CsaV3_1G010940 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G010940
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 6780655 .. 6781096 (-)
RNA-Seq Expression	CsaV3_1G010940
Synteny	CsaV3_1G010940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAGTATCTATAGAAACAAAAATTTTGAGTTAACTATATCCATCCAATGGTCCAATTCAAAACCAGAGCTTCTCTTTGTGCGGCCATGGTTGAATTGAAGCTTCTCCCGATAGTATATAATGCGGTGCTTGCTCAGAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

mRNA sequence

ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

Coding sequence (CDS)

ATGCTTCGAGGAACACCACTCATAGAATATACTTTTGAATTCATAGATATAACATCAAATTTGATTACATTCACAGAGGCACAGAAGAAGGAGCATACGTGGGAGGGAACATTCCCTAAGTCTTTGCTGGACAAATTTGAATGGGCGAATGGATATACAAACAGAAAGGTTTGGGCTTTACCTGAAGATTATCATCGCACTCTGAAGAGAACTCCAAAGCTTTCTTTTCCGAACTTTGATGGGTCACAATGTCATCGCAGTTGCGTCAAGGAAAGTGATCTAACCAAGCAGCACCCCAGTGTTATATGA

Protein sequence

MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWALPEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI*

Homology

[Close]

BLAST of CsaV3_1G010940 vs. NCBI nr
Match: KGN64540.1 (hypothetical protein Csa_014011 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60
           MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL
Sbjct: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60

Query: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 103
           PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI
Sbjct: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 102

[Close]

BLAST of CsaV3_1G010940 vs. ExPASy Swiss-Prot
Match: Q7XPY7 (Probable inactive beta-glucosidase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU14 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05
Identity = 35/84 (41.67%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 17  ITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWALPEDYHRTLKRTPKLSF 76
           I   LI+   A +K     G F  SLLD FEW  GYT R  + L   +++TLKRTPKLS 
Sbjct: 431 IQGYLISLASAIRKGADVRGYFVWSLLDDFEWNFGYTLR--FGLYHVHYKTLKRTPKLSV 490

Query: 77  PNF----DGSQCHRSCVKESDLTK 97
             +     GS   R    ES L K
Sbjct: 491 DWYRKFLTGSLLRRKFRDESQLHK 512

[Close]

BLAST of CsaV3_1G010940 vs. ExPASy TrEMBL
Match: A0A0A0LRM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063640 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.7e-55
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60
           MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL
Sbjct: 1   MLRGTPLIEYTFEFIDITSNLITFTEAQKKEHTWEGTFPKSLLDKFEWANGYTNRKVWAL 60

Query: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 103
           PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI
Sbjct: 61  PEDYHRTLKRTPKLSFPNFDGSQCHRSCVKESDLTKQHPSVI 102

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64540.1	2.0e-54	100.00	hypothetical protein Csa_014011 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XPY7	6.8e-05	41.67	Probable inactive beta-glucosidase 14 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CsaV3_1G010940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRM1	9.7e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063640 PE=4 SV=1	[more]

BLAST of CsaV3_1G010940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 13..81 e-value: 2.0E-6 score: 28.5
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 20..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010940.1	CsaV3_1G010940.1	mRNA