CsaV3_1G006070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G006070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor TCP5
Location	chr1: 3883775 .. 3884753 (+)
RNA-Seq Expression	CsaV3_1G006070
Synteny	CsaV3_1G006070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTTTCCATTTGGCATTACAAAAAATATATTCTCTCTCTCTTCTCTGAAATGGGATTGTTGAAATCATGAAACAACCCATTTGATTGAAAGAAAAAAGATCATATTTTTGGATCAGTCTATAAGCTCTGTTTTGAAGTTTTTTTTTTTTTAAAAAACCATAATATGATCTCAAAATTAAAGGAAGAAGGTGCTCATGATGAAGCAAAACAAAGGAAGGGGAAAATGAAGAAAGCAAGAACGTGTTCAAGACAAGGGCAATTTCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATTGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCACTCCCTTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGATGCTGCTTTCAAGGCCAAAAATGAAGAAACTGATCACACACTTTTGGTTCAAACCAATGACATTAATGGAGTCTGTTCCCATTTTGAACCTCCAACCTTTCCATTCCCCTTCATGGACGATCAGACTAATTCAGCCCCATTTTCCTTCTGACCGTCGACGATACCATCGGAATTCTCTCCTTATCTTCTCAACGGCAGAAAATAAAGGTGTGTTTTAAAATAACTTTCAGACCCATGAAAATTTTGTTGTCTAATTTTTCAACTTTTATAAATTTGTATTAGATGGTTCAACTTTCAAATTTTTTATCTAATTGGTACTTTAAGTAACATTCAACAATAAAAAAGTTGAAAAATTAGTCAATATTTTTTAAACTAAAGAGCAAATAATATACAAAATCAATTTTCTTGTGAATAATTGTAATA

mRNA sequence

ATGATCTCAAAATTAAAGGAAGAAGGTGCTCATGATGAAGCAAAACAAAGGAAGGGGAAAATGAAGAAAGCAAGAACGTGTTCAAGACAAGGGCAATTTCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATTGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCACTCCCTTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGATGCTGCTTTCAAGGCCAAAAATGAAGAAACTGATCACACACTTTTGGTTCAAACCAATGACATTAATGGAGTCTGTTCCCATTTTGAACCTCCAACCTTTCCATTCCCCTTCATGGACGATCAGACTAATTCAGCCCCATTTTCCTTCTGA

Coding sequence (CDS)

ATGATCTCAAAATTAAAGGAAGAAGGTGCTCATGATGAAGCAAAACAAAGGAAGGGGAAAATGAAGAAAGCAAGAACGTGTTCAAGACAAGGGCAATTTCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATTGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCACTCCCTTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGATGCTGCTTTCAAGGCCAAAAATGAAGAAACTGATCACACACTTTTGGTTCAAACCAATGACATTAATGGAGTCTGTTCCCATTTTGAACCTCCAACCTTTCCATTCCCCTTCATGGACGATCAGACTAATTCAGCCCCATTTTCCTTCTGA

Protein sequence

MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF*

Homology

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BLAST of CsaV3_1G006070 vs. NCBI nr
Match: XP_011660343.1 (transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa_014153 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 3.6e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF 180
           SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF
Sbjct: 121 SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF 179

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BLAST of CsaV3_1G006070 vs. NCBI nr
Match: XP_008445912.1 (PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription factor TCP5 [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 166/181 (91.71%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 180
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 180

[Close]

BLAST of CsaV3_1G006070 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66
Identity = 142/200 (71.00%), Postives = 149/200 (74.50%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKL +EG HDEAKQ +GK KKA        FLRGNPRI RVS  FGGKDRHSKVCT+K
Sbjct: 1   MISKLTKEGVHDEAKQMEGKRKKA--------FLRGNPRILRVSSLFGGKDRHSKVCTVK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLS+PTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHS----------DIGDAAFKAKNEETDHTLL-----------VQTNDINGVCSHFE 180
           SILHHS          DI DAA  AKNEETD  LL           VQTN I   C HF+
Sbjct: 121 SILHHSSLFLPQIPHFDIADAAVTAKNEETDQRLLLHKLSSLSALQVQTNAIKENCCHFQ 180

[Close]

BLAST of CsaV3_1G006070 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 138/194 (71.13%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK+EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPL FPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 179
           S LHH DI DAA KAK+EET   LL                +QTN +   C HF+PP+FP
Sbjct: 128 SFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFP 187

[Close]

BLAST of CsaV3_1G006070 vs. NCBI nr
Match: KAG6584403.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-66
Identity = 138/194 (71.13%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK+EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTRF+IDKLPPL FPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 179
           S LHH DI DAA KAK+EET   LL                ++TN +   C HF+PP+FP
Sbjct: 128 SFLHHLDISDAAAKAKHEETGMLLLQKLSPSPNHASFSALQLRTNAMTENCCHFDPPSFP 187

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-32
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 28  SRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLS 87
           SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+PTAIQLYDLQ++LGLS
Sbjct: 42  SRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLS 101

Query: 88  QPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSDIGDAAFKAKNEETDHTLLVQ 147
           QPSKVIDWL++  + ++DKLPPL FP  F+    +  +   G++ F      T  T    
Sbjct: 102 QPSKVIDWLLEAAKDDVDKLPPLQFPHGFN---QMYPNLIFGNSGFGESPSSTTSTTFPG 160

Query: 148 TN 150
           TN
Sbjct: 162 TN 160

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BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 37  NPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLPFPKDF---DPNASILHHS 127
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 4   KLKEEGAHDEAKQRKGK--MKKART--CSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KE+    E +   GK  +KK  T   S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPLP   +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-19
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 39  RIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLID 98
           RI+RV    GGKDRHSKV T KG+RDRR+RLS+ TAIQ YDLQ++LG  QPSK I+WLI+
Sbjct: 43  RIYRVRA-TGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIN 102

Query: 99  VTRFEIDKLPPLPFPKDFDPNA-SILHHSDIGDAA 133
                ID LP L      DP A + + H+   DAA
Sbjct: 103 AASPAIDTLPSL------DPAAFAAIPHAAAADAA 130

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot
Match: Q9C758 (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 51/100 (51.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 11  HDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLS 70
           H E + RK +            +   + RI RVS   GGKDRHSKV T KGLRDRRIRLS
Sbjct: 12  HQEQQSRKLQRFSEDNTGLMRNWNNPSSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLS 71

Query: 71  IPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL 111
           + TAIQ YDLQ++LG  QPSK ++WLI+     I  LP L
Sbjct: 72  VATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLL 111

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF 180
           SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF
Sbjct: 121 SILHHSDIGDAAFKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFSF 179

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86
Identity = 166/181 (91.71%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 180
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 180

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL
Match: A0A1S3BEN2 (transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86
Identity = 166/181 (91.71%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 180
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 180

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 138/194 (71.13%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK+EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPL FPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 179
           S LHH DI DAA KAK+EET   LL                +QTN +   C HF+PP+FP
Sbjct: 128 SFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFP 187

[Close]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.4e-63
Identity = 136/194 (70.10%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MIS+LK EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISRLKPEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTR +IDKLPPL FPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 179
           S L H DI DAA KAK+EET   LL                +QTN +   C HF+PP+FP
Sbjct: 128 SFL-HLDIADAAAKAKHEETGMLLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPSFP 187

[Close]

BLAST of CsaV3_1G006070 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-33
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 28  SRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLS 87
           SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+PTAIQLYDLQ++LGLS
Sbjct: 42  SRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLS 101

Query: 88  QPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSDIGDAAFKAKNEETDHTLLVQ 147
           QPSKVIDWL++  + ++DKLPPL FP  F+    +  +   G++ F      T  T    
Sbjct: 102 QPSKVIDWLLEAAKDDVDKLPPLQFPHGFN---QMYPNLIFGNSGFGESPSSTTSTTFPG 160

Query: 148 TN 150
           TN
Sbjct: 162 TN 160

[Close]

BLAST of CsaV3_1G006070 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 37  NPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLPFPKDF---DPNASILHHS 127
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of CsaV3_1G006070 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 127.9 bits (320), Expect = 8.4e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 4   KLKEEGAHDEAKQRKGK--MKKART--CSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KE+    E +   GK  +KK  T   S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPLP   +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of CsaV3_1G006070 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 127.9 bits (320), Expect = 8.4e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 4   KLKEEGAHDEAKQRKGK--MKKART--CSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KE+    E +   GK  +KK  T   S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPLP   +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of CsaV3_1G006070 vs. TAIR 10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 51/100 (51.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 11  HDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLS 70
           H E + RK +            +   + RI RVS   GGKDRHSKV T KGLRDRRIRLS
Sbjct: 12  HQEQQSRKLQRFSEDNTGLMRNWNNPSSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLS 71

Query: 71  IPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL 111
           + TAIQ YDLQ++LG  QPSK ++WLI+     I  LP L
Sbjct: 72  VATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLL 111

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660343.1	3.6e-99	100.00	transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa...	[more]
XP_008445912.1	1.3e-85	91.71	PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription fa...	[more]
XP_038895251.1	1.8e-66	71.00	transcription factor PCF6 [Benincasa hispida]	[more]
XP_023001048.1	2.3e-66	71.13	transcription factor TCP13-like [Cucurbita maxima]	[more]
KAG6584403.1	3.1e-66	71.13	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsaV3_1G006070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	6.7e-32	57.38	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	1.8e-29	67.74	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	1.2e-28	53.54	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
A2XMN1	3.8e-19	55.79	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]
Q9C758	1.4e-18	51.00	Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1	[more]

BLAST of CsaV3_1G006070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTI3	1.7e-99	100.00	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]
A0A5D3BIQ9	6.4e-86	91.71	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEN2	6.4e-86	91.71	transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1	[more]
A0A6J1KPD9	1.1e-66	71.13	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1E7C6	3.4e-63	70.10	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]

BLAST of CsaV3_1G006070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	4.7e-33	57.38	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	1.3e-30	67.74	TCP domain protein 17	[more]
AT3G02150.1	8.4e-30	53.54	plastid transcription factor 1	[more]
AT3G02150.2	8.4e-30	53.54	plastid transcription factor 1	[more]
AT1G30210.1	1.0e-19	51.00	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 49..119 e-value: 2.8E-23 score: 83.2
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 49..107 score: 25.948359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR31072:SF154	TCP FAMILY TRANSCRIPTION FACTOR	coord: 3..116
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G006070.1	CsaV3_1G006070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity