CsaV3_1G014270 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G014270
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	histone H2B-like
Location	chr1: 9706233 .. 9707512 (+)
RNA-Seq Expression	CsaV3_1G014270
Synteny	CsaV3_1G014270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGTGTCATCCACGTGTCTTCTCCCCCGATTCGTGTAATTTTCTCTTAACAATATAGGTTTTATAATTAAATGAGCATTTAAATTAAAATCACCCGCCTATTCTTTCAAACCGGGCGTACTAAAAACGACGTGTCGTCATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGTTAGAGACTTAAGAGTATTGATATAATTTAACATGGTATTATTATAATTAAATCAATTTTTGACAATGAATTTGTTAAGTGACATCAATTTGAACTCTTTTAACTTTCGGCCCACTAATTTTCTAACAAACAACAATTTTTCACTCATTGATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATACCATCATGTCCAAATATATAGAACGACGAATTTGCAGATATAATTGTGTTTGAGTTGAATGAATAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTACATACATACATACATATATATATATATATATATATATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAATTAGTTACCTTTATAATCAC

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP*

Homology

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BLAST of CsaV3_1G014270 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 3.1e-122
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

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BLAST of CsaV3_1G014270 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106
Identity = 220/242 (90.91%), Postives = 229/242 (94.63%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+++KGKKG  RRKKK
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKG-GRRKKK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           KEKKREIKEGKRRSK S  G GREGYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 KEKKREIKEGKRRSKNS-SGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 240

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BLAST of CsaV3_1G014270 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 4.1e-90
Identity = 189/242 (78.10%), Postives = 213/242 (88.02%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDG-GGEMFRRTVP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+  +T +G GG++FRRT+P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60

Query: 61  VEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKK 120
           VEE     +QP + PVSEDF+ R+ TDSTSQLTEDTA TPE+EP++R GKKGR+R+KK +
Sbjct: 61  VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRNGKKGRKRKKKME 120

Query: 121 EKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180
                 KEGKRR K SGGGGGREGYKRYVFKVLKQVHPE+GISG+AM+ILNNFMNDMFQR
Sbjct: 121 ------KEGKRRRKSSGGGGGREGYKRYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQR 180

Query: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSK 240
           LA+EATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVS YVSY +  TK+ 
Sbjct: 181 LADEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSAYVSYVH--TKTX 234

Query: 241 LP 242
           LP
Sbjct: 241 LP 234

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BLAST of CsaV3_1G014270 vs. NCBI nr
Match: KAA0052101.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 2.2e-88
Identity = 187/242 (77.27%), Postives = 194/242 (80.17%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP               
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP--------------- 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
                                     +RYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 --------------------------ERYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 201

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BLAST of CsaV3_1G014270 vs. NCBI nr
Match: TYJ98095.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 182/242 (75.21%), Postives = 189/242 (78.10%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP               
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP--------------- 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
                                          +VLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 -------------------------------EVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 196

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BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 100/251 (39.84%), Postives = 147/251 (58.57%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEK-ESQDLTQEPDMAETPDGGGEMFRRTVP 60
           M PR+ + V    V    +VVEET++V V E+ +   +T+  +  ET D        ++P
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQD-----LTFSIP 60

Query: 61  VEEIKAHPQQPI------SHPVSEDFELRRA----TDSTSQLTEDTAVTPEMEPKIR--- 120
           V E     + P+      S PV E+    +      D +S    +T V    EP  +   
Sbjct: 61  VGENVTTVEIPVEVPDERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 120

Query: 121 ---KGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISG 180
                 +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP++GI+ 
Sbjct: 121 TPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHPDLGITS 180

Query: 181 QAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTK 235
           +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA+AEG+K
Sbjct: 181 KAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSK 240

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BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot
Match: P16867 (Histone H2B.3 OS=Volvox carteri OX=3067 PE=3 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 89  SQLTEDTAVTPEMEPKIRKGKKGRRR----RKKKKEKKREIKEGKRRSKKSGGGGGREGY 148
           SQ  E   V  E +PK  K  K + +    +K  KE     ++G ++SKK       E Y
Sbjct: 11  SQAAEAPEVKAEAKPKAVKAPKKKEKKAPAKKVAKEPSAGGEDGDKKSKKKAKVAKSETY 70

Query: 149 KRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGA 208
           K Y++KVLKQVHP+ GIS +AM I+N+F+ND+F+++A EA+KLS+Y    T++SREIQ A
Sbjct: 71  KLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTA 130

Query: 209 VRLVLPGELGKHAIAEGTKAVSNYVS 231
           VRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 131 VRLVLPGELAKHAVSEGTKAVTKFTS 156

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BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot
Match: Q9LGH4 (Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRS---KKSGGGGGR---EGYKRYVFKVLK 159
           E EP   K +K    +K K EK+    +G++ S   KK+G   G+   E YK Y+FKVLK
Sbjct: 16  EEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLK 75

Query: 160 QVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGEL 219
           QVHP++GIS +AM I+N+F+ND+F++LA EA KL++Y    T++SREIQ AVRLVLPGEL
Sbjct: 76  QVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGEL 135

Query: 220 GKHAIAEGTKAVSNYVS 231
            KHA++EGTKAV+ + S
Sbjct: 136 AKHAVSEGTKAVTKFTS 152

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BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot
Match: P49120 (Histone H2B.4 OS=Zea mays OX=4577 PE=3 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-25
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEV 159
           E +P   K +K  R  K+   K+   K+GK+++KKS      E YK Y+FKVLKQVHP++
Sbjct: 11  EKKPTEEKAEKKPRAEKRVPGKEGGEKKGKKKAKKS-----VETYKIYIFKVLKQVHPDI 70

Query: 160 GISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 219
           GIS +AM I+N+F+ND+F++LA EA KL++Y    T++SREIQ +VRLVLPGEL KHA++
Sbjct: 71  GISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVS 130

Query: 220 EGTKAVSNYVS 231
           EGTKAV+ + S
Sbjct: 131 EGTKAVTKFTS 136

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BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot
Match: P54347 (Histone H2B.4 OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-25
Identity = 68/144 (47.22%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 87  STSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKR 146
           +T++   +     E +PK  K  K  ++   KK  K    +G+++ KK       E YK 
Sbjct: 10  ATAEAGAEAPAKAEAKPKAEKAAKKAKKEPSKKAAKEPKGDGEKKDKKK-KKSAVETYKL 69

Query: 147 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 206
           Y++KVLKQVHP+ GIS +AM I+N+F+ND+F+++A EA+KLS+Y    T++SREIQ AVR
Sbjct: 70  YIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVR 129

Query: 207 LVLPGELGKHAIAEGTKAVSNYVS 231
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 130 LVLPGELAKHAVSEGTKAVTKFTS 152

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BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

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BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 220/242 (90.91%), Postives = 229/242 (94.63%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+++KGKKG  RRKKK
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKG-GRRKKK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           KEKKREIKEGKRRSK S  G GREGYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 KEKKREIKEGKRRSKNS-SGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 240

[Close]

BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 187/242 (77.27%), Postives = 194/242 (80.17%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP               
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP--------------- 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
                                     +RYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 --------------------------ERYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 201

[Close]

BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL
Match: A0A5D3BHX3 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00310 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.6e-85
Identity = 182/242 (75.21%), Postives = 189/242 (78.10%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP               
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP--------------- 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
                                          +VLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 -------------------------------EVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 196

[Close]

BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 9.2e-72
Identity = 167/237 (70.46%), Postives = 190/237 (80.17%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R G +   R+K +K+
Sbjct: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVR-ESRKKNEKK 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           K+RE+K  KRRS     GGGREGYKRYVFKVLKQVHPEVGISGQAM+ILNN MNDMF+RL
Sbjct: 121 KEREVK--KRRS-----GGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 238
           AEEATKLSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 AEEATKLSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 220

[Close]

BLAST of CsaV3_1G014270 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 100/251 (39.84%), Postives = 147/251 (58.57%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEK-ESQDLTQEPDMAETPDGGGEMFRRTVP 60
           M PR+ + V    V    +VVEET++V V E+ +   +T+  +  ET D        ++P
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQD-----LTFSIP 60

Query: 61  VEEIKAHPQQPI------SHPVSEDFELRRA----TDSTSQLTEDTAVTPEMEPKIR--- 120
           V E     + P+      S PV E+    +      D +S    +T V    EP  +   
Sbjct: 61  VGENVTTVEIPVEVPDERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 120

Query: 121 ---KGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISG 180
                 +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP++GI+ 
Sbjct: 121 TPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHPDLGITS 180

Query: 181 QAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTK 235
           +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA+AEG+K
Sbjct: 181 KAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSK 240

[Close]

BLAST of CsaV3_1G014270 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-26
Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEV 159
           E +P  +K  +     K  K +K+  KEG    KK       E YK Y+FKVLKQVHP++
Sbjct: 7   EKKPAGKKPAEKAPAEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDI 66

Query: 160 GISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 219
           GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRLVLPGEL KHA++
Sbjct: 67  GISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVS 126

Query: 220 EGTKAVSNYVS 231
           EGTKAV+ + S
Sbjct: 127 EGTKAVTKFTS 137

[Close]

BLAST of CsaV3_1G014270 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-26
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 98  TPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 157
           TP  EP     KK +  +K  KE      + K+RSKK+      E YK Y+FKVLKQVHP
Sbjct: 17  TPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKN-----VETYKIYIFKVLKQVHP 76

Query: 158 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 217
           ++GIS +AM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVRLVLPGEL KHA
Sbjct: 77  DIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHA 136

Query: 218 IAEGTKAVSNYVS 231
           ++EGTKAV+ + S
Sbjct: 137 VSEGTKAVTKFTS 144

[Close]

BLAST of CsaV3_1G014270 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-26
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 97  VTPEMEPKIRKGKKGRRR---RKKKKEK---KREIKEGKRRSKKSGGGGGR--------- 156
           + P+ E K  + K    +    K K EK   +++ K GK+  K++G GG +         
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 157 EGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREI 216
           E YK Y+FKVLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 217 QGAVRLVLPGELGKHAIAEGTKAVSNYVS 231
           Q AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CsaV3_1G014270 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 7.5e-26
Identity = 72/144 (50.00%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 101 MEPKIRK--GKKGRRRRKKKKEK---KREIKEGKRRSKKSGGGGGR---------EGYKR 160
           M PK  K   +K     K K EK   +++ K GK+  K++G GG +         E YK 
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 161 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 220
           Y+FKVLKQVHP++GIS +AM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 221 LVLPGELGKHAIAEGTKAVSNYVS 231
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTS 144

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736247.1	3.1e-122	100.00	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]
XP_008462313.1	3.1e-106	90.91	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_038894659.1	4.1e-90	78.10	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]
KAA0052101.1	2.2e-88	77.27	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]
TYJ98095.1	1.1e-84	75.21	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G014270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	2.1e-28	39.84	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
P16867	1.3e-25	49.32	Histone H2B.3 OS=Volvox carteri OX=3067 PE=3 SV=3	[more]
Q9LGH4	1.3e-25	52.55	Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1	[more]
P49120	2.1e-25	52.67	Histone H2B.4 OS=Zea mays OX=4577 PE=3 SV=3	[more]
P54347	3.7e-25	47.22	Histone H2B.4 OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=3	[more]

BLAST of CsaV3_1G014270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSH9	1.5e-122	100.00	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A1S3CH74	1.5e-106	90.91	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A5A7UF12	1.1e-88	77.27	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BHX3	5.6e-85	75.21	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1FBI7	9.2e-72	70.46	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]

BLAST of CsaV3_1G014270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	1.5e-29	39.84	Histone superfamily protein	[more]
AT3G53650.1	4.4e-26	51.15	Histone superfamily protein	[more]
AT5G22880.1	5.8e-26	52.63	histone B2	[more]
AT5G59910.1	5.8e-26	48.32	Histone superfamily protein	[more]
AT3G46030.1	7.5e-26	50.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 185..202 score: 46.4 coord: 144..162 score: 69.17 coord: 163..183 score: 50.75 coord: 202..215 score: 78.23 coord: 215..228 score: 69.32
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 129..230 e-value: 7.6E-46 score: 168.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..232
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 84..207 e-value: 6.6E-18 score: 65.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 97..231 e-value: 4.9E-48 score: 164.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 115..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..129
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 1..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014270.1	CsaV3_1G014270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity