACTYLGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S3CEF4 (pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 1   MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S4E4B1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 50  MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 109

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 110 QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 152

[Close]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A1S3CDE3 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 17  RIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGST 76
           R+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+SQNFFEAMKACT +GS 
Sbjct: 61  RLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEISQNFFEAMKACTLIGSR 120

Query: 77  SIASKLHGQLISTGLPKDLQLPGQFIN 104
           SIASKLHGQLISTGL   + L    ++
Sbjct: 121 SIASKLHGQLISTGLCSSVFLQNHLLH 147

[Close]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match: A0A6J1I7S2 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471635 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           M C TKVALYT   KTR  LRLF GLP QV    TQ+ FLYG+ NL +DPFAQLSYME+S
Sbjct: 1   MFCCTKVALYTCLPKTRFFLRLFHGLPPQVCRFSTQQQFLYGRFNLGHDPFAQLSYMELS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           Q FFEAMKACT+LGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QKFFEAMKACTFLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652814.11.4e-74100.00hypothetical protein Csa_022802 [Cucumis sativus][more]
XP_011654503.11.4e-4589.32pentatricopeptide repeat-containing protein At2g13600 isoform X1 [Cucumis sativu... [more]
XP_008461109.16.1e-3878.64PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3... [more]
XP_016903050.16.1e-3878.64PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1... [more]
XP_038894463.14.5e-3371.84pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Benincasa... [more]
BLAST of CsaV3_1G015040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT546.6e-4689.32DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G1668... [more]
A0A1S3CEF43.0e-3878.64pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis... [more]
A0A1S4E4B13.0e-3878.64pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis... [more]
A0A1S3CDE32.5e-2975.86pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis... [more]
A0A6J1I7S21.6e-2867.96pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucurbi... [more]
BLAST of CsaV3_1G015040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015040.1CsaV3_1G015040.1mRNA