CsaV3_1G006610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006610
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 4248137 .. 4248416 (+)
RNA-Seq ExpressionCsaV3_1G006610
SyntenyCsaV3_1G006610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

mRNA sequence

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Coding sequence (CDS)

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Protein sequence

MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR*
Homology
BLAST of CsaV3_1G006610 vs. NCBI nr
Match: KGN64118.1 (hypothetical protein Csa_013851 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

BLAST of CsaV3_1G006610 vs. ExPASy TrEMBL
Match: A0A0A0LQS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64118.11.8e-23100.00hypothetical protein Csa_013851 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQS18.7e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006610.1CsaV3_1G006610.1mRNA