CsaV3_1G005410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005410
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionzf-C2HC5 domain-containing protein
Locationchr1: 3539645 .. 3539857 (-)
RNA-Seq ExpressionCsaV3_1G005410
SyntenyCsaV3_1G005410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTTTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATGTAAATTTCTTAGCTCGGCTTCCTTTTTTTGTTTTTTTTTTGTGCAATAATCTGAATGATTGA

mRNA sequence

ATGGCGACTTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTTTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATGTAAATTTCTTAGCTCGGCTTCCTTTTTTTGTTTTTTTTTTGTGCAATAATCTGAATGATTGA

Coding sequence (CDS)

ATGGCGACTTCAGGGCAGTGGCTGGAGAAGGCGTTGGATGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCTGGCTTGGTTTCATACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGTATCTTGATGTAAATTTCTTAGCTCGGCTTCCTTTTTTTGTTTTTTTTTTGTGCAATAATCTGAATGATTGA

Protein sequence

MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVNFLARLPFFVFFLCNNLND*
Homology
BLAST of CsaV3_1G005410 vs. NCBI nr
Match: KAE8652507.1 (hypothetical protein Csa_014043 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 7.9e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVNFLARLPFF 60
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVNFLARLPFF
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVNFLARLPFF 60

Query: 61 VFFLCNNLND 71
          VFFLCNNLND
Sbjct: 61 VFFLCNNLND 70

BLAST of CsaV3_1G005410 vs. NCBI nr
Match: KAA0036077.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVN 53
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD N
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDSN 52

BLAST of CsaV3_1G005410 vs. NCBI nr
Match: XP_038894201.1 (uncharacterized protein LOC120082886 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. NCBI nr
Match: XP_023001344.1 (uncharacterized protein LOC111495503 [Cucurbita maxima])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. NCBI nr
Match: XP_022923752.1 (uncharacterized protein LOC111431364 [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDVN 53
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD N
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDSN 52

BLAST of CsaV3_1G005410 vs. ExPASy TrEMBL
Match: A0A6J1KMG5 (uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. ExPASy TrEMBL
Match: A0A0A0LSM8 (zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. ExPASy TrEMBL
Match: A0A6J1E707 (uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC111431364 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. ExPASy TrEMBL
Match: A0A1S3B4L7 (uncharacterized protein C1A6.01c OS=Cucumis melo OX=3656 GN=LOC103485946 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD
Sbjct: 1  MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 50

BLAST of CsaV3_1G005410 vs. TAIR 10
Match: AT3G47610.1 (transcription regulators;zinc ion binding )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 5  GQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLD 51
          GQWLE+AL DLC+K ETG   D+D+ISGLVSYC+LAQP DAKEYLD
Sbjct: 6  GQWLEEALVDLCRKPETGLNFDRDVISGLVSYCDLAQPVDAKEYLD 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652507.17.9e-34100.00hypothetical protein Csa_014043 [Cucumis sativus][more]
KAA0036077.11.5e-2198.08pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_038894201.14.5e-21100.00uncharacterized protein LOC120082886 [Benincasa hispida][more]
XP_023001344.14.5e-21100.00uncharacterized protein LOC111495503 [Cucurbita maxima][more]
XP_022923752.14.5e-21100.00uncharacterized protein LOC111431364 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T3B57.5e-2298.08Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1KMG52.2e-21100.00uncharacterized protein LOC111495503 OS=Cucurbita maxima OX=3661 GN=LOC111495503... [more]
A0A0A0LSM82.2e-21100.00zf-C2HC5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033090 PE... [more]
A0A6J1E7072.2e-21100.00uncharacterized protein LOC111431364 OS=Cucurbita moschata OX=3662 GN=LOC1114313... [more]
A0A1S3B4L72.2e-21100.00uncharacterized protein C1A6.01c OS=Cucumis melo OX=3656 GN=LOC103485946 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT3G47610.11.3e-1576.09transcription regulators;zinc ion binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12963:SF4TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEINcoord: 2..50
IPR039128Activating signal cointegrator 1-likePANTHERPTHR12963THYROID RECEPTOR INTERACTING PROTEIN RELATEDcoord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005410.1CsaV3_1G005410.1mRNA