CsaV3_1G014490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G014490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Splicing factor U2af small subunit B-like
Location	chr1: 10005676 .. 10009076 (-)
RNA-Seq Expression	CsaV3_1G014490
Synteny	CsaV3_1G014490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTTCCCATGAACATTCTAGAGAAACAGCTTAAATAAAACTCCACCCATCATCATTTTCTTTCTCTTCTTCTTCTGCTTCTTCTCCATTTTCATCTCATTCCAATTCTGTACCCAATTTCTTCCTTTCTCCCACGGCTGGAAATGGCGGAGCATTTGGCATCCATATTCGGAACCGAGAAGGACAGAGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGCCACGGTGATAGGTGTTCACGGTTGCACACCAAGCCTAGTATCAGCCCCACCCTCCTGCTTTCTAATATGTATCAGAGACCTGACATGATTACTCCTGGTGTCGACGCGCAAGGGAATCCAATTGACCCTCGCAACATCCAGGACCATTTTGAGGTACATTTTCTCTTGTTTACTACTATTTTTATCATGAATTTTCACGTTATTATTATTATTTTTGAACGGGGGTCGGGGTGGATCTTGGCTTTTTTTTTAGGTTGGATTGCTATTATTTTTATCGTAATCTTAGACGTCGTTTTGTTTAGTTGATTTTCAAGTGATCGTGTTATCATGGATAGAGTAAGATATCTTTTTTGTGTCCTCATTAACTTCCTTACGCTCTTGGCGTGGCTTGTAAATTTTTTTATTTTGAATCATCATTTGCGCGTGGAACAATTGTAGCTTTATTGTTGATCTGTCTACATTTCAGGAGTTCTATGAAGATCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTATGTGACAATCTAGCTGACCATATGGTAATACTCTCCTCTTTGCTCATTGTTTGAAGGGAAATAATTTTACAAATCTGCCTTTCAACTTTGATGTATGCTATTTCATTGTAGAATTAGCTAATGAGTAGTTATCTAATGATGTGTTTGATTAGGTGGGCAATGTTTATGTTCAATTTCGAGAGGAGGAGCAAGCAGCAAATGCTCTTCGGAATCTTAGTGGCAGATTCTATGCTGGTCAGTTGAAGTTTCTGTCTTCTCCTGCCCCTTTATTTTTCCCTTCATATTTATACTTTTTGTCTGCAGCTTTTGATTTTAGAATCGGGTGAAATGAATCTGGTAACCTATGTATATAACTGTTTCTTTGCAGGACGCCCGATCATTGTCGACTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGGTATTGCAATTTCATGCATTTGAAGAGGATTGGCAGGTATATTATCTTCACCACCTCCCTCTTTTCCCTCTGAGATGTATTATTCTTCCTGTTGATATTGTATTGCCACTTCTTGTAAGTTGTATGCGTACTTTATTTGATAGCCATGGTAATTTCTTGTCTTTCAGAGAGCTGAGGCATGAACTGTTTGCAATGTATCGTCGAAGGCATAGTCATAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGAAGTTATGAAGAACGCTCTTATGGCAAGCATGGTCATAGTCGAAGGTATGATGAGAGAGATGCGTATCATGAAAGTCGGAGTAGGAGGCATAGGACTACAAGCCCTGGCCATAGAAGCAGGAGCCGTAGTCCACGTGGAAGGAAGAACCGAAGTCCAGTTAGGGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAAGGAGAGAGAACAAGGAAATGATAATAATGCCAATTCTGATGACAACAGAAATAACCATGAGAAAAGCTACGACAGTGAGGTGAAGTATGCAAATCAAACCTGTGGCTATGAGGAGCAGCAACAGCGGCAGCCTCCTGAGCAAGGCTATGGTTACTGATCTGTTTACTTGAACTTAGGTACTACTTCCAAGGTTTCTGTTTGAGGTCTTGCATTCATTCCTTAAAATGTCCCTAGTAGTGTTATCCCAATACGTAAGAAGTTGCTGGTTCTAGTTATCTGATCTCCCCAACATCTCTTTGATCTTTTTTTAGCCATTAGAGTAGGTAACAACATTTTTTTCATTAGTGGATTGGTTAGGAACGTGTCCAGCTTAGGGAACTTAAAAGAAAAAATAGAAAAATGGAAGGGGAAACTGTTTGCGAGACAGAACAAATGAAACAGTGCTAGAAGATGCAAGAAATGGTGGTTAAAAATTAAGTTCTTTTCCCCTATTGGATGTTAACCAGTTTATTCCCTTTGATTTGTGGAAAGTGAGAGAATGTGTAGAAGGAAACCCCCTGTCTTATCAGAAGATTCTTCAGTTAACCCTGTGGTACATCTAGAAAGCATCATAAAAATTGAAATAGATCTTTGAAAACCTCTTTTTCTTGACAGCGATTTGTTTTTGGACGTGTGTTTGTCTTCATTTAAATTTCATTAACATGTTTCAATTGCAGTCATGGCATTGATACTTACAATATCCATAATTCTATAGCAAACGTATAAATTTGATTTTACAGTCAGGGATTAAGACTGCTGCCCATGAGGACTTGTGAACGATTCCATTTATCGTATTACGGTTTCTTTCCCTTATGAACTTTTTTGCATTACCTTTTTGTTGATATTAAGAAAAAATGTGATCTCATCATTATCTAAGTTTTTGCAGGTTCAGGTTGTTTCCCTGCTTCTAGACTCTAAATTTTCCAAGCTAAGATGTGATCATGAAATTTTTGTACAGGTTAATATGGTCCACTGTGTAGGATGATTGGCTTTACAGGATGTGCAGGTTTTGGCCCTAACAAAGATGAGGCATTCGTGTGGATGGCTGAAGACTGAAGGCAACATTGAGTCACTTTGGCGTCTTTAACATTGATGTGGTGGGCTGCAATTGCAGGTTAGGGATCATGCTAGAAACATTTTGTATTTGTTTCATATATTGTTGTTAAAAGGAAGAGAACTTGGGGGTGGGGGTGTTTGTGATGGAGTAAATAGCCTTAAGATATATCTGATTGTGACTTTCTTTAAAAACTGGACTCACTAGTGATTTCTTATTGAGTGGTATAGAAAGCTCTTTCTCTATATTATATGATTAGATTAGATGTTAGAATATATAGCATTTACATGTGATTTAACTGTTTTGGGATTTAATAGGTTAGGGGATAAGTTTAGATTTATGATATACAATATAATTTTTGGATCTTTCATCAAACACGTTCCAATTTTGGATATTTTTGCGTGCAAGGGCAGTAGAATTTTGTAAGGTTAGGGAACTCATATTTCATTCAAATTTTACAAACTTCTTACATTTTATGGTGCCACAAATATTCCGTTATTTAATTTTCATATTTTATTTAATCAAGTGTGTTTATGCTTATTTTACCATTATTTTGTTTGAGTTACATATTTTTTAATCTTTAATATTTAAAGATACAAGCTGAGTTAAATTCTTATTGGCTAACTTTTATATAT

mRNA sequence

ATGGCGGAGCATTTGGCATCCATATTCGGAACCGAGAAGGACAGAGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGCCACGGTGATAGGTGTTCACGGTTGCACACCAAGCCTAGTATCAGCCCCACCCTCCTGCTTTCTAATATGTATCAGAGACCTGACATGATTACTCCTGGTGTCGACGCGCAAGGGAATCCAATTGACCCTCGCAACATCCAGGACCATTTTGAGGAGTTCTATGAAGATCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTATGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCGAGAGGAGGAGCAAGCAGCAAATGCTCTTCGGAATCTTAGTGGCAGATTCTATGCTGGACGCCCGATCATTGTCGACTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGGTATTGCAATTTCATGCATTTGAAGAGGATTGGCAGAGAGCTGAGGCATGAACTGTTTGCAATGTATCGTCGAAGGCATAGTCATAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGAAGTTATGAAGAACGCTCTTATGGCAAGCATGGTCATAGTCGAAGGTATGATGAGAGAGATGCGTATCATGAAAGTCGGAGTAGGAGGCATAGGACTACAAGCCCTGGCCATAGAAGCAGGAGCCGTAGTCCACGTGGAAGGAAGAACCGAAGTCCAGTTAGGGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAAGGAGAGAGAACAAGGAAATGATAATAATGCCAATTCTGATGACAACAGAAATAACCATGAGAAAAGCTACGACAGTGAGGTGAAGTATGCAAATCAAACCTGTGGCTATGAGGAGCAGCAACAGCGGCAGCCTCCTGAGCAAGGCTATGGTTACTGA

Coding sequence (CDS)

ATGGCGGAGCATTTGGCATCCATATTCGGAACCGAGAAGGACAGAGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGCCACGGTGATAGGTGTTCACGGTTGCACACCAAGCCTAGTATCAGCCCCACCCTCCTGCTTTCTAATATGTATCAGAGACCTGACATGATTACTCCTGGTGTCGACGCGCAAGGGAATCCAATTGACCCTCGCAACATCCAGGACCATTTTGAGGAGTTCTATGAAGATCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTATGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCGAGAGGAGGAGCAAGCAGCAAATGCTCTTCGGAATCTTAGTGGCAGATTCTATGCTGGACGCCCGATCATTGTCGACTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGTGGTGGGTATTGCAATTTCATGCATTTGAAGAGGATTGGCAGAGAGCTGAGGCATGAACTGTTTGCAATGTATCGTCGAAGGCATAGTCATAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGAAGTTATGAAGAACGCTCTTATGGCAAGCATGGTCATAGTCGAAGGTATGATGAGAGAGATGCGTATCATGAAAGTCGGAGTAGGAGGCATAGGACTACAAGCCCTGGCCATAGAAGCAGGAGCCGTAGTCCACGTGGAAGGAAGAACCGAAGTCCAGTTAGGGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAAGGAGAGAGAACAAGGAAATGATAATAATGCCAATTCTGATGACAACAGAAATAACCATGAGAAAAGCTACGACAGTGAGGTGAAGTATGCAAATCAAACCTGTGGCTATGAGGAGCAGCAACAGCGGCAGCCTCCTGAGCAAGGCTATGGTTACTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGRELRHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTSPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDSEVKYANQTCGYEEQQQRQPPEQGYGY*

Homology

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BLAST of CsaV3_1G014490 vs. NCBI nr
Match: XP_004139466.1 (splicing factor U2af small subunit B [Cucumis sativus] >XP_011654262.1 splicing factor U2af small subunit B [Cucumis sativus] >KGN64894.1 hypothetical protein Csa_022738 [Cucumis sativus])

HSP 1 Score: 654.4 bits (1687), Expect = 5.0e-184
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS
Sbjct: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS
Sbjct: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           EVKYANQTCGYEEQQQRQPPEQGYGY
Sbjct: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 326

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BLAST of CsaV3_1G014490 vs. NCBI nr
Match: XP_008461981.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_008461988.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0065889.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa] >TYK15128.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 636.7 bits (1641), Expect = 1.1e-178
Identity = 317/326 (97.24%), Postives = 321/326 (98.47%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFAMYRRR SHSRSRSRSPYRHRSYEERSYG+HGHSRRYDERDAYHE+RSRR RTTS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSP REGSEERRAKIEQWN+EREQGNDNNA SDDNRN+HEKSYDS
Sbjct: 241 PGHRSRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQGNDNNAKSDDNRNSHEKSYDS 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           EVKYANQTCGYEEQQQRQPPEQGYGY
Sbjct: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 326

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BLAST of CsaV3_1G014490 vs. NCBI nr
Match: XP_038894442.1 (splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038894443.1 splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038894444.1 splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038894445.1 splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 611.3 bits (1575), Expect = 4.9e-171
Identity = 305/326 (93.56%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFA+YRRRHS SRSRSRSPYRHRSYEERSYG+HGHSRRYDERDAY+ESR  RHRTTS
Sbjct: 181 RHELFAIYRRRHSRSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYYESRGMRHRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSPVREGSEE RAKIEQWN+EREQGNDNN NS DN+N+HEKSY  
Sbjct: 241 PGHRSRSRSPRGRKNRSPVREGSEESRAKIEQWNREREQGNDNNGNS-DNKNSHEKSYSG 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           +VKY+NQTCGYEEQ+Q+ PPEQGYGY
Sbjct: 301 DVKYSNQTCGYEEQRQQLPPEQGYGY 325

[Close]

BLAST of CsaV3_1G014490 vs. NCBI nr
Match: XP_023519661.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519662.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519664.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 592.0 bits (1525), Expect = 3.1e-165
Identity = 300/330 (90.91%), Postives = 314/330 (95.15%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFA Y RR SHSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKERE-QGNDNNANSDDNRNNHEKSY 300
           PGHR SRSRSPRGRKNRSPVREGSEERRAKIEQWN+E+E Q N NNANSD N N+HEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQENYNNANSDGNENSHEKSY 300

Query: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 327
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330

[Close]

BLAST of CsaV3_1G014490 vs. NCBI nr
Match: XP_022970323.1 (splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970326.1 splicing factor U2af small subunit B-like [Cucurbita maxima])

HSP 1 Score: 590.5 bits (1521), Expect = 8.9e-165
Identity = 297/329 (90.27%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFA Y RR  HSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFASYHRRRGHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYD 300
           PGHR SRSRSPRGRKNRSPVRE SEERRAKIEQWN+E+EQ N NNANSD N ++HEKSY+
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREESEERRAKIEQWNREKEQENYNNANSDGNEHSHEKSYN 300

Query: 301 SEVKYANQTCGY--EEQQQRQPPEQGYGY 327
            +V+Y NQTCGY  ++QQQ+QPPEQGYGY
Sbjct: 301 GDVQYENQTCGYKQQQQQQQQPPEQGYGY 329

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 6.7e-107
Identity = 205/294 (69.73%), Postives = 230/294 (78.23%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           G+DAQGNPIDP  IQ  FE+FYED+F+EL+KYGEIESL+VCDN ADHM+GNVYVQFREE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAA AL+ L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K IGR+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RHELFA---MYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYH-------- 240
           R  LF      RR HSH RSRS SPY +R    R Y +   SR  D  D Y         
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYR----RDYDRRSSSRSRDHDDYYRGGSHDYYR 240

Query: 241 ---ESRSRRHRTT--SPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKERE 279
                 S RHR++  S G R R RS    + RSPVR+GSEERRA+IEQWN+ERE
Sbjct: 241 GGSRRSSERHRSSYDSDGSRRRHRS----RTRSPVRDGSEERRAQIEQWNRERE 286

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.5e-106
Identity = 205/293 (69.97%), Postives = 231/293 (78.84%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD QG P+DP  IQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFAMYR---RRHSHSRSRSRSPYRHRSY-EERSYG------KHGHSRRYDERDAYHE 240
           R +LF  YR   RR S SRSRS SP R R +  ER  G      +HG+ +R  +R   H+
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 ---SRSRRHRTTSPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQG 281
                 RRH     G   RSRSPR       VREGSEERRA+IEQWN+ER++G
Sbjct: 241 RDGGGRRRH-----GSPKRSRSPRN------VREGSEERRARIEQWNRERDEG 282

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 7.0e-104
Identity = 198/298 (66.44%), Postives = 227/298 (76.17%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQG P+DPR IQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K + REL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFAMYRRRH-----SHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRR 240
           R +LF  YRR +     S SRSRS SP   R  + R       S R  +R+ Y     + 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGK- 240

Query: 241 HRTTSPGHRSRSRSPRGRKNRSPV--------REGSEERRAKIEQWNKEREQGNDNNA 286
            R++    R      RGR+  SP         REGSEERRA+IEQWN+ERE+  +  A
Sbjct: 241 -RSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA 296

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 5.2e-99
Identity = 193/304 (63.49%), Postives = 224/304 (73.68%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQG PIDP  +Q+HFE+FYED+++EL+K+GE+E+LNVCDNLADHM+GNVYVQFREEE
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QA  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+IGREL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEE------------------RSYGKHGHSRRY 240
           R +L+   R R SH RSRS SP   R   +                  R  G  G    Y
Sbjct: 181 RRKLYG-GRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDGY 240

Query: 241 DERDAY-------HESRSRRHRTTSPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNK 280
              D+Y             R+     G R R  SP  R+ RSPVRE SEERRAKIEQWN+
Sbjct: 241 RGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSP-PRRARSPVRESSEERRAKIEQWNR 300

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-65
Identity = 130/235 (55.32%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQEL-NKYGEIESLNVCDNLADHMVGNVYVQFREE 120
             D     +    +Q+H++EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 EQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGRE 180
           E A  A+ +L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK I RE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSR 235
           LR EL+   R++H   RSRSRS  R     +R  G  G      ERD    SR R
Sbjct: 181 LRRELYGRRRKKH---RSRSRSRERRSRSRDRGRGGGGGGGGGRERDR-RRSRDR 231

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL
Match: A0A0A0LVA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 2.4e-184
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS
Sbjct: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS
Sbjct: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           EVKYANQTCGYEEQQQRQPPEQGYGY
Sbjct: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 326

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL
Match: A0A1S3CFU2 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103500459 PE=4 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 5.2e-179
Identity = 317/326 (97.24%), Postives = 321/326 (98.47%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFAMYRRR SHSRSRSRSPYRHRSYEERSYG+HGHSRRYDERDAYHE+RSRR RTTS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSP REGSEERRAKIEQWN+EREQGNDNNA SDDNRN+HEKSYDS
Sbjct: 241 PGHRSRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQGNDNNAKSDDNRNSHEKSYDS 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           EVKYANQTCGYEEQQQRQPPEQGYGY
Sbjct: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 326

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL
Match: A0A5D3CV58 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00620 PE=4 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 5.2e-179
Identity = 317/326 (97.24%), Postives = 321/326 (98.47%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFAMYRRR SHSRSRSRSPYRHRSYEERSYG+HGHSRRYDERDAYHE+RSRR RTTS
Sbjct: 181 RHELFAMYRRRRSHSRSRSRSPYRHRSYEERSYGRHGHSRRYDERDAYHENRSRRRRTTS 240

Query: 241 PGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDS 300
           PGHRSRSRSPRGRKNRSP REGSEERRAKIEQWN+EREQGNDNNA SDDNRN+HEKSYDS
Sbjct: 241 PGHRSRSRSPRGRKNRSPAREGSEERRAKIEQWNREREQGNDNNAKSDDNRNSHEKSYDS 300

Query: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 327
           EVKYANQTCGYEEQQQRQPPEQGYGY
Sbjct: 301 EVKYANQTCGYEEQQQRQPPEQGYGY 326

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL
Match: A0A6J1I2J7 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111469321 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 4.3e-165
Identity = 297/329 (90.27%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFA Y RR  HSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFASYHRRRGHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYD 300
           PGHR SRSRSPRGRKNRSPVRE SEERRAKIEQWN+E+EQ N NNANSD N ++HEKSY+
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREESEERRAKIEQWNREKEQENYNNANSDGNEHSHEKSYN 300

Query: 301 SEVKYANQTCGY--EEQQQRQPPEQGYGY 327
            +V+Y NQTCGY  ++QQQ+QPPEQGYGY
Sbjct: 301 GDVQYENQTCGYKQQQQQQQQPPEQGYGY 329

[Close]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL
Match: A0A6J1HM65 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111464850 PE=4 SV=1)

HSP 1 Score: 589.0 bits (1517), Expect = 1.3e-164
Identity = 298/330 (90.30%), Postives = 314/330 (95.15%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTS 240
           RHELFA Y RR SHSRSRSRSPYRHRSYEER YG+HGHSRRYDERDAYH+SR+RRHR+TS
Sbjct: 181 RHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTS 240

Query: 241 PGHR-SRSRSPRGRKNRSPVREGSEERRAKIEQWNKERE-QGNDNNANSDDNRNNHEKSY 300
           PGHR SRSRSPRGRKNRSPVREGSEERRAKIEQWN+E+E Q N NN+NSD + N+HEKSY
Sbjct: 241 PGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQKNYNNSNSDGHENSHEKSY 300

Query: 301 DSEVKYANQTCGYEEQQQRQ--PPEQGYGY 327
           + +V+Y NQTCGY++QQQ+Q  PPEQGYGY
Sbjct: 301 NGDVQYENQTCGYKQQQQQQQKPPEQGYGY 330

[Close]

BLAST of CsaV3_1G014490 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-107
Identity = 205/293 (69.97%), Postives = 231/293 (78.84%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD QG P+DP  IQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFAMYR---RRHSHSRSRSRSPYRHRSY-EERSYG------KHGHSRRYDERDAYHE 240
           R +LF  YR   RR S SRSRS SP R R +  ER  G      +HG+ +R  +R   H+
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 ---SRSRRHRTTSPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQG 281
                 RRH     G   RSRSPR       VREGSEERRA+IEQWN+ER++G
Sbjct: 241 RDGGGRRRH-----GSPKRSRSPRN------VREGSEERRARIEQWNRERDEG 282

[Close]

BLAST of CsaV3_1G014490 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-107
Identity = 205/293 (69.97%), Postives = 231/293 (78.84%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD QG P+DP  IQDHFE+FYED+F+ELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFAMYR---RRHSHSRSRSRSPYRHRSY-EERSYG------KHGHSRRYDERDAYHE 240
           R +LF  YR   RR S SRSRS SP R R +  ER  G      +HG+ +R  +R   H+
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 ---SRSRRHRTTSPGHRSRSRSPRGRKNRSPVREGSEERRAKIEQWNKEREQG 281
                 RRH     G   RSRSPR       VREGSEERRA+IEQWN+ER++G
Sbjct: 241 RDGGGRRRH-----GSPKRSRSPRN------VREGSEERRARIEQWNRERDEG 282

[Close]

BLAST of CsaV3_1G014490 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 378.6 bits (971), Expect = 4.9e-105
Identity = 198/298 (66.44%), Postives = 227/298 (76.17%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDAQG P+DPR IQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K + REL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFAMYRRRH-----SHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRR 240
           R +LF  YRR +     S SRSRS SP   R  + R       S R  +R+ Y     + 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGK- 240

Query: 241 HRTTSPGHRSRSRSPRGRKNRSPV--------REGSEERRAKIEQWNKEREQGNDNNA 286
            R++    R      RGR+  SP         REGSEERRA+IEQWN+ERE+  +  A
Sbjct: 241 -RSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA 296

[Close]

BLAST of CsaV3_1G014490 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 275.0 bits (702), Expect = 7.7e-74
Identity = 151/248 (60.89%), Postives = 178/248 (71.77%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVG 110
           MYQRPDMITPGVDAQG P+DPR IQ+HFE+F+EDLF+EL K+GEIESLN+CDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNF 170
           NVYVQF+EE+QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKRIGRELRHELFAMYRRRH-----SHSRSRSRSPYRHRSYEERSYGKHGHSRRYDER 230
           MH+K + RELR +LF  YRR +     S SRSRS SP   R  + R       S R  +R
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 DAYHESRSRRHRTTSPGHRSRSRSPRGRKNRSPV--------REGSEERRAKIEQWNKER 286
           + Y     +  R++    R      RGR+  SP         REGSEERRA+IEQWN+ER
Sbjct: 181 EFYRHGSGK--RSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNRER 240

[Close]

BLAST of CsaV3_1G014490 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 108.6 bits (270), Expect = 9.5e-24
Identity = 98/323 (30.34%), Postives = 154/323 (47.68%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRN 128
                 +  +EEFYED+  E  KYGE+ +  VC N + H+ GNVYV +R  E A  A ++
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---MCNRGGYCNFMH-LKRIGRELRHEL 188
           ++GR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G +     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 FAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHESRSRRHRTTSPGHR 248
                 R    +  S   Y    + E       +    D     H   SRR R+    H 
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 SRSRSP--RGRKNRSPVREGSEERRAKIEQWNKEREQGNDNNANSDDNRNNHEKSYDSEV 308
           +   +P  R RK     ++ + E     ++  +  E  +D + +S     + E+    E 
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTRE-----DKLRRHAENCHDGD-DSPSRDGSLEREMYKER 536

Query: 309 KYANQTCGYEEQQQRQPPEQGYG 326
           +YA  T   + +     P    G
Sbjct: 537 RYAKDTLHRDSRWSEHSPGHRVG 551

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139466.1	5.0e-184	100.00	splicing factor U2af small subunit B [Cucumis sativus] >XP_011654262.1 splicing ...	[more]
XP_008461981.1	1.1e-178	97.24	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_00846198...	[more]
XP_038894442.1	4.9e-171	93.56	splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038894443.1 sp...	[more]
XP_023519661.1	3.1e-165	90.91	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02351...	[more]
XP_022970323.1	8.9e-165	90.27	splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 spl...	[more]

BLAST of CsaV3_1G014490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQW8	6.7e-107	69.73	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9FMY5	1.5e-106	69.97	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	7.0e-104	66.44	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	5.2e-99	63.49	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	1.3e-65	55.32	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of CsaV3_1G014490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVA4	2.4e-184	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1	[more]
A0A1S3CFU2	5.2e-179	97.24	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10350045...	[more]
A0A5D3CV58	5.2e-179	97.24	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1I2J7	4.3e-165	90.27	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HM65	1.3e-164	90.30	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CsaV3_1G014490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	1.1e-107	69.97	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	1.1e-107	69.97	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	4.9e-105	66.44	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	7.7e-74	60.89	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	9.5e-24	30.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 75..90 score: 50.57 coord: 37..57 score: 57.14 coord: 18..37 score: 85.68 coord: 165..177 score: 63.64 coord: 103..125 score: 65.42 coord: 130..154 score: 62.0
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..307
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 45..142 e-value: 4.5E-4 score: 29.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 6.5E-7 score: 29.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.809897
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 72..142 e-value: 2.9E-7 score: 40.1
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.21 score: 20.6 coord: 13..39 e-value: 0.0065 score: 25.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 14..37 e-value: 5.2E-7 score: 29.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 10.774557
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.112443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 9.3E-31 score: 108.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..301
None	No IPR available	PANTHER	PTHR12620:SF39	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..307
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 4.22255E-64 score: 196.046
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014490.1	CsaV3_1G014490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding