CsaV3_1G005920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G005920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	chr1: 3796870 .. 3798573 (-)
RNA-Seq Expression	CsaV3_1G005920
Synteny	CsaV3_1G005920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

mRNA sequence

ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

Coding sequence (CDS)

ATGTCGAAGCATAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCACCCAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAGTGGCCTATTCTTCTGAAAAACTATGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCTTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCTAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTTGATCCGAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGAACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGTTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATCATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAATGATATTGGTGCTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATCGCAGAGATGACTACTGCAGTGATGGCAACCTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGACTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGGTGGGGACGTTTTGGTTGCAAGTGCTTTCGTTTCCGACTCTGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGATGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGATACTGCTGAAGAACCTTCTAATGAGGAGATTGTTGAGAATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGCTACACCTGAGACACCAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAATCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

Protein sequence

MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE*

Homology

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BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_011650148.1 (H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypothetical protein Csa_013456 [Cucumis sativus])

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 567/567 (100.00%), Postives = 567/567 (100.00%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480
           DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT
Sbjct: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480

Query: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

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BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_008449192.1 (PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucumis melo])

HSP 1 Score: 1052.7 bits (2721), Expect = 1.1e-303
Identity = 554/567 (97.71%), Postives = 559/567 (98.59%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480
           +SATAKPTAAEESGKDDGGRKRKLDE+TEAAPAKKLKTEEVEEVGKKEKKKKKKDKEK T
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480

Query: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVE SEKKKKKKDKEAKEA TPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_038894523.1 (H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 966.5 bits (2497), Expect = 1.0e-277
Identity = 521/569 (91.56%), Postives = 532/569 (93.50%), Query Frame = 0


Query: 8   SSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPL 67
           SSAV SDEQP K+V DFMIKP S  PPVDTSQWPILLKNYDRLNVRTGHYTPLPSG+LPL
Sbjct: 2   SSAVGSDEQPWKDVVDFMIKPSSVAPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPL 61

Query: 68  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 127
           KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA
Sbjct: 62  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 121

Query: 128 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 187
           TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI
Sbjct: 122 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 181

Query: 188 YESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 247
           YESKLLEYD DKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN
Sbjct: 182 YESKLLEYDVDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 241

Query: 248 MVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 307
           MVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG
Sbjct: 242 MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 301

Query: 308 LLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 367
           LLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK
Sbjct: 302 LLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 361

Query: 368 WGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKP 427
           WGLGPRASMKKKLIGEGKLDKHGKPNE TPQEW+RNLVLPTGGD LVAS F +D+ATAKP
Sbjct: 362 WGLGPRASMKKKLIGEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSLVASVFATDTATAKP 421

Query: 428 TAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEV----EEVGKKE--KKKKKKDKEKDTA 487
           TAAEE+GKD GGRKRKLDEETEAAP KKLK ++     EEVGKKE  KKKKKKDKEK TA
Sbjct: 422 TAAEETGKDGGGRKRKLDEETEAAPGKKLKADKAEDVEEEVGKKEKKKKKKKKDKEKGTA 481

Query: 488 EEPSNEEIVENSEKKKKKKD---KEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADV 547
           EEPS+EE VENSEKKKKKKD   KEAKEA TPET KS+KKKKKKD ESGNDDS + AADV
Sbjct: 482 EEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETEKSKKKKKKKDNESGNDDSHIHAADV 541

Query: 548 QNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           QNGEA  H DGSE KKKKKKKKNKEDAEE
Sbjct: 542 QNGEADGHVDGSE-KKKKKKKKNKEDAEE 569

[Close]

BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_038894282.1 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 947.2 bits (2447), Expect = 6.5e-272
Identity = 514/575 (89.39%), Postives = 528/575 (91.83%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSK+ S S AV SDEQP K+VADFMIKP S+TPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKNRSMSPAVGSDEQPQKDVADFMIKPNSYTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYD DKHLVVFWISCEAGTYVRTLCV LGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDVDKHLVVFWISCEAGTYVRTLCVXLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLG-PRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFV 420
           RDTYPRKWGLG P    +K L+ EGKLDKHGKPN NTPQEW+RNLVLPTGGD LVAS   
Sbjct: 361 RDTYPRKWGLGHPGHQXRKNLLREGKLDKHGKPNANTPQEWLRNLVLPTGGDSLVASILA 420

Query: 421 SDSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEV----EEVGKKE-KKKKKK 480
           +D+ATAKPT AEE+GKDDGGRKRKLDEETEAAP KKLK E+     EEVGKKE KKKKKK
Sbjct: 421 TDTATAKPTTAEETGKDDGGRKRKLDEETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKK 480

Query: 481 DKEKDTAEEPSNEEIVENSEKKKKKKD---KEAKEAATPETPKSEKKKKKKDKESGNDDS 540
           DKEK TAEEPS+EE VENSEKKKKKKD   KEAKEA TPET KS+KKKKKKD ESGNDDS
Sbjct: 481 DKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDS 540

Query: 541 QLPAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAE 567
           QL AADVQNGEA  H DGSEKKKKKK K+ KE  E
Sbjct: 541 QLHAADVQNGEADGHVDGSEKKKKKKDKEAKEAKE 575

[Close]

BLAST of CsaV3_1G005920 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 931.8 bits (2407), Expect = 2.8e-267
Identity = 504/572 (88.11%), Postives = 522/572 (91.26%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQP K+ ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGY PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVAS F +D
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKT------EEVEEVGKKEKKKKKKD 481
           +A       +E+ KD GGRKRKLDE+ EAAP KKLKT      EEV+EVGKKEKKKKKKD
Sbjct: 438 AA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 497

Query: 482 KEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPA 541
           KEK    EP++EE VE SEKKKKKKDKEAKEA TPET KSEKKKKKKDKESGND SQ PA
Sbjct: 498 KEKGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPA 557

Query: 542 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             +QNGEA  H DGSEKKKKKKKK   +DAEE
Sbjct: 558 G-IQNGEADGHVDGSEKKKKKKKK--NKDAEE 582

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 763.1 bits (1969), Expect = 2.3e-219
Identity = 417/571 (73.03%), Postives = 471/571 (82.49%), Query Frame = 0


Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+ YDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATA 425
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A    +A  
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGA---AAAPE 428

Query: 426 KPTAAEESGKDDGGRKRKLDEE--------TEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 485
           +  A  E+G+    RKRK D+         T+ +  K+++ EE EE  K  KKKKKKDKE
Sbjct: 429 EIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKE 488

Query: 486 KDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAAD 545
           ++  EE  +E+     ++KKKKKDK+ +      +PKSEKKKKKK K++        A D
Sbjct: 489 EEKEEEAGSEK-----KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVD 548

Query: 546 VQNGEAHDHDDGSEKKK-KKKKKKNKEDAEE 568
            ++  A +  +  +KKK KKKK K+ ED EE
Sbjct: 549 AEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 3.2e-173
Identity = 326/507 (64.30%), Postives = 395/507 (77.91%), Query Frame = 0


Query: 3   KHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           +   K S    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T HYTPLPS
Sbjct: 13  RKKDKRSLPDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPS 72

Query: 63  GYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G  PLKR +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 73  GANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 132

Query: 123 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV + RLH+A+   +++ARA+ETLTGA+FQRPPLI+AVKRQL
Sbjct: 133 CIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQL 192

Query: 183 RIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSGIL
Sbjct: 193 RVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGIL 252

Query: 243 GEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
           GE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 253 GEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAK 312

Query: 303 LMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRD 362
           +M+PG+LR+E+ I   +E+V++TTKGEAI L IA MTTAV++TCDHGVVAKIKRV+M+RD
Sbjct: 313 IMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERD 372

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDS 422
           TYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +  V     D   +S      
Sbjct: 373 TYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESS---KKE 432

Query: 423 ATAKPTAAEESGKDDGGRKRKLDEETEA-APAKKLKTEEVEEVGKKEKKKKKKDKEKDTA 482
           A   P A  E  +    RKR+ + E EA +P     T   EE+ KKEKKKKKK+K+   A
Sbjct: 433 AAKVPQAVSEVERAP-KRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKEKKAKEA 492

Query: 483 EEPSNE--EIVENSEKKKKKKDKEAKE 507
            E   E  E++  S  KKKKK K+ KE
Sbjct: 493 AESGEEQVEVISESSAKKKKKKKKQKE 510

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 598.6 bits (1542), Expect = 7.4e-170
Identity = 329/557 (59.07%), Postives = 414/557 (74.33%), Query Frame = 0


Query: 5   SSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGY 64
           + K S   S E+  +EV + +IKP+  TP +DTS+WP+LLKNYD+L+VRTGHYTP+P+G+
Sbjct: 3   TDKKSKSKSSEKSTQEV-EQVIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGH 62

Query: 65  LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCI 124
            PLKRP+ EY++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI
Sbjct: 63  SPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCI 122

Query: 125 DRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRI 184
           +RATRLVKSQQGAGKEY+ + RLH A+   +++++A++TLTGA+FQRPP  SAVK++LR+
Sbjct: 123 ERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRV 182

Query: 185 RTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGE 244
           RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRVRSGI+ E
Sbjct: 183 RTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSE 242

Query: 245 KDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLM 304
           K   VTMHDV DAQ+ YDN KDESYLRRVI PLE +LT+YKR+VVKDSA+NAICYGAKLM
Sbjct: 243 KKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLM 302

Query: 305 IPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTY 364
           IPGLLR+E DI + EEVVL+TTKGEAIA+GIA+MTTA MATCDHGVVA IKRV+MDRD Y
Sbjct: 303 IPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVY 362

Query: 365 PRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSAT 424
           P +WGLGP+A +KK++I +GKLDK GKPNE TP +W       TG             AT
Sbjct: 363 PVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTG-----------QVAT 422

Query: 425 AKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDTAEE- 484
              T+  ES   D  +K       +A        + V +  KK+KK+KKKD   D +EE 
Sbjct: 423 TTTTSPVESMNVDTPKKATASVAVKAEVESSEDEKPVPKKEKKDKKEKKKDSSDDESEEE 482

Query: 485 -PSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQNGE 544
             S ++  E  EKK+KK+ K +K+ +  E+ K EKK KK+ K S  D            E
Sbjct: 483 KSSKKDKKEKKEKKEKKEKKSSKDDSDDESSKKEKKDKKRKKSSDKDSD-------SEKE 539

Query: 545 AHDHDDGSEKKKKKKKK 560
           + D  D  +KK+KKK K
Sbjct: 543 SSDKKDKKDKKEKKKSK 539

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 597.4 bits (1539), Expect = 1.7e-169
Identity = 312/508 (61.42%), Postives = 389/508 (76.57%), Query Frame = 0


Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K       E    E+    +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HYTP
Sbjct: 12  KHKKKKDRKPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTP 71

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           LP G  PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 72  LPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 131

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 132 LIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVK 191

Query: 183 RQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 192 RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 251

Query: 243 GILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++ EKD+MVTMHDV+DAQW YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 252 GVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICY 311

Query: 303 GAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PGLLR+E+ I   +E+V++TTKGEAI + IA MTTAV++TCDHG+VAKIKRV+M
Sbjct: 312 GAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIM 371

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV--LPTGGDVLVASA 422
           +RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ +    +G + LV  A
Sbjct: 372 ERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTEA 431

Query: 423 FVSDSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 482
             +    A+              KRK D E+E        ++E   V + ++KKKKKDK+
Sbjct: 432 VQAPQLAAEAVNV---------IKRKRDSESE--------SDETPTVPQLKEKKKKKDKK 491

Query: 483 KDTAEEPSNEEIVENSEKKKKKKDKEAK 506
             T  E   E    +++  KKKK K+ K
Sbjct: 492 PKTVLESGGETGDGDNDTTKKKKKKKVK 502

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot
Match: O14007 (H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cbf5 PE=3 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 4.8e-169
Identity = 308/482 (63.90%), Postives = 381/482 (79.05%), Query Frame = 0


Query: 23  DFMIKPQSFT-PPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILN 82
           DFMIKP++ +   +DT++WP+LLKN+D+L VRTGHYTP+P G  PLKRP+AEY+  G++N
Sbjct: 9   DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68

Query: 83  LDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 142
           LDKPANPSSHEVVAW+K+ILRV+KTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEY
Sbjct: 69  LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128

Query: 143 VCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHL 202
           VCV RLH +V     VA A+ETLTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D +++L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188

Query: 203 VVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWFY 262
            VFW SCEAGTY+RTLCVHLGL+LGVGGHMQELRRVRSG L E D++VTMHDV+DAQW Y
Sbjct: 189 AVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIY 248

Query: 263 DNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEV 322
           DN +DESYLRRVI PLE +L  YKR+VVKDSAVNAICYGAKLMIPGLLR+E  I   EE+
Sbjct: 249 DNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEI 308

Query: 323 VLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI 382
           VL+TTKGEAIA+GIA+M+T  ++TCDHGVVAK+KR +M+RD YPR+WGLGP++  KK L 
Sbjct: 309 VLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLK 368

Query: 383 GEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESGKDDGGRK 442
            EGKLDK+G+PNENTP +W ++ +  +  +  VA      +  A    AE +G +D  +K
Sbjct: 369 KEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVED-SKK 428

Query: 443 RKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDTAEEPSNEEIVENSEKKKKKKD 502
           RK  E +E         ++ +E  KKE+K++KK+ +K+  E+       E  EKK+KKK 
Sbjct: 429 RKSVESSE---------KDEDEAAKKEEKRRKKEAKKEKKEKK------EKKEKKEKKKK 474

Query: 503 KE 504
            E
Sbjct: 489 SE 474

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL
Match: A0A1S3BLH6 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491111 PE=3 SV=1)

HSP 1 Score: 1052.7 bits (2721), Expect = 5.3e-304
Identity = 554/567 (97.71%), Postives = 559/567 (98.59%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480
           +SATAKPTAAEESGKDDGGRKRKLDE+TEAAPAKKLKTEEVEEVGKKEKKKKKKDKEK T
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480

Query: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVE SEKKKKKKDKEAKEA TPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL
Match: A0A0A0LQ86 (PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=3 SV=1)

HSP 1 Score: 977.2 bits (2525), Expect = 2.8e-281
Identity = 516/567 (91.01%), Postives = 516/567 (91.01%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480
           DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEE                 
Sbjct: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEE----------------- 480

Query: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
                                             SEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 ----------------------------------SEKKKKKKDKESGNDDSQLPAADVQN 516

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 516

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 931.8 bits (2407), Expect = 1.4e-267
Identity = 504/572 (88.11%), Postives = 522/572 (91.26%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQP K+ ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGY PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVAS F +D
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKT------EEVEEVGKKEKKKKKKD 481
           +A       +E+ KD GGRKRKLDE+ EAAP KKLKT      EEV+EVGKKEKKKKKKD
Sbjct: 438 AA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 497

Query: 482 KEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPA 541
           KEK    EP++EE VE SEKKKKKKDKEAKEA TPET KSEKKKKKKDKESGND SQ PA
Sbjct: 498 KEKGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPA 557

Query: 542 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             +QNGEA  H DGSEKKKKKKKK   +DAEE
Sbjct: 558 G-IQNGEADGHVDGSEKKKKKKKK--NKDAEE 582

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 927.2 bits (2395), Expect = 3.4e-266
Identity = 508/573 (88.66%), Postives = 518/573 (90.40%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQPPK+VADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNLVLPTGGD LVAS F SD
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFASD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLK------TEEVEEVGKKEKKKKKKD 481
           SAT      +E+ KD GGRKRKLDEETEAAPAKKLK       EEVEE GKKEKKKKKKD
Sbjct: 438 SATV-DEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 497

Query: 482 KEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATP-ETPKSEKKKKKKDKESGNDDSQLP 541
           KEK +  EPS+EE     EKKKKKKDKE KEA TP ET KSEKKKKKKDKESG       
Sbjct: 498 KEKGSG-EPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESG------- 557

Query: 542 AADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             DVQNGEA DH DGSE KKKKKKKKNKEDAEE
Sbjct: 558 VGDVQNGEADDHVDGSE-KKKKKKKKNKEDAEE 580

[Close]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 914.8 bits (2363), Expect = 1.7e-262
Identity = 506/574 (88.15%), Postives = 517/574 (90.07%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQPPK+VADFMIKPQSFTP VDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNLVLPTGGD LVAS F +D
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFATD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLK------TEEVEEVGKKE-KKKKKK 481
           SAT      +E+ KD GGRKRKLDEETEAAPAKKLK       EEVEE GKKE KKKKKK
Sbjct: 438 SATV-DEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKK 497

Query: 482 DKEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATP-ETPKSEKKKKKKDKESGNDDSQL 541
           DKEK +  EPS+EE  E SE KKKKKDKE KEA TP E  KSEKKKKKKDKESG      
Sbjct: 498 DKEKGSG-EPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKKKKKKDKESG------ 557

Query: 542 PAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
              DVQNGEA DH DGSE KKKKKKKKNKEDAEE
Sbjct: 558 -VGDVQNGEADDHVDGSE-KKKKKKKKNKEDAEE 580

[Close]

BLAST of CsaV3_1G005920 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 763.1 bits (1969), Expect = 1.6e-220
Identity = 417/571 (73.03%), Postives = 471/571 (82.49%), Query Frame = 0


Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+ YDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATA 425
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A    +A  
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGA---AAAPE 428

Query: 426 KPTAAEESGKDDGGRKRKLDEE--------TEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 485
           +  A  E+G+    RKRK D+         T+ +  K+++ EE EE  K  KKKKKKDKE
Sbjct: 429 EIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKE 488

Query: 486 KDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAAD 545
           ++  EE  +E+     ++KKKKKDK+ +      +PKSEKKKKKK K++        A D
Sbjct: 489 EEKEEEAGSEK-----KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVD 548

Query: 546 VQNGEAHDHDDGSEKKK-KKKKKKNKEDAEE 568
            ++  A +  +  +KKK KKKK K+ ED EE
Sbjct: 549 AEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of CsaV3_1G005920 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-20
Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 0


Query: 79  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 138
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 139 KEYVCVARLHSAVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 198
           K Y  V RL  A   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 199 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 247
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of CsaV3_1G005920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650148.1	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypoth...	[more]
XP_008449192.1	1.1e-303	97.71	PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucum...	[more]
XP_038894523.1	1.0e-277	91.56	H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida]	[more]
XP_038894282.1	6.5e-272	89.39	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa h...	[more]
XP_022145634.1	2.8e-267	88.11	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]

BLAST of CsaV3_1G005920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	2.3e-219	73.03	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	3.2e-173	64.30	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
Q54T81	7.4e-170	59.07	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
Q9ESX5	1.7e-169	61.42	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]
O14007	4.8e-169	63.90	H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of CsaV3_1G005920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLH6	5.3e-304	97.71	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo O...	[more]
A0A0A0LQ86	2.8e-281	91.01	PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=3 SV...	[more]
A0A6J1CVU2	1.4e-267	88.11	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	3.4e-266	88.66	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	1.7e-262	88.15	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_1G005920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	1.6e-220	73.03	homologue of NAP57	[more]
AT5G14460.1	5.0e-20	31.19	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 285..359 e-value: 3.7E-24 score: 96.2
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 285..357 e-value: 6.8E-21 score: 74.0
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 36..94 e-value: 1.4E-33 score: 127.6
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 37..94 e-value: 5.8E-30 score: 103.1
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 70..276 e-value: 6.4E-181 score: 602.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..567
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..530
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 3..564
None	No IPR available	PROSITE	PS50890	PUA	coord: 284..359 score: 19.007717
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 76..258 e-value: 3.74827E-135 score: 388.543
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 44..369 e-value: 1.4E-160 score: 531.6
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 3..564
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 98..214 e-value: 2.2E-19 score: 70.3
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 281..356 e-value: 2.7E-8 score: 32.0
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 215..281 e-value: 6.7E-23 score: 80.6
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 37..368 e-value: 6.4E-181 score: 602.6
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 284..365
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 37..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G005920.1	CsaV3_1G005920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding