CsaV3_1G007790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G007790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RPA-interacting protein
Location	chr1: 4936022 .. 4938444 (+)
RNA-Seq Expression	CsaV3_1G007790
Synteny	CsaV3_1G007790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGCCCCAGACTACATTCTTGAACAAAATGTCACCCCGTCGACATGTAAACGACCATTCACAATCATAACAAGCCGAGGGCAAATTTCGGTACCCCAGTCGTTGAATAAAACAGTTAAAAAATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGGTGAATTTTCTCTTTGCTCGATGCCTTGTTCTGTGTTTTTTTGGCGGGTTTTTGTTTAATTCGAAAATTAAAGTCTACTATTGATAGCTGAGGGAAAACTGTTGCAAGAGAGTTAGAGAAGGAAGAAGCCGCTTGCTCTGGAAAATGAGGTTGCCCATGTCCTCGCCCACTTATTCCCATTCTCTCAACAATCGACAGCAGGTCAATTTTTATAATTTTTTGTTTTTTCATTGCAATTAATTGATGGGTGTTGCATAATTTGTGCTCCAAATACTTCAATCCTTCTTTTGTAATGTAATTTGTGTCTGTTCTTTTTGGGTATTTTGTTGGTTGTAGGATTTGATCAAATCTGCTTTTCAAGACATCTTTGCTGATGAGCTGAAAAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGGTGAACTTTCCGATGCTGTTTTATTTTCTGAAGTTCATTATCTCAAAGTTTGTATATTCTGTGGCTTTCTTCCAAGGACTAAATGGTTTGTCATTCTCCGGGGAAACTGTGTTTTTTGGTAGTCATTAATTTGGATTGATTTTCATTAGTTCAGTGCATGCAGCAATAGTCAATGTCAAGTAATAATAATAATTGAACTTGTGTATTGTTTCATCTGTTCTTTTAATTTTATTGATGTTACTGCAGGTTCTGTTGTAATATATGGTGATCGATCTTCTCTGTTATTATTTTAGCATTTAAAAACCCTATTTTGAGTAGGATGTTTACTCAGTTTTTTGCAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGGTTAGTTTTCATCCCTACTTTTGAGGGTTGTGAACATTTGTCCATGCAAATTACAAAATCTTATGCCTCCTACAAGAGTAATTATCTTGAAATTTTGTATACTTTCGGTGTTTTTTTTAATCATATCTTACATTTACATTGGTTAGGCATGATTTATTCTTAGTGTAATCATAAGCTTACATGTCCTGTTTAAAATTTCACGTTAGATTCTTGAGAAGTTCTGGTGCCCTATGTGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTCCACTTGATCTTAAGACCTCTTAGTTGATCATCCTCTTCTTAATCCCATCTTTTACTCCAAGGTCCATATTAAGTTATTAGGCAGTTGCTATTACTTGAGTGAGTATCAATCAATGGTTGTTGTCTTCTTAACATGTCAGATTATTCTTGCAGCTAATATGTTACTTCCTGAATGAATTATGAAGACCACTCTCAACTTAGACTGGAAGTTGGTGCCTATATTTATTGTCATTTGGTCATGGGACAGATGTTATATGAACTTTCCAACCCTCCCCCCCAATAATAAAATAAAATAAAAAGAGAAAAGAGAAAAACTAATGAAAATAAATGTCTTTGGAAGGTAAATTTGATTATCTTGTGCTGCGCTGTGGTGTCCTACTGGCCATGTCTGGCATAGAATAACTGTGTGCAATAATATCAGTATATGATATTGAAGTCGTAATTCGTCGAAATGTTAACTTTGCAATTTTTTTATTATTTGTCATATGACCTTTCAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAGCATGTTAATTAAGAATCACCTGTCTCAACGTTTGTGATTAAAATGATTTTTTATTGGTTATGACAAAAGATGATTGTGACACTCGAGGTTGTGAATTAATTGTAACATACCATGCTAAGAATCAGGTACCTGAAAGTTTATCGACGAGATTCTTCGTACTTAGATACGACAGAAAAATGATAACACATTTGTGTTTAAAATAAAGGCTCGTGAAGAATTTAGTGACTC

mRNA sequence

ATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGCTGAGGGAAAACTGTTGCAAGAGAGTTAGAGAAGGAAGAAGCCGCTTGCTCTGGAAAATGAGGTTGCCCATGTCCTCGCCCACTTATTCCCATTCTCTCAACAATCGACAGCAGGATTTGATCAAATCTGCTTTTCAAGACATCTTTGCTGATGAGCTGAAAAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGATTCTTGAGAAGTTCTGGTGCCCTATGTGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAG

Coding sequence (CDS)

ATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGCTGAGGGAAAACTGTTGCAAGAGAGTTAGAGAAGGAAGAAGCCGCTTGCTCTGGAAAATGAGGTTGCCCATGTCCTCGCCCACTTATTCCCATTCTCTCAACAATCGACAGCAGGATTTGATCAAATCTGCTTTTCAAGACATCTTTGCTGATGAGCTGAAAAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGATTCTTGAGAAGTTCTGGTGCCCTATGTGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAG

Protein sequence

MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPTYSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVVI*

Homology

[Close]

BLAST of CsaV3_1G007790 vs. NCBI nr
Match: XP_011651131.1 (uncharacterized protein LOC101216926 isoform X1 [Cucumis sativus] >KGN64242.1 hypothetical protein Csa_013956 [Cucumis sativus])

HSP 1 Score: 553.5 bits (1425), Expect = 9.8e-154
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]

BLAST of CsaV3_1G007790 vs. NCBI nr
Match: XP_031737332.1 (uncharacterized protein LOC101216926 isoform X2 [Cucumis sativus])

HSP 1 Score: 543.1 bits (1398), Expect = 1.3e-150
Identity = 263/266 (98.87%), Postives = 263/266 (98.87%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVDLRQK   DPIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQK---DPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 263

[Close]

BLAST of CsaV3_1G007790 vs. NCBI nr
Match: XP_008437393.1 (PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo])

HSP 1 Score: 536.6 bits (1381), Expect = 1.2e-148
Identity = 256/266 (96.24%), Postives = 262/266 (98.50%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD IKSAFQDIF+DELKKIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVD+RQKESE PIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCPMCKQGELQEN+HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]

BLAST of CsaV3_1G007790 vs. NCBI nr
Match: XP_038893884.1 (uncharacterized protein LOC120082685 isoform X1 [Benincasa hispida])

HSP 1 Score: 513.8 bits (1322), Expect = 8.6e-142
Identity = 241/266 (90.60%), Postives = 256/266 (96.24%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           ME+D PN VIQT RSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPM+SP+
Sbjct: 1   MEDDDPNSVIQTHRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMTSPS 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD IKSAFQDIF+DELKKIKD+SVNDYN+NLPSVPEAADVLWEYEG+ DAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDQSVNDYNKNLPSVPEAADVLWEYEGVQDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EG+GEEILLEMQRIFYEDLN+DLR KESE PIVTWEDEEDEFLARAVYEHM+L++EK+LE
Sbjct: 121 EGEGEEILLEMQRIFYEDLNIDLRYKESEGPIVTWEDEEDEFLARAVYEHMELNSEKVLE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCP+CKQGELQENNHFIHCTHCGLRL KGNEVTLDLLRCRLADVHAEHLDRGCRLKP 
Sbjct: 181 KFWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDLLRCRLADVHAEHLDRGCRLKPN 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVES+FNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESKFNITALYISCEGCNTFEVVI 266

[Close]

BLAST of CsaV3_1G007790 vs. NCBI nr
Match: TYJ99094.1 (uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 2.5e-141
Identity = 254/308 (82.47%), Postives = 260/308 (84.42%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD IKSAFQDIF+DELKKIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQK---------------------------------- 180
           EGDGEEILLEMQRIFYEDLNVD+RQK                                  
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKGDFADAVYFLKFIISKFVYSVAVFQGLNAFKNAI 180

Query: 181 ----------ESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENN 240
                     ESE PIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQEN+
Sbjct: 181 LSRMFTQFFAESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENS 240

Query: 241 HFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC 265
           HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC
Sbjct: 241 HFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC 300

[Close]

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL
Match: A0A0A0LTY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 4.8e-154
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL
Match: A0A1S3AU18 (uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 6.0e-149
Identity = 256/266 (96.24%), Postives = 262/266 (98.50%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD IKSAFQDIF+DELKKIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVD+RQKESE PIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCPMCKQGELQEN+HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISCEGCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL
Match: A0A5D3BJ40 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002980 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 254/308 (82.47%), Postives = 260/308 (84.42%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD IKSAFQDIF+DELKKIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQK---------------------------------- 180
           EGDGEEILLEMQRIFYEDLNVD+RQK                                  
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKGDFADAVYFLKFIISKFVYSVAVFQGLNAFKNAI 180

Query: 181 ----------ESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENN 240
                     ESE PIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQEN+
Sbjct: 181 LSRMFTQFFAESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENS 240

Query: 241 HFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC 265
           HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC
Sbjct: 241 HFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISC 300

[Close]

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL
Match: A0A6J1C935 (uncharacterized protein LOC111008573 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008573 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.2e-127
Identity = 219/266 (82.33%), Postives = 240/266 (90.23%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           MEE+ PN   Q RR S+KTHPRYNN QSWKQKLRENC KRVREGRSRLLWKMRLP+SSPT
Sbjct: 22  MEEEDPNSTTQIRRPSLKTHPRYNNYQSWKQKLRENCYKRVREGRSRLLWKMRLPVSSPT 81

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSLNNRQQD +KSAFQDIF+DELKKIKD+S+NDY+  LPS PE  DVLWEYEGI DAY
Sbjct: 82  YPHSLNNRQQDFVKSAFQDIFSDELKKIKDQSLNDYDNKLPSAPECDDVLWEYEGIQDAY 141

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EG+GEEILLEMQRIFYEDL+VD+RQK SE PIVTWEDEEDEFLARAVYEHMQL++EK+ E
Sbjct: 142 EGEGEEILLEMQRIFYEDLDVDVRQKGSEGPIVTWEDEEDEFLARAVYEHMQLNSEKVFE 201

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           KFWCP+CKQGEL ENN  IHCTHCGL+L+K NEVT+DLLR RLADVHAEHLDRGCRLKP 
Sbjct: 202 KFWCPICKQGELLENNRSIHCTHCGLQLSKANEVTMDLLRSRLADVHAEHLDRGCRLKPM 261

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVE+RF+ITALYISCEGC TFE+VI
Sbjct: 262 FCVENRFDITALYISCEGCGTFEIVI 287

[Close]

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL
Match: A0A6J1GT42 (uncharacterized protein LOC111457192 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457192 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.8e-124
Identity = 216/266 (81.20%), Postives = 240/266 (90.23%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+KLRENCCKRVREGR+RLLWKMR    SP 
Sbjct: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMR----SPG 60

Query: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
           Y HSL++RQQD I+S+FQDIF+DELKKIKDE+ N+  +NLPS PE+ DVLWEYEG+HDAY
Sbjct: 61  YLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLPSAPESDDVLWEYEGLHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
            G+GEEILLEMQRIFYEDLNVDL+QKESE PIVTWEDEEDEFLARAVYEHMQL++EK L 
Sbjct: 121 GGEGEEILLEMQRIFYEDLNVDLKQKESEGPIVTWEDEEDEFLARAVYEHMQLNSEKDLG 180

Query: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240
           K WCP+CKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRL+P 
Sbjct: 181 KLWCPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLRPM 240

Query: 241 FCVESRFNITALYISCEGCNTFEVVI 267
           FCVESRFNITALYISC+GCNTFEVV+
Sbjct: 241 FCVESRFNITALYISCKGCNTFEVVM 262

[Close]

BLAST of CsaV3_1G007790 vs. TAIR 10
Match: AT4G12760.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-65
Identity = 129/255 (50.59%), Postives = 176/255 (69.02%), Query Frame = 0


Query: 13  RRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPTYSHSLNNRQQDL 72
           +R+S K+ P + +    KQK RENC +RVRE R+RLLWK+R+       S   ++ Q+++
Sbjct: 13  KRTSNKSQPDF-DYSIRKQKFRENCFRRVREDRTRLLWKLRI-------SDCQSSDQKEI 72

Query: 73  IKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEY-EGIHDAYEGDGEEILLEM 132
           I  AFQDI +DELKKI+D S N  + N     +  D+LWEY EG+   YEGD EEILLEM
Sbjct: 73  INCAFQDIVSDELKKIEDSSRN-LSGNKTLTEDCDDILWEYEEGLKGVYEGDSEEILLEM 132

Query: 133 QRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGE 192
           Q+IFY+DL  +     S   + TWEDEED++LA  V ++M L++E+   + WCP+CK+GE
Sbjct: 133 QQIFYKDLLSETNVNGSFVQVETWEDEEDDYLAALVSQNMCLNSEQEESQIWCPICKKGE 192

Query: 193 LQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITA 252
           L EN+  I C  C ++LNKG EV L++L+ RLA+ H EHL RGCRLKP+F V+S +N+ A
Sbjct: 193 LMENHRHIDCNMCDMQLNKGEEVNLNILQERLAEAHGEHLQRGCRLKPEFSVQSVYNLKA 252

Query: 253 LYISCEGCNTFEVVI 267
           LYI+CE C TFEVV+
Sbjct: 253 LYITCEACKTFEVVV 258

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651131.1	9.8e-154	100.00	uncharacterized protein LOC101216926 isoform X1 [Cucumis sativus] >KGN64242.1 hy...	[more]
XP_031737332.1	1.3e-150	98.87	uncharacterized protein LOC101216926 isoform X2 [Cucumis sativus]	[more]
XP_008437393.1	1.2e-148	96.24	PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo]	[more]
XP_038893884.1	8.6e-142	90.60	uncharacterized protein LOC120082685 isoform X1 [Benincasa hispida]	[more]
TYJ99094.1	2.5e-141	82.47	uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G007790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G007790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTY4	4.8e-154	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1	[more]
A0A1S3AU18	6.0e-149	96.24	uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=...	[more]
A0A5D3BJ40	1.2e-141	82.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1C935	2.2e-127	82.33	uncharacterized protein LOC111008573 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GT42	8.8e-124	81.20	uncharacterized protein LOC111457192 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_1G007790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12760.1	1.8e-65	50.59	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028159	RPA-interacting protein, C-terminal domain	PFAM	PF14768	RPA_interact_C	coord: 183..264 e-value: 1.3E-20 score: 73.7
IPR028158	RPA-interacting protein, N-terminal domain	PFAM	PF14766	RPA_interact_N	coord: 13..55 e-value: 3.2E-10 score: 39.4
IPR028155	RPA-interacting protein, central domain	PFAM	PF14767	RPA_interact_M	coord: 75..167 e-value: 3.6E-21 score: 75.6
IPR028156	RPA-interacting protein	PANTHER	PTHR31742	RPA-INTERACTING PROTEIN RPAIN	coord: 11..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007790.1	CsaV3_1G007790.1	mRNA