CsaV3_1G009160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009160
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 5716800 .. 5717074 (-)
RNA-Seq ExpressionCsaV3_1G009160
SyntenyCsaV3_1G009160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACAGTAAAGGTTTAGAAAGGCGGAAACTTTACGGCTTGAGCTTATCGCGCTAACGATTCCATATGTAGCCAAAGCTGAGCTAGTGAGCCCAATAGTAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

mRNA sequence

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Coding sequence (CDS)

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Protein sequence

MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDGG*
Homology
[Close]
BLAST of CsaV3_1G009160 vs. NCBI nr
Match: KGN64360.1 (hypothetical protein Csa_013460 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]
BLAST of CsaV3_1G009160 vs. ExPASy TrEMBL
Match: A0A0A0LR19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049990 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64360.15.3e-26100.00hypothetical protein Csa_013460 [Cucumis sativus][more]
BLAST of CsaV3_1G009160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR192.6e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G049990 PE=4 SV=1[more]
BLAST of CsaV3_1G009160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009160.1CsaV3_1G009160.1mRNA