CsaV3_1G009870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G009870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 6147825 .. 6148040 (+)
RNA-Seq Expression	CsaV3_1G009870
Synteny	CsaV3_1G009870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

mRNA sequence

ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

Coding sequence (CDS)

ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

Protein sequence

MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFLLPCRLSILSLA*

Homology

[Close]

BLAST of CsaV3_1G009870 vs. NCBI nr
Match: KGN64436.1 (hypothetical protein Csa_013844 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60
          MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL
Sbjct: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60

Query: 61 LPCRLSILSLA 72
          LPCRLSILSLA
Sbjct: 61 LPCRLSILSLA 71

[Close]

BLAST of CsaV3_1G009870 vs. ExPASy TrEMBL
Match: A0A0A0LWS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051735 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.4e-37
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60
          MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL
Sbjct: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60

Query: 61 LPCRLSILSLA 72
          LPCRLSILSLA
Sbjct: 61 LPCRLSILSLA 71

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009870 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64436.1	1.3e-36	100.00	hypothetical protein Csa_013844 [Cucumis sativus]	[more]

BLAST of CsaV3_1G009870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G009870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWS2	6.4e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051735 PE=4 SV=1	[more]

BLAST of CsaV3_1G009870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G009870.1	CsaV3_1G009870.1	mRNA