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CsaV3_1G005830 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH* Homology
BLAST of CsaV3_1G005830 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus]) HSP 1 Score: 168.3 bits (425), Expect = 3.0e-38 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida]) HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34 Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33 Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia]) HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31 Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus]) HSP 1 Score: 136.7 bits (343), Expect = 9.6e-29 Identity = 66/88 (75.00%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08 Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07 Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy Swiss-Prot
Match: B5X5U9 (LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07 Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07 Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy Swiss-Prot
Match: Q6DCS1 (LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 8.2e-07 Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31 Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29 Identity = 66/88 (75.00%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy TrEMBL
Match: A0A2J6KBZ0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28 Identity = 62/86 (72.09%), Postives = 79/86 (91.86%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27 Identity = 63/87 (72.41%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of CsaV3_1G005830 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein ) HSP 1 Score: 94.4 bits (233), Expect = 5.1e-20 Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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