CsaV3_1G006920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G006920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 4392495 .. 4393177 (+)
RNA-Seq Expression	CsaV3_1G006920
Synteny	CsaV3_1G006920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTGAACTTTTGAGCACTATAAAAGCAGCTCATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGAAAAATAGACAACCTCTGGCCTTCTTCTTTTCTTCTTCTTCTTTTTCTTCTATAGGAAACAAATTATGTTTTGGGTTTTTAAAGCCATGAGAGAAACAGAGAGAGAGCTTGTTTTGAAGATACTGATTGACATCAATTTTGTTACATTTTCATCGTGATTTAGCAACCTCCAGTTTAGTACTTCTCTTTTATTATTGTTATTATCATTATAGTGTTGATACAAATAGTTAGACGTTCTAACATGATTTGCTTTCTTTACCATGCAAGGCTTAGGTTTTATATAGATGCCTTACATATCTTTATATCTTCCAAATATCACAGTCTTTAACAAGTATCCGT

mRNA sequence

ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Protein sequence

MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA*

Homology

[Close]

BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFT 60
           MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFT
Sbjct: 1   MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFT 60

Query: 61  LCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA 103
           LCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA
Sbjct: 61  LCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA 102

[Close]

BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 88
           MARLMRE  SQNGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1   MARLMREFGSQNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60

Query: 89  YGGGCAAGCGAGCGA 103
           YG GCAAGCGAGCGA
Sbjct: 61  YGAGCAAGCGAGCGA 74

[Close]

BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          MARL+ EI S +GSFGL+ G+   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLIGEIGSVDGSFGLS-GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60

Query: 89 GGGCAAGCGA 99
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of CsaV3_1G006920 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 91.3 bits (225), Expect = 5.3e-15
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
           M RL R+++S +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1   MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 70

[Close]

BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KAF3438595.1 (hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis])

HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 33  MREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGC 92
           M  +SS +GS   AG   Y   W+AL ++CI+S +IFSC+DG+SK++ ST D ELYGGGC
Sbjct: 1   MVRLSSVDGSSSYAGFLVY--LWLALLSVCILSAIIFSCTDGVSKEKTSTADTELYGGGC 60

Query: 93  AAGCGAGCGA 103
           AAGCGAGCGA
Sbjct: 61  AAGCGAGCGA 68

[Close]

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
           MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY
Sbjct: 1   MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
           M RL R+++S +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1   MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 70

[Close]

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 88
           M RL RE +  +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1   MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 89  YGGGCAAGCGAGCG 102
           YGGGCAAGCGAGCG
Sbjct: 61  YGGGCAAGCGAGCG 74

[Close]

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
           M RL RE+++ +G  G   G         L TLCI+ST+IFSC+DG+SK++ S  D ELY
Sbjct: 1   MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
           M RL RE+++ +G  G   G         L TLCI+ST+IFSC+DG+SK++ S  D ELY
Sbjct: 1   MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of CsaV3_1G006920 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 0


Query: 48  GETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCG 102
           GE     W A+    +I+ +IFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14  GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of CsaV3_1G006920 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 51  YWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGC-AAGCGAGCG 102
           + + ++A+   CI+S L+FSC+DG+S D  +T      GGGC  AGCG GCG
Sbjct: 25  FHVVFLAVIGCCILSALLFSCADGVS-DNRATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652552.1	7.9e-51	100.00	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6584341.1	3.3e-25	85.33	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572949.1	1.5e-17	72.86	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	5.3e-15	58.11	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
KAF3438595.1	4.5e-14	60.00	hypothetical protein FNV43_RR21358 [Rhamnella rubrinervis]	[more]

BLAST of CsaV3_1G006920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	2.5e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	2.6e-15	58.11	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A2P5AQX4	2.2e-14	56.76	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]
A0A803R005	3.7e-14	56.76	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	3.7e-14	56.76	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CsaV3_1G006920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	1.8e-05	42.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	1.8e-05	46.15	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 27..102
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 27..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G006920.1	CsaV3_1G006920.1	mRNA