CsaV3_1G006300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G006300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 4016668 .. 4017290 (+)
RNA-Seq Expression	CsaV3_1G006300
Synteny	CsaV3_1G006300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTAATCAAACAACAACATCAGTTTTTATAAATGTATGTGTCGACGTCTTTTGTGATGTAAGTTTGTTGTTGTTGATTACTTTTGTTAAATCATTACGGATATATCTCAAATACTCGAGTTTGTGAGTTTCTCACTCAGTTATATCGAACCAACTTGAAAATTTGTAGAAGGAATTTAAGAAGTAAAAGTGTATGTATGATAGCTTTTTGCTCAGCTTAAAATTTATGTAACTGTAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

mRNA sequence

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Coding sequence (CDS)

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Protein sequence

MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPKNNGGGKYL*

Homology

[Close]

BLAST of CsaV3_1G006300 vs. NCBI nr
Match: XP_031736121.1 (uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical protein Csa_014013 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

[Close]

BLAST of CsaV3_1G006300 vs. NCBI nr
Match: TYJ98963.1 (hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 4.7e-45
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLG-KETQEDVMKKMERIRVKEQDGCRS 60
           MAS RL L FLF FV LRGGVADGRSYPVST V   KE ++D+MKKMERIRVKE DGCRS
Sbjct: 3   MASVRL-LIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCRS 62

Query: 61  SPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPP 120
           SPST DSSDNLY+ KK+ LNVKYKW+N   KS GGHL ND+GSRFIA+NADYFVAKPHPP
Sbjct: 63  SPSTIDSSDNLYKKKKKSLNVKYKWVN---KSHGGHLPNDKGSRFIAFNADYFVAKPHPP 122

Query: 121 KNNGGGKYL 129
           KNN GGKYL
Sbjct: 123 KNN-GGKYL 126

[Close]

BLAST of CsaV3_1G006300 vs. NCBI nr
Match: XP_022137288.1 (uncharacterized protein LOC111008786 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLR-----GGVADGRSYPVSTQVLGKETQEDVMKKM---ERIRVK 60
           MAS R  + FL AF  L      G +A GR+YP     +G E Q + ++KM   E +R  
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 61  EQDGCRSSPSTTDSSDNLYQNKK-RILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADY 120
           +++G   S ST+ S+ NL   K     + K K I+KRD +   H L+ E S F+ +NADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 121 FVAKPHPPKNNGG 125
           FVAKPHPPKNNGG
Sbjct: 121 FVAKPHPPKNNGG 133

[Close]

BLAST of CsaV3_1G006300 vs. ExPASy TrEMBL
Match: A0A0A0LVN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.1e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

[Close]

BLAST of CsaV3_1G006300 vs. ExPASy TrEMBL
Match: A0A5D3BI53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001660 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLG-KETQEDVMKKMERIRVKEQDGCRS 60
           MAS RL L FLF FV LRGGVADGRSYPVST V   KE ++D+MKKMERIRVKE DGCRS
Sbjct: 3   MASVRL-LIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCRS 62

Query: 61  SPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPP 120
           SPST DSSDNLY+ KK+ LNVKYKW+N   KS GGHL ND+GSRFIA+NADYFVAKPHPP
Sbjct: 63  SPSTIDSSDNLYKKKKKSLNVKYKWVN---KSHGGHLPNDKGSRFIAFNADYFVAKPHPP 122

Query: 121 KNNGGGKYL 129
           KNN GGKYL
Sbjct: 123 KNN-GGKYL 126

[Close]

BLAST of CsaV3_1G006300 vs. ExPASy TrEMBL
Match: A0A6J1C9X6 (uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008786 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 1   MASPRLRLFFLFAFVLLR-----GGVADGRSYPVSTQVLGKETQEDVMKKM---ERIRVK 60
           MAS R  + FL AF  L      G +A GR+YP     +G E Q + ++KM   E +R  
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 61  EQDGCRSSPSTTDSSDNLYQNKK-RILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADY 120
           +++G   S ST+ S+ NL   K     + K K I+KRD +   H L+ E S F+ +NADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 121 FVAKPHPPKNNGG 125
           FVAKPHPPKNNGG
Sbjct: 121 FVAKPHPPKNNGG 133

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736121.1	1.7e-66	100.00	uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical ...	[more]
TYJ98963.1	4.7e-45	78.29	hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa]	[more]
XP_022137288.1	1.5e-14	43.61	uncharacterized protein LOC111008786 [Momordica charantia]	[more]

BLAST of CsaV3_1G006300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVN9	8.1e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1	[more]
A0A5D3BI53	2.3e-45	78.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1C9X6	7.2e-15	43.61	uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of CsaV3_1G006300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G006300.1	CsaV3_1G006300.1	mRNA