CsaV3_1G008190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G008190
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 5159894 .. 5161626 (+)
RNA-Seq ExpressionCsaV3_1G008190
SyntenyCsaV3_1G008190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAGTTACTCTCCTTGATCCCCTGGTTAAGAGGTAGAATGAAGGTGATATCTTGAAGTCTTCTATCATGGTCTGTTTGGTAACCATTAGTTTTTGGTTTTTGAAAATCAAGTCTATTTTTTTTTTTTCAATTTATTAGCATGGTTTGCAAATTTATCAAGCAAAAAAGTTGAATTTTTAGCCCAATTAAAAAGAAAGAAACAAAATTTTAAAGTTTAAAAAACTGACTTGGTTTCTGAAAGCATAGGTAATAAGTAGATTACAGAGCTAGTAATTTAGAGGTGAAATTAGTGTTTGTGGGCTTAATTTTCAAAAACTAAAAATAAAAACCAAATGGTTACAAAAAGGGCTCAACAATGCATTTCCTCTTTTAGAGATTTCAGGTGTAGAGTACAAAGCAGCAGATATAAGTGGTCACTGGAGTTCATTTGTTTCAAGTTGGCTTGCTAGTTACTAGCTCATATCAGGTCTATATCAGTTTTGATGTTAAAATATGCTTAATTTGATTAATTAACCATAAGTTATAATCATTTGACCTCAAAATATTTTCCTTGACAGATATCCATACTGATAATGTTGGAAACTTTCAGAAGCAGAACAGTCGAATGCCACAGTCTTCACATAAAACATGTAAGATTTCATGGACATATGCTAATGTTAATATAAAACACTTGTATATTAAGTTGGATTTTATAAGGTCCTGTTTGATCATTATTTTATTTGTGGTTTTCTGTTTTTGAAACGTAAGCTAAGAAACACCACTTCCACCCTTTTGTCTTTTTGCTTTTCTACTTATTCTTGATCTGGTTATACAATCTATGGACCAAATCTTGAATGAATCTTGATCAAGAAAGATCGTTTGTATTTTTACGAAATAGAATATAGAAATTGAAATATTTACCAGTAAATTTTTTTTGTGTTTTCAGCATCCACAGTGACTCTTGCCTATAAATAAAAAGACATACTTTGTCACATCTCCCATTTTTAGAAATTTGATGGCACTTTGAGAGCAGAGTTCTTATTGCCATCCGTAAGCTAAATGCCACCAAATTTATCCAGGAACACAACACCATTGACTTGACAAGGCTTGGTTGTATTCTGGTTTCGTAAGGGTTAAAAAAAAGTGTTTTCAAGCCCTTAGAAATTCAATTTAAACCACCCCAATTATAATAACTAAGGTTATTGCTCTGTTGATGGTTTGGAGTGGGAAATTAATGTATAGTTTTACTGATTCCGTTTGGGTTTATGGCTGTAATTAAGTCCTTTGATATTGTATTTATTAGAAATCTAAAGCTGTCTGGTTTCTAATTTGATCTTTAGACTGAATAACTATGATGAGCGGCAAAGCATTTCGAAGATTCAAACTATGATCTACACGTTAGAGTCTTAGTGTAATAGTTATCCAGTTTTATCCTTTTCTTGCAATGCTGAGTTAGGGGTATCTTAGTGTTTTTTGCTTTGATTGATGGTGTGTTATTTAAAGCTTCTTGAACCTTTTGCAATTCATATCTGGTAAGATCATTCTATCTTACAAGTTACAACTTGTAGGTTGATAAATTCTAGTCTTGGAAGTTTTGATCTTAAAGCAATTCGCATCTCAGCTAAATCTTACCAAATAGGTTTGGAAATTTTAATGTATCCAAATGGTTTCTGCTCGAATTTCATTAAGGTTCTAGATCTTAACAATTTTTAAGGGAGATTTTCTTCTATCATGCAGGAGGTTTGTTGA

mRNA sequence

ATGGGCAAGTTACTCTCCTTGATCCCCTGGTTAAGAGGTAGAATGAAGATATCCATACTGATAATGTTGGAAACTTTCAGAAGCAGAACAGTCGAATGCCACAGTCTTCACATAAAACATGAACACAACACCATTGACTTGACAAGGCTTGGTTGTATTCTGGTTTCGTTGATAAATTCTAGTCTTGGAAGTTTTGATCTTAAAGCAATTCGCATCTCAGCTAAATCTTACCAAATAGGGAGATTTTCTTCTATCATGCAGGAGGTTTGTTGA

Coding sequence (CDS)

ATGGGCAAGTTACTCTCCTTGATCCCCTGGTTAAGAGGTAGAATGAAGATATCCATACTGATAATGTTGGAAACTTTCAGAAGCAGAACAGTCGAATGCCACAGTCTTCACATAAAACATGAACACAACACCATTGACTTGACAAGGCTTGGTTGTATTCTGGTTTCGTTGATAAATTCTAGTCTTGGAAGTTTTGATCTTAAAGCAATTCGCATCTCAGCTAAATCTTACCAAATAGGGAGATTTTCTTCTATCATGCAGGAGGTTTGTTGA

Protein sequence

MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINSSLGSFDLKAIRISAKSYQIGRFSSIMQEVC*
Homology
[Close]
BLAST of CsaV3_1G008190 vs. NCBI nr
Match: KGN64283.1 (hypothetical protein Csa_013409 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 8.5e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS 60
          MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS
Sbjct: 1  MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS 60

Query: 61 SLGSFDLKAIRISAKSYQIGRFSSIMQEVC 91
          SLGSFDLKAIRISAKSYQIGRFSSIMQEVC
Sbjct: 61 SLGSFDLKAIRISAKSYQIGRFSSIMQEVC 90

[Close]
BLAST of CsaV3_1G008190 vs. ExPASy TrEMBL
Match: A0A0A0LR60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045810 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS 60
          MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS
Sbjct: 1  MGKLLSLIPWLRGRMKISILIMLETFRSRTVECHSLHIKHEHNTIDLTRLGCILVSLINS 60

Query: 61 SLGSFDLKAIRISAKSYQIGRFSSIMQEVC 91
          SLGSFDLKAIRISAKSYQIGRFSSIMQEVC
Sbjct: 61 SLGSFDLKAIRISAKSYQIGRFSSIMQEVC 90

The following BLAST results are available for this feature:
BLAST of CsaV3_1G008190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64283.18.5e-41100.00hypothetical protein Csa_013409 [Cucumis sativus][more]
BLAST of CsaV3_1G008190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G008190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR604.1e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045810 PE=4 SV=1[more]
BLAST of CsaV3_1G008190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G008190.1CsaV3_1G008190.1mRNA