CsaV3_1G006110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006110
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRHOMBOID-like protein 12, mitochondrial
Locationchr1: 3902842 .. 3904472 (-)
RNA-Seq ExpressionCsaV3_1G006110
SyntenyCsaV3_1G006110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGTAAGAATTACGCTTCTTTTGCCACACAAGTGAGAACCCATAAACTCACCTCTTTCCCTCATTCCTCACTCGCCCACTTCAGGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGGTAATGTGTTTATTCTTTTTCCAACTTTGGCTGTTTTATCAGAACAATTTAACTCCTTGCATGTATAAACGAATTCATACATGAAGAACGTGAAGTCCTTTTGTGTCCAGAATTTCATTTTTACATCGTGCATTCGGATTTTCCCAATTGTATTGTTCTGTTGAAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGTTAGTGCAGTTTCACTAAATATTATATGGGTTTTGTGTAAATATTATAACACAAACGGTTATCATTTGATATTGGGAGTTCTTGAAATTTTTGGAACCTGATTTTTACAATTGTAGGGATAACATGATGATGCCTTCTGTTTCATAGGCACTAGCATTGTATTTTAGGTGTCCCCCATGGCATATAGACTCTTACTGCTTGCTGTTATGAAACTTCATTCTTTGTTATTTTAGGATTAGCATTGTTATTATATATAATGGGTTACTTTAAGTTATATCATATACCAAAATAATTTCGTAACCTTCTACATTTGAAACGGCTTGGTGAATCCTTTATTATTGAATACAATTAAACTGTTTATAGTCCTTTTAACAACGGGGAGGATGCTTGGCATCTGATAAACAAAGTTGATTATTTGGGGAAAGTTCTTATTTGGTTGGATATGAGACTTTGTTCCTTTAACCTTACATACATTTTACTGATCACATTCGACTTTCAAACATCAATATACTTATTAGAATTTGAATAATCATTGGTGTTCGTTTTGCTTTATCACTTAGGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGGTACGATGTTGACTAAACTTTTCTATCCAACTCCATGTTGAGTTCTCTTCTCTGTCACATATAGCTGATCTCCTCCTGTTAGGCAAATTCATAAAATTTGTATGTTCACTGCAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

mRNA sequence

ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

Coding sequence (CDS)

ATGAACAGGCTCTTTTCTCTTTCTCGCATCCTTGCATCAAGGCTCTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAGTTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCCGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCAGGAAGAGTCTAGAACAAATTAGGTCTGAGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACTTGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTACCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTATCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATGCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCATTACGGGCAGTTTTATCATTGGAGTGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCATGCCCTTTCTGAATATCAGAAGAACTTCCATACTCGAAACTATGTTTGA

Protein sequence

MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVLDGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV*
Homology
[Close]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match: KGN64066.1 (hypothetical protein Csa_013348 [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 9.7e-137
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
           MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS
Sbjct: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120
           NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF
Sbjct: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120

Query: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180
           FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL
Sbjct: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180

Query: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 236
           DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV
Sbjct: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 235

[Close]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match: XP_004137444.1 (RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetical protein Csa_013374 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-11
Identity = 53/128 (41.41%), Postives = 65/128 (50.78%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDI----------------------------DHSRSW 60
           MN+LF  SR L SRLSNS+   +LD                             DHSRSW
Sbjct: 1   MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match: XP_038893963.1 (RHOMBOID-like protein 12, mitochondrial [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-11
Identity = 56/128 (43.75%), Postives = 64/128 (50.00%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFP----------------------------TPTLDIDHSRSW 60
           MN+LF  SR LASRLSNSF                             T  L  D SRSW
Sbjct: 1   MNKLF--SRKLASRLSNSFANSQHCKDCASFATLVRTHNQNHLFASSLTRPLQ-DRSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SFAEKI+GF SV   GKRFI N SNTLF+ S++               ++R +LK 
Sbjct: 61  SSHRSFAEKIHGFSSVAVVGKRFILNPSNTLFKGSIKSLVESSSLFTGTPFSKLRFQLKP 120

[Close]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match: XP_023519071.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-11
Identity = 53/126 (42.06%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSN------------SFPTPTLD---------------IDHSRSWS 60
           MN+ F  SR LASRLSN            SF T  L                 DHSRSWS
Sbjct: 1   MNKFF--SRKLASRLSNSYGNSHYCRDCASFSTQVLTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  SHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE--------------QIRSELKLAF 86
           SH SF EKI+GF S P  GKRFI N SNTLF+ S++              +++ +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match: XP_022923619.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTP--------------------------TLDI-DHSRSWS 60
           MN++F  SR LASRLSNS+                             T  + DHSRSWS
Sbjct: 1   MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  SHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE--------------QIRSELKLAF 86
           SH SF EKI+GF S P  GKRFI N SNTLF+ S++              +++ +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match: A0A0A0LVM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 4.7e-137
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60
           MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS
Sbjct: 1   MNRLFSLSRILASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTS 60

Query: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120
           NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF
Sbjct: 61  NTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLTWLDQFSHFNF 120

Query: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180
           FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL
Sbjct: 121 FVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRMQNSKQHKDSQFTMKNPERVL 180

Query: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 236
           DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV
Sbjct: 181 DGLITGSFIIGVDMLRLPENDNQISRSIHLWGTAFPASIHALSEYQKNFHTRNYV 235

[Close]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match: A0A0A0LTI7 (Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 53/128 (41.41%), Postives = 65/128 (50.78%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTPTLDI----------------------------DHSRSW 60
           MN+LF  SR L SRLSNS+   +LD                             DHSRSW
Sbjct: 1   MNKLF--SRKLVSRLSNSYAN-SLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match: A0A6J1E6X7 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431274 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSNSFPTP--------------------------TLDI-DHSRSWS 60
           MN++F  SR LASRLSNS+                             T  + DHSRSWS
Sbjct: 1   MNKIF--SRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWS 60

Query: 61  SHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE--------------QIRSELKLAF 86
           SH SF EKI+GF S P  GKRFI N SNTLF+ S++              +++ +LK  F
Sbjct: 61  SHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGF 120

[Close]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match: A0A5D3BLA0 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001490 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSN----------------------------SFPTPTLDIDHSRSW 60
           MN+LF  SR LASRLSN                            SF T  L  DHSRSW
Sbjct: 1   MNKLF--SRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQ-DHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

[Close]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match: A0A1S3BSX2 (RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-10
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MNRLFSLSRILASRLSN----------------------------SFPTPTLDIDHSRSW 60
           MN+LF  SR LASRLSN                            SF T  L  DHSRSW
Sbjct: 1   MNKLF--SRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQ-DHSRSW 60

Query: 61  SSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKL 86
           SSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK 
Sbjct: 61  SSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKP 120

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64066.19.7e-137100.00hypothetical protein Csa_013348 [Cucumis sativus][more]
XP_004137444.13.7e-1141.41RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetic... [more]
XP_038893963.16.3e-1143.75RHOMBOID-like protein 12, mitochondrial [Benincasa hispida][more]
XP_023519071.18.2e-1142.06RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022923619.11.4e-1040.48RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata][more]
BLAST of CsaV3_1G006110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVM84.7e-137100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039310 PE=4 SV=1[more]
A0A0A0LTI71.8e-1141.41Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE... [more]
A0A6J1E6X76.8e-1140.48RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A5D3BLA05.7e-1040.63RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3BSX25.7e-1040.63RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 ... [more]
BLAST of CsaV3_1G006110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006110.1CsaV3_1G006110.1mRNA