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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGGTTCAGGAATAAGGTAA mRNA sequence ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA Coding sequence (CDS) ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA Protein sequence MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR*
Homology
BLAST of CsaV3_1G006610 vs. NCBI nr
Match: KGN64118.1 (hypothetical protein Csa_013851 [Cucumis sativus]) HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1 MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58
BLAST of CsaV3_1G006610 vs. ExPASy TrEMBL
Match: A0A0A0LQS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1 MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN64118.1 | 1.8e-23 | 100.00 | hypothetical protein Csa_013851 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LQS1 | 8.7e-24 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042300 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 30..58 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 30..51 |
Relationships
The following mRNA feature(s) are a part of this gene:
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