CsaV3_1G008840 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G008840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	chr1: 5512412 .. 5513088 (-)
RNA-Seq Expression	CsaV3_1G008840
Synteny	CsaV3_1G008840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAACAACGGAGAATTGAATTGGTGATCATAAACGAATGATCTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTTAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGAAGAAACCCCCAAATTTGAGGTTGTCATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCCCACATACACACACACACGCGCACACATTATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

mRNA sequence

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Coding sequence (CDS)

ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGGAGATTCAATTATTAG

Protein sequence

MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLESGGGRSQRKRRESCNSLRNLFNRASSRRFNY*

Homology

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BLAST of CsaV3_1G008840 vs. NCBI nr
Match: KAE8652596.1 (hypothetical protein Csa_014373 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.6e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLESGGGRSQRKRRESCNSLRNLFNRASSRRF 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLESGGGRSQRKRRESCNSLRNLFNRASSRRF
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLESGGGRSQRKRRESCNSLRNLFNRASSRRF 120

Query: 121 NY 123
           NY
Sbjct: 121 NY 122

[Close]

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 122/136 (89.71%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

[Close]

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 uncharacterized protein E6C27_scaffold80G001040 [Cucumis melo var. makuwa] >TYJ99185.1 uncharacterized protein E5676_scaffold248G003950 [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 6.3e-55
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

[Close]

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-47
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKP+L Q  DD RHLEILKAVAQAWHSHTG+SKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPEL-QDDDDHRHLEILKAVAQAWHSHTGSSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES--------------GGGRSQRKRRESCN 120
           +R S+VSDRRWDF QSLWDSYEIVTVSKKLE+              GGGRSQRK+RESCN
Sbjct: 61  TR-SSVSDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGGGRSQRKKRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLF+RASSRRFNY
Sbjct: 121 SLRNLFSRASSRRFNY 134

[Close]

BLAST of CsaV3_1G008840 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 8.3e-39
Identity = 95/134 (70.90%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES-------------GGGRSQRKRRESCNS 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE+             GGGR+QRK+RESCNS
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNS 143

Query: 121 LRNLFNRASSRRFN 122
           LRNLFNR +SRRFN
Sbjct: 144 LRNLFNR-TSRRFN 153

[Close]

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 122/136 (89.71%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

[Close]

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

[Close]

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 123
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

[Close]

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.0e-39
Identity = 95/134 (70.90%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLES-------------GGGRSQRKRRESCNS 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE+             GGGR+QRK+RESCNS
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNS 143

Query: 121 LRNLFNRASSRRFN 122
           LRNLFNR +SRRFN
Sbjct: 144 LRNLFNR-TSRRFN 153

[Close]

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.8e-39
Identity = 91/125 (72.80%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 10  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDR 69
           + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    R
Sbjct: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66

Query: 70  RWDFAQSLWDSYEIVTVSKKLES-------------GGGRSQRKRRESCNSLRNLFNRAS 122
           RWDF QSLWDSYEIV VSKKLE+             GGGR+QRK+RESCNSLRNLFNR +
Sbjct: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRNLFNR-T 126

[Close]

BLAST of CsaV3_1G008840 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-16
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 1   MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPS 60
           M+KK +    ++++     + LE++KA AQAW SH+ TSK    EFDA R+++  +   S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLE--------------SGGGRSQ 120
           RFK EA+ ++    S   W+F QSLWD YEI++VSKKLE              + G +  
Sbjct: 61  RFKTEALSAKHHP-SFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKM 120

The following BLAST results are available for this feature:

BLAST of CsaV3_1G008840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652596.1	2.6e-61	100.00	hypothetical protein Csa_014373 [Cucumis sativus]	[more]
XP_011651756.1	2.1e-58	89.71	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
XP_008438871.1	6.3e-55	84.56	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 unc...	[more]
XP_038894267.1	6.3e-47	78.68	uncharacterized protein LOC120082919 [Benincasa hispida]	[more]
XP_022923731.1	8.3e-39	70.90	uncharacterized protein LOC111431350 [Cucurbita moschata]	[more]

BLAST of CsaV3_1G008840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G008840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM3	1.0e-58	89.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A5A7UNW1	3.0e-55	84.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	3.0e-55	84.56	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]
A0A6J1E7J5	4.0e-39	70.90	uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A6J1KNC1	6.8e-39	72.80	uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727...	[more]

BLAST of CsaV3_1G008840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	3.6e-16	40.97	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 9..121
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 9..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G008840.1	CsaV3_1G008840.1	mRNA