Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGTATTAAAATTCACATGTCTTAATGATATTGTTCACATACAAAAGAATATATTAAGAAACCTATCATTTCTAACAAAGATATGTCGAACTAAATGGGCTTAAAATTGGGCCTTAAAAAAAATACAAAAGCGTCGACAGCAGGGTTCGAACCTGCGCGGGCGAAGCCCAACAGATTTCAAGTCTGTCTCCTTAACCACTCGGACATATCGACTTTTTTGCTTAGAAATCCAATTTTACAAGAATCATAATATAAAATGTTTGATCTTCATTACTTGGATAAGCAACACGATTGAAAACAGAACCAAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCGACTGCTACTCTTCAGTTTTGTTACTTGTTTATTTGTAGTTTCTATCTGCCCTAAATTTGCATTGGTTTTTCTCAAGTATTTCATTGACAATGTGGCTAACTGCATCTTCGGTTTTCCCTCAATTTTGTCCTCTTTGATGTTCCAGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCCTGATTTAATGTTCTTCATCAAAATTAGGTTCTCTTGGTCGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTACGCTAGCAGATTTAATCTTTGCATTTCAGATTGATATACATATGTTGATTAGAATGCTGAGATAGAGATGAGAATGGGTTCTATTTACTATAGTGACCGTTGGCTTATTCTCTTGAATTCAGTAGTGCTTTAACATAGATAAGGAAGTAAATCCTTGGCTGCGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGTGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATCCACGGACCTTCTACACTTTAACTTTAACAATGATCATAAGTTAGAGCATCTATCCAGCACAAAATTGAAGGATAAACAGTTTGTTTTTATTTTTTTTAACAAAGTGTCTGCATTAGACATGTGTCGTACATGGATATGTCTGGACACGCTTTAGACACATGTCCGACATGCTAAAAGAAGTGTCAGGAATTTTTTCTTCTAATTTTGGACAAGACTTTGACATGGTTATGGCTTTAGAAAATATTAACTCACAAAATAGGGAGAAAATTTGAGATTCTCTTTTAGTTTGAATCCTTATATATTGATCAATCCTAAAGTAATAGAATGATATCCTCCTCCTCTAGTTATAGCCAACTAAATCTCTTTATATCTTAAGGTTTCATACATCGTTAATCAACTTTACTTGTGTTTGTTTCTAGTGAAGTATATTTTGCATGGATTTTAATTTACATGTATTTATCTATAATGAAGTTAATATATCTAACATACACACATTTCATATTTAAAAGAATTGTATCCCAAATGTATCCATGTCCAATTATTTCAGAAATGGACGTGTTGCCATATCCATGTTGTGTCATGTGTGCGTTTGTGCTTCTTAGTTCGTAAACTTATTCGATGCAAAATCAAAAGTTCAAGTTAGACACTTATTAATTTTACATGCCAATTAAGTATACTTGAAAAGTTTATGACAGTCTACATTTTTGGATCTCACATAAAAATTTCGAGCCTTACACTTAAAAGAAGAGTAAGCTTATGGCTTATAAAACAAGATGCATTCATGATTATGACAGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAACCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCATTTATTTTAGCCACATATAAAAGAATGTTCAACTTCATTATCATCTATAATTATTCATCTTGTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACCTATGTTTAGCTCTAGTTATTGAA
mRNA sequence
ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA
Coding sequence (CDS)
ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA
Protein sequence
MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD*
Homology
BLAST of CsaV3_1G009730 vs. NCBI nr
Match:
XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])
HSP 1 Score: 465.3 bits (1196), Expect = 3.1e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of CsaV3_1G009730 vs. NCBI nr
Match:
XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 448.0 bits (1151), Expect = 5.1e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
+GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of CsaV3_1G009730 vs. NCBI nr
Match:
XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])
HSP 1 Score: 434.1 bits (1115), Expect = 7.6e-118
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
MSSLQFRPPLVSPWKKK KNQYHSP S PSM+ LQN+NHKPIFLSH+LSFALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKK--KKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLS 60
Query: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61 SPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230
BLAST of CsaV3_1G009730 vs. NCBI nr
Match:
XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 386.0 bits (990), Expect = 2.4e-103
Identity = 196/236 (83.05%), Postives = 213/236 (90.25%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
MSSL FRP LVSPWKKK NN NQ+ S V S PSM+ L N+NHKPIF+SHLLSFALS
Sbjct: 1 MSSLHFRPALVSPWKKKSNN--NQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALS 60
Query: 61 ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61 ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKS 120
Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of CsaV3_1G009730 vs. NCBI nr
Match:
KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 384.0 bits (985), Expect = 9.0e-103
Identity = 195/236 (82.63%), Postives = 212/236 (89.83%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
MSSL FRP LVSPWKKK NN NQ+ S V S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1 MSSLHFRPALVSPWKKKKNN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60
Query: 61 ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61 ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120
Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
SSFAFPL+IP++++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of CsaV3_1G009730 vs. ExPASy Swiss-Prot
Match:
Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)
HSP 1 Score: 246.9 bits (629), Expect = 2.3e-64
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0
Query: 47 LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
L L+SFAL+I+L+S P++AIPSL+S S PL TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43 LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102
Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
P CVSTNP SSSF+FPL IP+ + +PI+KL+EAI+ TQ+NPK V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162
Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
+ G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222
Query: 227 TFDSMD 232
TF+SM+
Sbjct: 223 TFESME 225
BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match:
A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)
HSP 1 Score: 465.3 bits (1196), Expect = 1.5e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match:
A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)
HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
+GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match:
A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)
HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
+GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match:
A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)
HSP 1 Score: 383.6 bits (984), Expect = 5.7e-103
Identity = 195/236 (82.63%), Postives = 211/236 (89.41%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
MSSL FRP LVSPWKK NNN NQ+ S V S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1 MSSLHFRPALVSPWKK--NNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60
Query: 61 ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+ P GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61 ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKS 120
Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of CsaV3_1G009730 vs. ExPASy TrEMBL
Match:
A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 194/236 (82.20%), Postives = 210/236 (88.98%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
MSSL FRP LVSPWKKK N NQ+ S V S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1 MSSLHFRPALVSPWKKKKKN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60
Query: 61 ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61 ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120
Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
SSFAF L+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of CsaV3_1G009730 vs. TAIR 10
Match:
AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )
HSP 1 Score: 246.9 bits (629), Expect = 1.6e-65
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0
Query: 47 LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
L L+SFAL+I+L+S P++AIPSL+S S PL TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43 LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102
Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
P CVSTNP SSSF+FPL IP+ + +PI+KL+EAI+ TQ+NPK V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162
Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
+ G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222
Query: 227 TFDSMD 232
TF+SM+
Sbjct: 223 TFESME 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004154123.1 | 3.1e-127 | 100.00 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... | [more] |
XP_008439847.1 | 5.1e-122 | 96.14 | PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... | [more] |
XP_038893869.1 | 7.6e-118 | 93.53 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida] | [more] |
XP_023542750.1 | 2.4e-103 | 83.05 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... | [more] |
KAG7012320.1 | 9.0e-103 | 82.63 | Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
Match Name | E-value | Identity | Description | |
Q9SW33 | 2.3e-64 | 67.74 | Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LRK9 | 1.5e-127 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1 | [more] |
A0A5A7UK02 | 2.5e-122 | 96.14 | Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3AZP3 | 2.5e-122 | 96.14 | thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... | [more] |
A0A6J1K581 | 5.7e-103 | 82.63 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... | [more] |
A0A6J1GT70 | 8.2e-102 | 82.20 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... | [more] |
Match Name | E-value | Identity | Description | |
AT4G24930.1 | 1.6e-65 | 67.74 | thylakoid lumenal 17.9 kDa protein, chloroplast | [more] |