CsaV3_1G006450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G006450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Single-stranded DNA-binding protein
Location	chr1: 4103542 .. 4106425 (-)
RNA-Seq Expression	CsaV3_1G006450
Synteny	CsaV3_1G006450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCGACTATCTGAAGGGTTCTAACTTTCTAGGGTTTAAGCCATGCGCTAAACTTCTGAGTTTCTCTACAGATTGCCAATTACGAAGACGATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGTACGTTGGATGATGTATAGGTGCTTTGAGACTTTCGATTCTCGATGTTTTTTTGCTTACATTTTCATCTTATTGACATTTCGTGTTTGCTTGAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGGTAAGCATTTCAGTCTTGATCATTTACCTGAGGTACATGGAGATAATATCATAGAAATTTATTTATATTCTGCCATCAATTCTTAACAACGAGCTTATGTTTGATTAGTATAGTGATGGGAAGCTGTACTCGATTAATTTGAATTCCAAACTGTGCCCGTTATTAACTTTGTAGTTATCGTTTTTTTCTGGTTCATGTTACTCCGTTTCTCACAAAAGATATTGTTGTAGTCTTAGTTTCGCTGTTCTTTGTTGCAGCTTTATTCTTACAGTGTAAATTTGTCCTTGTCAGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGTACATCACTTACCCCTTCATTCTTTAAAGCGGTCTTTTGTGGTTTTTTTAATCATATGTTCTTTCAAACGGTTTCTTTTACAAAAGAAAATGGTACAACCCTTGTTATGTTTTAGTACCCTGCTTCTATGAATATAGAGTTCCTCATGTATTATGGCTACTTAATTAAACTACATACCATTTGTGTCATCTTTAATAAAAAAGAATTCGGCAAGTTTTGTTCTGAACTGTGACGAAGGTACAGCCTCTTTACGATGTGAATGTCCTTTCTTGGACGTGATATGTATTTTAACTAAAAAAAGAAAAGCAAATTTATTTTCTTCTGTAGGCTGAAAAACCTATATAGATTCTGACCGACTGGTATTTGAATTATAATGTTGGGTCTATGGTTTTTCCATTTGTTTTTTCATGGCCTGATTCTTTGTGAATCGGAGGAATTATAAAGAATTTGATTGCTTTTGTGCTGACTTGACATTCATGCATGCTGAAACAAATGGCCCTAGGATCACCACATATGACCTCCGTTGATAAAGTTTGGTTGTTATGTAGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAAGAGACGTTTGCAGTTTTGTCATCTGAAGGTTTGAATCACCCACTTCTCTCTGTAAATGCTGTTATTTCACTTCACAGACTTGCAATAAGACATTCAGAAAAGGATCTACTGCATGGCCTAGTGATGATTCCCTTCCCCCCCCCCCCCCCCCACCCTCTGTCGAGCGACAAATGTCTTTGATATTTATACGATTTAAATGAATTTGATTGAGAGAGAATTGAAATCCACTTCTTCATTGTTTTTCAACCGTGTACACGACTTGTTGTTTCTTTTGAGATGTTTATTTTGTGCTTGCATGTTCAGTTGCAGGGGTCATGGGCATAGTTATGGTTAGACAGAGTGAATGCTGTCTTTTTGTGAAACAAGCATCAGTACTTTCAATGCGCAAGACAATCTTTGATGGGTTATTAGAGGCACATGTGTGAGCAATGGAGCCACATAATGTATGAGTATGAGTTGGTAGATTGAAAATTGAAATTCAAATGCCTGAATCTGATAACTGATAACTTAAAATAAAAAATGCCATAACTGGGAATGATTGAGTTTCGTACATTGTGATGCTATGTATTTTCAATAATAGACAATGAATGAAATTGGCATTTTCTAGAAAATAGATACTAAAAATATGACAGAAGATTGTGTTTGGTTCGTAATGGTGCAGAAAGGGATAATAAGGTGACGGATAATCTACAAAAAGCAACGTGAAGGTGACTGAGATGATTGCTGGAGGGAAACTTGCTTCTCATCAAACTGCTTTTGGTGTAGAAAAATTGTTCCGAACGTTAGAAGAAAAGTTAATGTATTTGAATGTCTTTTTCTATAATTTAACCTAAATTAAACAATTGAAAGGTGTCACTTAACATTTCTCGTGATCAAATTGGTGATGTGTTAAAATTATTGCTCCGAAT

mRNA sequence

ATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAA

Coding sequence (CDS)

ATGACCTCCATGGTTGCACTGTCAAGAAGGCTTTGCCGCTCTCTCCTATCGAATTCAAAAGCTTCTCATCATTACGATATCCTCCCAGTAACCTATTGCACTAATAACCTTTCCTTCCGCTCGGTATCAGACATCACTGAGTCCGGTATTGAATCGGACTTGTACACGGAATTGGACTCAAATTCAGTAACTAATCAACCTTCTCTCTCACCGTCCTCGTCCCAATCACCCACCCAACCGAGACCGGTCTATAATCGACCTCTGGAAAATGGCCTCGATGCTGGCATTTATAAGGCTATATTGGTGGGTAAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGAAGAACAGTGACGCTGTTATCAGTTGGGACAGGGGGTATTCGTAATAATCGGAGACCCTTGGCTAACGAGGAACCCAGAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTACGAGACTGGGCAATATCGTCATGAAGCATGTTGTGCCCGGTTCAATTTTGTATTTGGAAGGGAACTTGGAGACCAAAATCTTCACTGATCAAGTCACTGGTCTTGTTCGACGTATTAGAGAAGTTGCGATTCGTGGCAATGGACGGCTTGTATTTTTGGGGAAGGGAGAAGGTAATGCTCAGGAGTCCACCCCATCAGAATTCAGAGGTGTTGGCTATTACTAA

Protein sequence

MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY*

Homology

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BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_011650431.1 (single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_031745512.1 single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >KGN64102.1 hypothetical protein Csa_013261 [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 9.0e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

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BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_008455960.1 (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 433.7 bits (1114), Expect = 1.0e-117
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

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BLAST of CsaV3_1G006450 vs. NCBI nr
Match: TYJ98975.1 (single-stranded DNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.0 bits (1094), Expect = 2.1e-115
Identity = 217/231 (93.94%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGV 232
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

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BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_038895598.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038895599.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107
Identity = 205/234 (87.61%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSRRLCRSLLSNSKASHH++ILPVT CTNNLSFRSVSDITES IESDL  + DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTSCTNNLSFRSVSDITESSIESDL--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PSLSPSSSQS TQ R +YNRPLENGLDAG+YKAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTQSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTD  TGLVR IREVAIR NGRLVFLGKGE N Q+STPSEF+GVGYY
Sbjct: 181 GNLETKIFTDPTTGLVRSIREVAIRRNGRLVFLGKGEVNGQQSTPSEFKGVGYY 232

[Close]

BLAST of CsaV3_1G006450 vs. NCBI nr
Match: XP_038893715.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893716.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893717.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893718.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 396.4 bits (1017), Expect = 1.8e-106
Identity = 202/234 (86.32%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSRRLCRSLLSNSKASHH++ILPVTYCTNNLSFRSVSDITES IES+L  + DS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTYCTNNLSFRSVSDITESSIESNL--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN PSLSPSSSQS T  R +YNRPLENGLDAG+YKAILVG+VGQSPLQK+LKSG TV
Sbjct: 61  HSVTNPPSLSPSSSQSSTLSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLG+IVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGDIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIF D  TGLVRRIREVAIR NGRL+ LGKGEG+AQ+STPSEF+GVGYY
Sbjct: 181 GNLETKIFIDPTTGLVRRIREVAIRRNGRLLLLGKGEGDAQQSTPSEFKGVGYY 232

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BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-21
Identity = 56/171 (32.75%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 47  ESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVG 106
           + G+E D        +VT +P L P        PR  +          G+++AI+ GKVG
Sbjct: 38  DEGVEEDF-----EENVTERPELQPHG----VDPRKGWG-------FRGVHRAIICGKVG 97

Query: 107 QSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNI 166
           Q+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+        QWHR++++   LG+ 
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 157

Query: 167 VMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGE 218
            ++ +   S +Y+EG++ET+++ D ++  V+ I E+ +R +G++  +  GE
Sbjct: 158 AVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186

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BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot
Match: Q8UF87 (Single-stranded DNA-binding protein OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=ssb PE=3 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 96  IYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHR 155
           + K IL+G VG  P  ++ + GR +  L + T     +R     +E  E        WH 
Sbjct: 5   VNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTE--------WHT 64

Query: 156 VSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRG-NGRLVFL- 215
           V ++   L  +V ++V  G+ LY+EG L+T+ + DQ TG  R   E+ ++G N  L  L 
Sbjct: 65  VVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEIVLQGFNSTLTMLD 124

Query: 216 GKGEGNAQESTPSEFRGVGYY 235
           G+GEG    S   +F G   Y
Sbjct: 125 GRGEGGGGRSGGGDFGGGNDY 136

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BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot
Match: Q8DCJ0 (Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=ssb PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-10
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K ILVG +G  P  + + SG  V  ++V T       R  A  EPRE       +WH
Sbjct: 5   GINKVILVGNLGNDPEIRYMPSGGAVANITVATS---ETWRDKATGEPRE-----KTEWH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRG-NGRLVFL 214
           RV++Y  +L  +  +++  GS +Y+EG L+T+ + DQ  G  R   EV ++G NG +  L
Sbjct: 65  RVTLY-GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-NGQDRYSTEVVVQGYNGIMQML 124

Query: 215 G----KGEGNAQESTPSEFRG 231
           G    +G   A    P + +G
Sbjct: 125 GGRQQQGGAPAMGGAPQQQQG 135

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot
Match: P57610 (Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=ssb PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.4e-10
Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           G+ K IL+G +GQ P  + + +G  V  +++ T     ++    N+E  E        WH
Sbjct: 5   GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           R+ ++  +L  I  +++  GS +Y+EG+L+T+ + DQ  GL R   E+ +   G +  LG
Sbjct: 65  RIVLF-GKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQMLG 124

Query: 215 KGEGNAQESTPSEFRGVG 233
               N Q  T ++    G
Sbjct: 125 NRNSNLQAMTVNDKNSTG 132

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot
Match: Q8D254 (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 95  GIYKAILVGKVGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWH 154
           GI K IL+G +GQ P  + + +G  +T LS+ T     N R     E +E       +WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEWH 64

Query: 155 RVSIYPTRLGNIVMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLG 214
           RV ++  +L  +  +++  GS +Y+EGNL+T+ + DQ  G  R I E+ +  NG +  LG
Sbjct: 65  RVILF-GKLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQMLG 114

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.4e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.8e-118
Identity = 220/234 (94.02%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL
Match: A0A5D3BKT6 (Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001780 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.0e-115
Identity = 217/231 (93.94%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTS VALSRRLCRSLLSNSKASHH+DILPVTYCTNNLSFRSVSDITESGIESDLY+ELDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           NSVTNQPS SPSSSQSPTQ R VY+RPLENGLDAGI+KAILVGKVGQSPLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLGNIVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGV 232
           GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGK EGNAQEST SE RGV
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGV 231

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.9e-102
Identity = 195/234 (83.33%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM  LSRRL RS LSNSKASHH+DILPV Y + NLSFRSVSDI ES I+SD+  +L S
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDM--DLGS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SV+N+PSLSPSSSQS +Q R +YNRPLENGLDAGIYKAILVG+VGQSPLQKQLKSGRTV
Sbjct: 61  HSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYP RLG++VMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTD  TGLVRRIREVAIR +GRLVFLGKGEG+ Q+ST  EF+GVGYY
Sbjct: 181 GNLETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.9e-102
Identity = 193/234 (82.48%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60
           MTSM ALSR+LCRSLLSNS+ASHH + L +TYCTNN SFRS S+I +S I+SD+  + DS
Sbjct: 1   MTSMAALSRKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDM--DSDS 60

Query: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120
           +SVTN+PS+SPSSSQS TQ R +YNRPLENGLDAGIYKAILVG+ GQSPLQKQLKSGRTV
Sbjct: 61  HSVTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQAGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVS+YP RLG IVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           GNLETKIFTD +TGLVRRIREVAIR NGRLVFLG G GN Q+ST SEF+GVGYY
Sbjct: 181 GNLETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of CsaV3_1G006450 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 261.2 bits (666), Expect = 8.3e-70
Identity = 142/232 (61.21%), Postives = 173/232 (74.57%), Query Frame = 0


Query: 3   SMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDSNS 62
           SM  LSRRL RSLLSN + S       +++CTNN++    SD  E  +ES +        
Sbjct: 4   SMATLSRRLYRSLLSNPRISQ----ASMSFCTNNITSPEDSDFDE--LESPI-------- 63

Query: 63  VTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTVTL 122
              +P  S   S+   + R +  RPLENGLD+GI+KAILVG+VGQ PLQK+LKSGRTVTL
Sbjct: 64  ---EPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTL 123

Query: 123 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLEGN 182
            SVGTGGIRNNRRPL NE+PREYA+R AVQWHRVS+YP RL ++V+K+V PG+++YLEGN
Sbjct: 124 FSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGN 183

Query: 183 LETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 235
           LETKIFTD VTGLVRRIREVAIR NGR+VFLGK  G+ Q+ + +E RGVGYY
Sbjct: 184 LETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKA-GDMQQPSSAELRGVGYY 217

[Close]

BLAST of CsaV3_1G006450 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-22
Identity = 56/171 (32.75%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 47  ESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVG 106
           + G+E D        +VT +P L P        PR  +          G+++AI+ GKVG
Sbjct: 38  DEGVEEDF-----EENVTERPELQPHG----VDPRKGWG-------FRGVHRAIICGKVG 97

Query: 107 QSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNI 166
           Q+PLQK L++GRTVT+ +VGTGG+ + R   A  +P+        QWHR++++   LG+ 
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 157

Query: 167 VMKHVVPGSILYLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGE 218
            ++ +   S +Y+EG++ET+++ D ++  V+ I E+ +R +G++  +  GE
Sbjct: 158 AVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650431.1	9.0e-127	100.00	single-stranded DNA-binding protein, mitochondrial [Cucumis sativus] >XP_0317455...	[more]
XP_008455960.1	1.0e-117	94.02	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]	[more]
TYJ98975.1	2.1e-115	93.94	single-stranded DNA-binding protein [Cucumis melo var. makuwa]	[more]
XP_038895598.1	1.6e-107	87.61	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_038893715.1	1.8e-106	86.32	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]

BLAST of CsaV3_1G006450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	4.1e-21	32.75	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8UF87	3.2e-10	31.91	Single-stranded DNA-binding protein OS=Agrobacterium fabrum (strain C58 / ATCC 3...	[more]
Q8DCJ0	7.2e-10	34.04	Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain CMCP6) OX=21689...	[more]
P57610	9.4e-10	28.26	Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon ...	[more]
Q8D254	1.2e-09	34.17	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]

BLAST of CsaV3_1G006450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL6	4.4e-127	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A1S3C3D2	4.8e-118	94.02	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3BKT6	1.0e-115	93.94	Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1KGM8	4.9e-102	83.33	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C717	4.9e-102	82.48	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]

BLAST of CsaV3_1G006450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18580.1	8.3e-70	61.21	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G11060.1	2.9e-22	32.75	mitochondrially targeted single-stranded DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 98..205 e-value: 2.7E-18 score: 65.9
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 96..211 score: 12.581932
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 100..205 e-value: 1.15953E-12 score: 60.3186
None	No IPR available	GENE3D	2.40.50.140		coord: 95..213 e-value: 5.1E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 2..234
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 2..234
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 95..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G006450.1	CsaV3_1G006450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003697	single-stranded DNA binding