CsaV3_1G005510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005510
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCLAVATA3/ESR (CLE)-related protein 45
Locationchr1: 3589463 .. 3590462 (-)
RNA-Seq ExpressionCsaV3_1G005510
SyntenyCsaV3_1G005510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTTTTAAATTCAAACCTGTCAAAGCCCCTCTCAAAAACAGCCTCATATTGCTTCTTTTGCAGGCTTATCATAAGATGAATCTTAGATTTCCCTACACATGTTCTGGGCCCCAAATATGTCTTTTGCTTTTTGGTCATCCTATTCCTATCCCATAAAAGATGGAACTCCTAACTTCTTACTACAATGACCCATCCTAAACTTTGGCTCTGCATATATCTCAGACACATCCTTCTCCTCCCCATTCCCTCCTCATCGAACACAAATACTTTCATCCTTCTTCTGGTTTTAAGTACAAATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGAGAAGAAGAAATGAAGAAGATACAAAGACGTTTCGTACCCGTTTGTTTTCAAAGAAAAATAGAATGTTGGGAAGCCCTGTTGATGAAAAGATGATATCCTAGATAGTTTATCAAAGATTGTTGGCAGCTTTCTTGTAGAATTGAAGATTACATCTACTTGGGTAAGTAGCTTCAGTGATGTACAAACCCAAAGCTCTAACAAACCAAACAGCTTTATTAGATGTAAAAGAAAGAAAGAAAAAAGGTTTCTTCTGCCATACAAATAGGTAGATGCTCTGTAGAAAAATGTATTCCATGTTTTCTATATATATATATATATATATTCTTTTCCATGCTTTATTTGTTAAGTTTTACGTTCATCACTAGAGTTCCCTAAGCAAGAGCTATGCATATCTGACAACAATTTTCCAAGCCC

mRNA sequence

ATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGA

Coding sequence (CDS)

ATGGGGTTCTTGATCCATAGGGTGACCATGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAACCAATGGGTTGACAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGGAAGAATGCTGGCTTTTGCTCCAGCACCTTCCACAGGTTTAGATCCAACCCAGTTGAACAAAAGAAGGGTTCGAAGAGGATCTGATCCTATCCACAACAAATGTTGA

Protein sequence

MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC*
Homology
[Close]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match: KGN64003.1 (hypothetical protein Csa_013092 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 3.1e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
          GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match: KAA0036085.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRV MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
          G MLAFAPAPSTGLDPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match: KAG6584463.1 (hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 10 MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPA 69
          MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIFNSFKFVK+ SVEDDWGR LAFAPA
Sbjct: 1  MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 60

Query: 70 PSTGLDPTQLNKRRVRRGSDPIHNKC 96
          P TG DPT+LNKRR+RRGSDPIHNKC
Sbjct: 61 PLTGFDPTRLNKRRIRRGSDPIHNKC 86

[Close]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match: KAG6607448.1 (E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0 

Query: 7   RVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAF 66
           +V  LLLCI  LALQ +GTNGLTNI LALRWDK +IPI NSFK VK     DDW   LAF
Sbjct: 328 KVANLLLCIGILALQSQGTNGLTNIVLALRWDKLNIPISNSFKLVK-----DDWRGTLAF 387

Query: 67  APAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
           APAPS G DPT+LNKRR+RRGSDPIHNKC
Sbjct: 388 APAPSMGFDPTRLNKRRIRRGSDPIHNKC 411

[Close]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match: KAG7037105.1 (hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-23
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0 

Query: 23 EGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRMLAFAPAPSTGLDPTQLNKR 82
          +GTNGLTNI LALRWDK +IPI NSFK VK     DDW   LAFAPAPS G DPT+LNKR
Sbjct: 19 QGTNGLTNIVLALRWDKLNIPISNSFKLVK-----DDWRGTLAFAPAPSMGFDPTRLNKR 78

Query: 83 RVRRGSDPIHNKC 96
          R+RRGSDPIHNKC
Sbjct: 79 RIRRGSDPIHNKC 86

[Close]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
          GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFLIHRV MLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
          G MLAFAPAPSTGLDPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFL +R  +L +CI FLALQPE  +GL ++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
           + L+ APAPS   DP Q NKR+VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MGFL +R  +L +CI FLALQPE  +GL ++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
           + L+ APAPS   DP Q NKR+VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0 

Query: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60
          MG L ++  +LL+CI FLALQPE  +GL ++DLALRWDK H    NS   VK V+VED  
Sbjct: 1  MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQ 60

Query: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 96
           + L+ APAP+   DP+Q NKR VR+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64003.13.1e-49100.00hypothetical protein Csa_013092 [Cucumis sativus][more]
KAA0036085.11.1e-4694.74CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLA... [more]
KAG6584463.12.1e-3784.88hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607448.11.5e-2773.03E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. soro... [more]
KAG7037105.16.5e-2375.34hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CsaV3_1G005510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQI01.5e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1[more]
A0A5D3BHX95.3e-4794.74CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
M5WYZ52.0e-2257.89Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1[more]
A0A314XM062.0e-2257.89Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311... [more]
A0A2P6P2N12.9e-2156.84Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4... [more]
BLAST of CsaV3_1G005510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 1..95
NoneNo IPR availablePANTHERPTHR36726:SF5CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005510.1CsaV3_1G005510.1mRNA