CsaV3_1G014910 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G014910
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Reverse transcriptase
Location	chr1: 10555438 .. 10556019 (-)
RNA-Seq Expression	CsaV3_1G014910
Synteny	CsaV3_1G014910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAGTAAAGGTTTAAGTTGCGTTTTAGATAGTTTGATACTAGTTTGGTATTAGAGCATATCTAAAAGTCTTGGAAGTTAAGATGGTTTTAGCAAAATCTGAGAAGTTGAGTTAGTTCACTAATTGTTATACTAATATGCATTGTTGTTCTCTGTCAGAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCAGTAAATTCGAATGTTAAGAGAGTGATAGAAGAGGAGTTATATAATCGAGTGGTGCAAAATTAAAAGATAGTTTATCAAGAAAGCCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

mRNA sequence

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Coding sequence (CDS)

ATGCCAATCTCTTTAACAGACACAATCCTTAAGATTCAGGGTTTACAGGAACAAAATGTTGAGAAAAAATCATGTTGCGAGGAAGAGGACATGGACGACCAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGACAAAGAGTTTTCAAGAACAGTAGAACTAGAGCAGGCGAATAAGTGGTTAAGAGCATTGGAGAAGTGTTTTAGGGTACTGCAGTGCCTCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACTGA

Protein sequence

MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED*

Homology

[Close]

BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_022824 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]

BLAST of CsaV3_1G014910 vs. NCBI nr
Match: TYJ97513.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 32  DDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFR 91
           ++Q A  AQ++  L    PS  +K YGIE++K  G   F  +++   A  WL  LEKCF 
Sbjct: 30  NEQFARTAQEIGRLERAEPSDPEKAYGIERLKKLGATMFEGSIDPTDAKNWLNMLEKCFD 89

Query: 92  VLQCLEERKIDLAAFLLHRKAE 114
           V+ C EERK+ LA FLL ++AE
Sbjct: 90  VMNCTEERKVRLATFLLQKEAE 111

[Close]

BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KAA0037398.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 32  DDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFR 91
           ++Q A  AQ++  L    PS  +K YGIE++K  G   F  +++   A  WL  LEKCF 
Sbjct: 24  NEQFARTAQEIGRLERAEPSDPEKAYGIERLKKLGATMFEGSIDPTDAKNWLNMLEKCFD 83

Query: 92  VLQCLEERKIDLAAFLLHRKAE 114
           V+ C EERK+ LA FLL ++AE
Sbjct: 84  VMNCTEERKVRLATFLLQKEAE 105

[Close]

BLAST of CsaV3_1G014910 vs. NCBI nr
Match: KAA0025769.1 (hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684.1 hypothetical protein E5676_scaffold447G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  EEDMDDQGASQ-AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRAL 87
           +E+M+++  ++ AQ+L+       +  +KKYGIE++KA G   F  TV+  +   WL  +
Sbjct: 105 QENMEERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLTLI 164

Query: 88  EKCFRVLQCLEERKIDLAAFLLHRKAED 115
           EKCF V+ CLE+RK++LA FLL ++AED
Sbjct: 165 EKCFWVMHCLEDRKVELATFLLKKRAED 192

[Close]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL
Match: A0A0A0LVF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60
           MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE
Sbjct: 1   MPISLTDTILKIQGLQEQNVEKKSCCEEEDMDDQGASQAQQLSPLWTQRPSHRKKKYGIE 60

Query: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED
Sbjct: 61  QVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 27  EEEDMDDQGASQ-----AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANK 86
           EEE + D+ A +     AQQL           KK +GIE+VKA G  EF+     E+A K
Sbjct: 20  EEEALYDRFAQRLINALAQQL-----------KKNFGIERVKALGATEFNGIENHEEAEK 79

Query: 87  WLRALEKCFRVLQCLEERKIDLAAFLLHRKAED 115
           W+R LEKCFRV+QC +ER+++LA FLL  +AED
Sbjct: 80  WIRTLEKCFRVMQCPKERRVNLAVFLLLERAED 101

[Close]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL
Match: A0A5A7T3N0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G001060 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 32  DDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFR 91
           ++Q A  AQ++  L    PS  +K YGIE++K  G   F  +++   A  WL  LEKCF 
Sbjct: 24  NEQFARTAQEIGRLERAEPSDPEKAYGIERLKKLGATMFEGSIDPTDAKNWLNMLEKCFD 83

Query: 92  VLQCLEERKIDLAAFLLHRKAE 114
           V+ C EERK+ LA FLL ++AE
Sbjct: 84  VMNCTEERKVRLATFLLQKEAE 105

[Close]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL
Match: A0A5D3BDX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00230 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 32  DDQGASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFR 91
           ++Q A  AQ++  L    PS  +K YGIE++K  G   F  +++   A  WL  LEKCF 
Sbjct: 30  NEQFARTAQEIGRLERAEPSDPEKAYGIERLKKLGATMFEGSIDPTDAKNWLNMLEKCFD 89

Query: 92  VLQCLEERKIDLAAFLLHRKAE 114
           V+ C EERK+ LA FLL ++AE
Sbjct: 90  VMNCTEERKVRLATFLLQKEAE 111

[Close]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL
Match: A0A5A7SKG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00920 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-09
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 28  EEDMDDQGASQ-AQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRAL 87
           +E+M+++  ++ AQ+L+       +  +KKYGIE++KA G   F  TV+  +   WL  +
Sbjct: 105 QENMEERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLTLI 164

Query: 88  EKCFRVLQCLEERKIDLAAFLLHRKAED 115
           EKCF V+ CLE+RK++LA FLL ++AED
Sbjct: 165 EKCFWVMHCLEDRKVELATFLLKKRAED 192

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64939.1	3.1e-56	100.00	hypothetical protein Csa_022824 [Cucumis sativus]	[more]
KGN61535.1	1.3e-09	47.31	hypothetical protein Csa_006696 [Cucumis sativus]	[more]
TYJ97513.1	1.1e-08	43.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037398.1	1.1e-08	43.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0025769.1	1.9e-08	42.05	hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684...	[more]

BLAST of CsaV3_1G014910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVF8	1.5e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1	[more]
A0A0A0LI31	6.2e-10	47.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
A0A5A7T3N0	5.3e-09	43.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BDX4	5.3e-09	43.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85...	[more]
A0A5A7SKG0	9.0e-09	42.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_1G014910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014910.1	CsaV3_1G014910.1	mRNA