CsaV3_1G009730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009730
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
Locationchr1: 6016414 .. 6018992 (-)
RNA-Seq ExpressionCsaV3_1G009730
SyntenyCsaV3_1G009730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGTATTAAAATTCACATGTCTTAATGATATTGTTCACATACAAAAGAATATATTAAGAAACCTATCATTTCTAACAAAGATATGTCGAACTAAATGGGCTTAAAATTGGGCCTTAAAAAAAATACAAAAGCGTCGACAGCAGGGTTCGAACCTGCGCGGGCGAAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGACTTTTTTGCTTAGAAATCCAATTTTACAAGAATCATAATATAAAATGTTTGATCTTCATTACTTGGATAAGCAACACGATTGAAAACAGAACCAAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCGACTGCTACTCTTCAGTTTTGTTACTTGTTTATTTGTAGTTTCTATCTGCCCTAAATTTGCATTGGTTTTTCTCAAGTATTTCATTGACAATGTGGCTAACTGCATCTTCGGTTTTCCCTCAATTTTGTCCTCTTTGATGTTCCAGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCCTGATTTAATGTTCTTCATCAAAATTAGGTTCTCTTGGTCGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTACGCTAGCAGATTTAATCTTTGCATTTCAGATTGATATACATATGTTGATTAGAATGCTGAGATAGAGATGAGAATGGGTTCTATTTACTATAGTGACCGTTGGCTTATTCTCTTGAATTCAGTAGTGCTTTAACATAGATAAGGAAGTAAATCCTTGGCTGCGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGTGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATCCACGGACCTTCTACACTTTAACTTTAACAATGATCATAAGTTAGAGCATCTATCCAGCACAAAATTGAAGGATAAACAGTTTGTTTTTATTTTTTTTAACAAAGTGTCTGCATTAGACATGTGTCGTACATGGATATGTCTGGACACGCTTTAGACACATGTCCGACATGCTAAAAGAAGTGTCAGGAATTTTTTCTTCTAATTTTGGACAAGACTTTGACATGGTTATGGCTTTAGAAAATATTAACTCACAAAATAGGGAGAAAATTTGAGATTCTCTTTTAGTTTGAATCCTTATATATTGATCAATCCTAAAGTAATAGAATGATATCCTCCTCCTCTAGTTATAGCCAACTAAATCTCTTTATATCTTAAGGTTTCATACATCGTTAATCAACTTTACTTGTGTTTGTTTCTAGTGAAGTATATTTTGCATGGATTTTAATTTACATGTATTTATCTATAATGAAGTTAATATATCTAACATACACACATTTCATATTTAAAAGAATTGTATCCCAAATGTATCCATGTCCAATTATTTCAGAAATGGACGTGTTGCCATATCCATGTTGTGTCATGTGTGCGTTTGTGCTTCTTAGTTCGTAAACTTATTCGATGCAAAATCAAAAGTTCAAGTTAGACACTTATTAATTTTACATGCCAATTAAGTATACTTGAAAAGTTTATGACAGTCTACATTTTTGGATCTCACATAAAAATTTCGAGCCTTACACTTAAAAGAAGAGTAAGCTTATGGCTTATAAAACAAGATGCATTCATGATTATGACAGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAACCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCATTTATTTTAGCCACATATAAAAGAATGTTCAACTTCATTATCATCTATAATTATTCATCTTGTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACCTATGTTTAGCTCTAGTTATTGAA

mRNA sequence

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Protein sequence

MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD*
Homology
BLAST of CsaV3_1G009730 vs. NCBI nr
Match: XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 3.1e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of CsaV3_1G009730 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.0 bits (1151), Expect = 5.1e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CsaV3_1G009730 vs. NCBI nr
Match: XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 434.1 bits (1115), Expect = 7.6e-118
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKK    KNQYHSP S PSM+ LQN+NHKPIFLSH+LSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKK--KKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230

BLAST of CsaV3_1G009730 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.0 bits (990), Expect = 2.4e-103
Identity = 196/236 (83.05%), Postives = 213/236 (90.25%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKKK NN  NQ+ S V    S PSM+ L N+NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKKKSNN--NQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CsaV3_1G009730 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.0 bits (985), Expect = 9.0e-103
Identity = 195/236 (82.63%), Postives = 212/236 (89.83%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKKK NN  NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKKKKNN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAFPL+IP++++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CsaV3_1G009730 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-64
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0

Query: 47  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 227 TFDSMD 232
           TF+SM+
Sbjct: 223 TFESME 225

BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match: A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.5e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match: A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match: A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.7e-103
Identity = 195/236 (82.63%), Postives = 211/236 (89.41%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKK  NNN NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKK--NNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+ P GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 194/236 (82.20%), Postives = 210/236 (88.98%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKKK  N  NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKKKKKN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAF L+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CsaV3_1G009730 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-65
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0

Query: 47  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 227 TFDSMD 232
           TF+SM+
Sbjct: 223 TFESME 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004154123.13.1e-127100.00thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... [more]
XP_008439847.15.1e-12296.14PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... [more]
XP_038893869.17.6e-11893.53thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida][more]
XP_023542750.12.4e-10383.05thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... [more]
KAG7012320.19.0e-10382.63Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
Match NameE-valueIdentityDescription
Q9SW332.3e-6467.74Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
A0A0A0LRK91.5e-127100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1[more]
A0A5A7UK022.5e-12296.14Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3AZP32.5e-12296.14thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1K5815.7e-10382.63thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... [more]
A0A6J1GT708.2e-10282.20thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
AT4G24930.11.6e-6567.74thylakoid lumenal 17.9 kDa protein, chloroplast [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTICcoord: 17..231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009730.1CsaV3_1G009730.1mRNA