CsaV3_1G005390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G005390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr1: 3534654 .. 3539494 (-)
RNA-Seq Expression	CsaV3_1G005390
Synteny	CsaV3_1G005390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTATCGCAATTCAAAACTTTGTTAACAAAACGCTGATATCCCCACGTAGATTGGTTTCCTCTGTCGCGGCTGTGGACAATGTGTCCAATTTTTCCTTCACCAAAATTGGAACTTTCGCTCCTTTCAATCCTGTTCAGTTGCTTAATGATTTTGTTAAATTGGGAAAATTCTCTTTGAGAAACACGAAAGTTCTACACGCTAAGTTGCTCCGAGAAACTCTTCGTTTCGATATCTATGTTTCAAATTCTTTGCTACATTTGTACTCCAAGTCTAACGCTATGGACCATGCAATCAAACTTTTTGATACAATCCTATACCCAAATGTTATTTCTTGGAATACCATTATCACGGGTTTGAACAACAATTTCTTACATTTGGACTCGTTGAGAACATTTTGCTGGATGCATTTCCTGGGTTTTAAACCTAATGAGGTAACATGTGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCTCAATGTTTGGCAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTCGATAACGGTTATGTTCGAACCGTAATGATTGATTTATTTGCAAAAGATTCTAAATTTTTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGCGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCGGTAACAAATGGGGAGAATCTGATGGCTTTGGATCTTTTCAACAGAATGTGTAGTAAATTTCTGGAGCCTAATAGTTTCACCTTTTCTAGTGTTCTAACTGCGTGTTCTGCACTTCAAGATCTTGAATTTGGGAAAAAGGTTCAAGGGAGAGTGATTAAATGTGGTGGAGGAGACGTTTTTGTTGAGACAGCCCTTGTTAGTTTGTACGCTAAGTGTGGAGACATGGATGAGGCTGTTAAGACATTCTTGCAGATGCCCATTCGCAATGTAGTCTCGTGGACAGTTATAATGTCTGGCTTTGTGCAAAGTAATGATTATTTAATGGTCATCAAGTTTTTTGAAGATTTGAGAAAAGTAGGAGAGGAAATTAATAGCTACACAGTTACTACCCTGTTAAGGGCATGTGCTAATCCAGCCATGAGAAAAGAGGCAACCCAACTTCACTCCTGGATTCTAAAAGCTGGTTTTTCTTCACATTCAGAGGTGGCGGCTGCTTTAATTATTATGTATTCAAAAATAGGAGCAGTTGATCTTTCATTGATGATTTTTAGAGAGATGGATAACCATAGGAATCTCAGTTCTTGGACAGCCATGATATTGTCGTTTGCAAAAAATAATGATAAAGAGGAAGCAAGTGATTTGTTCCGAAAAATGTTAAGGGAAAGAATGGGACCAGATTCAGTATGTACTTCCGCCCTCTTGAGTTTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACGCACTTAAAACTGAATTAATATTTAATGTTCATGTTGGGAGTTCTCTTCTTACAATGTATTCTAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCCTGGACCTTAATGATTTCCTGCTTCTCAGAACATGGCTATGCAAAAGATGCCATTCAATTATTTAGAGAAATGTTGTTAGAATGTGTACCTGATGGTACGTCTTTGAGTGCAGTCCTAACTGCATGCTACGCCCTTCCTTCTATTCAATTAGGTAGAGAAATTCATGGTTACTCAGTTCGTGTGGGACTTAATGAAAACGTAGCTTTGGGAAGTTCGCTTGTGACTATGTACTCAAAATGTGGTAACCTGGCATTGGCTAGGAGGGTATTTGAAACATTGCCCCAGAAAGATGATATTGTGTGTTCTTCATTGGTTTCAGGATATGCTCAACAAAAGTGCATCAAAGAAGCTCTTTTGCTATTTCGCAGTCTACTAGTGGCTGGCTTAGCCATTGATCCCTTCTCAATCTCGTCCATATTGGGAGCTATTGCACTTCTAAATAGGCCTGCAATTGGGACTCAAATCCATGCACTCATTGTGAAAGTAGGCTTGGAGAAAGATGTATCTGTTGGGAGTTCGCTAGTAATGGTATACTCCAGATGTGGAAGTATAGAAGACTGCTGCAAAGCATTTGGGCAGATTGGAAAGCCCGATTTGATAGGTTGGACATCCATGATTGTCAGTTATGCTCAGCATGGGAAAGGTGCTGAAGCTTTATGTGCCTATGAACTTATGAAGAAAGAAGGATTCAAGCCTGATCCAGTCACCTTTGTTGGGGTTTTGTCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCCTATTTCCACCTCAATTCAATGGTGGAAGACTATGGTATACAACCAGGATATCGACATTATGTATGTATGGTAGATCTTCTTGGCCGGTGTGGGAAACTGAAAGAGGCGGAAGAACTGATTAACCATATGCCTATTGAACCTGATGCTCTCATTTGGGGAACACTTCTAGCTGCTTGTAAAGTACATGGAGATATTGAACTCGGAAAACTAGCAGCAAGAAAGGTGATGGAGTTGAACCCAGGTGATACTGGTGCGTATGTCTCCCTTTCAAACATCTGTGCTGATATGGGATTGTGGGAAGAGGTCCTGAACGTTAGAAGCCTAATGAAGGAAGTTGGAATGACGAAAGAATCTGGTTGGAGCTTTCTGTGAGATGCTATTTTCCGGGAGTTGATGTTAGTTTACTTTTCTTCCCTTTGTTATAGTTTTGTTCTTTTGGTTTGGATATTTTTGGGTCTGGTTCTTTTTATTATCTTTTATATCGTATTTCGACTCATTCCTTTGTATTTTGAGCATTAGTCTCACACATTATAACAATGAAGAGGCTTGTTTAGAGTTTATGAGCTCTTGTACCATAATAGAGGAACGTGAGGTTTCATTTTAAAACAAAGACAATTGATAATGAAAAGAGTAATACGTGTATCTTAATGTAAGTTTCTTCTCTCAACTTCCTTTTTTTCAGTAATCTAAATGATTGATATGTATGTTTTTCGAGGAACTTTACGTTTGGCTTTAGATATTGTTGTTGTTTTAAGAGTATTCGCACATCACTTTGAGAACATTGCAGATTCTTATTTTTATGGATGCTAAATAGTTGCATTTAGATGAGAAAGTGAAATATTGATGATTAGCTAATTCATCTCAATCCACGCTTGAATTCCTAAACGAAGGTTTTCAATAATCCTTGGCTTTCTATGCGTTTTATGGTTTTCCCAAAAGGATAAACTGCTTCACTGGAAGTCAATTTTCTGCACTTGGTTTGATTTAGAATTGTATGATGGATTTAAACGAATTTCATCCCTTGTTTTTTTTTTATGTTTGGTTTTCAAAATCTGGTTAAGGAAAAGTAGATATGGAAGTTGATTATCTGCTTATTTGATTGTATGGCTTCTCTTTTAACATCCCTTGGTTCTCAAGCTTTTCATTTATTTTTCTGCAGAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCGGCTGCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATACCTATGTCAAACCACCCTCCCATGAAGTTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTACCTCTAGTAACGTGGAAAGCCAGGTTTCATCAGATACTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCTTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGATTAGTGAGCAATTGTCTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGTATGTCAATTTGGTGCAGCATCAGTCAATGGATTCTCTAATTTTGTACTACAGATTAGACTGACCATTTTTTTTTTTTTTTTGGTTTAAGGAAAAGGAGCTTTTGAAAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTAATCCTCTTTATTTAACTATGTTTTAGTTCTAACCAACAGCATATGGATAGACCACCGTTCCTTGCCCTCAAATATATCATTGGAAAGTTAGCTTCTCGAGTATCCCTCTCTGCACATTGTTATTGCTTAGGATTTTGGAAGATTTGATCTTTTGATTTTTTCTGGAAATATTGAAATCTCATTCTCCATTTTTCTCTCTTATCTTCTTGTTTTTAGCTTAATGAATTTAATCTTCTGTAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCATGCGGCCAGCAGATGAAAGAGAAGTGAATAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTTGGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATCTTATGATGGAAAGTGTTTGA

mRNA sequence

ATGAATTTTATCGCAATTCAAAACTTTGTTAACAAAACGCTGATATCCCCACGTAGATTGGTTTCCTCTGTCGCGGCTGTGGACAATGTGTCCAATTTTTCCTTCACCAAAATTGGAACTTTCGCTCCTTTCAATCCTGTTCAGTTGCTTAATGATTTTGTTAAATTGGGAAAATTCTCTTTGAGAAACACGAAAGTTCTACACGCTAAGTTGCTCCGAGAAACTCTTCGTTTCGATATCTATGTTTCAAATTCTTTGCTACATTTGTACTCCAAGTCTAACGCTATGGACCATGCAATCAAACTTTTTGATACAATCCTATACCCAAATGTTATTTCTTGGAATACCATTATCACGGGTTTGAACAACAATTTCTTACATTTGGACTCGTTGAGAACATTTTGCTGGATGCATTTCCTGGGTTTTAAACCTAATGAGGTAACATGTGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCTCAATGTTTGGCAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTCGATAACGGTTATGTTCGAACCGTAATGATTGATTTATTTGCAAAAGATTCTAAATTTTTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGCGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCGGTAACAAATGGGGAGAATCTGATGGCTTTGGATCTTTTCAACAGAATGTGTAGTAAATTTCTGGAGCCTAATAGTTTCACCTTTTCTAGTGTTCTAACTGCGTGTTCTGCACTTCAAGATCTTGAATTTGGGAAAAAGGTTCAAGGGAGAGTGATTAAATGTGGTGGAGGAGACGTTTTTGTTGAGACAGCCCTTGTTAGTTTGTACGCTAAGTGTGGAGACATGGATGAGGCTGTTAAGACATTCTTGCAGATGCCCATTCGCAATGTAGTCTCGTGGACAGTTATAATGTCTGGCTTTGTGCAAAGTAATGATTATTTAATGGTCATCAAGTTTTTTGAAGATTTGAGAAAAGTAGGAGAGGAAATTAATAGCTACACAGTTACTACCCTGTTAAGGGCATGTGCTAATCCAGCCATGAGAAAAGAGGCAACCCAACTTCACTCCTGGATTCTAAAAGCTGGTTTTTCTTCACATTCAGAGGTGGCGGCTGCTTTAATTATTATGTATTCAAAAATAGGAGCAGTTGATCTTTCATTGATGATTTTTAGAGAGATGGATAACCATAGGAATCTCAGTTCTTGGACAGCCATGATATTGTCGTTTGCAAAAAATAATGATAAAGAGGAAGCAAGTGATTTGTTCCGAAAAATGTTAAGGGAAAGAATGGGACCAGATTCAGTATGTACTTCCGCCCTCTTGAGTTTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACGCACTTAAAACTGAATTAATATTTAATGTTCATGTTGGGAGTTCTCTTCTTACAATGTATTCTAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCCTGGACCTTAATGATTTCCTGCTTCTCAGAACATGGCTATGCAAAAGATGCCATTCAATTATTTAGAGAAATGTTGTTAGAATGTGTACCTGATGGTACGTCTTTGAGTGCAGTCCTAACTGCATGCTACGCCCTTCCTTCTATTCAATTAGGTAGAGAAATTCATGGTTACTCAGTTCGTGTGGGACTTAATGAAAACGTAGCTTTGGGAAGTTCGCTTGTGACTATGTACTCAAAATGTGGTAACCTGGCATTGGCTAGGAGGGTATTTGAAACATTGCCCCAGAAAGATGATATTGTGTGTTCTTCATTGGTTTCAGGATATGCTCAACAAAAGTGCATCAAAGAAGCTCTTTTGCTATTTCGCAGTCTACTAAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCGGCTGCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATACCTATGTCAAACCACCCTCCCATGAAGTTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTACCTCTAGTAACGTGGAAAGCCAGGTTTCATCAGATACTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCTTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGATTAGTGAGCAATTGTCTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGAAAAGGAGCTTTTGAAAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCATGCGGCCAGCAGATGAAAGAGAAGTGAATAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTTGGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATCTTATGATGGAAAGTGTTTGA

Coding sequence (CDS)

ATGAATTTTATCGCAATTCAAAACTTTGTTAACAAAACGCTGATATCCCCACGTAGATTGGTTTCCTCTGTCGCGGCTGTGGACAATGTGTCCAATTTTTCCTTCACCAAAATTGGAACTTTCGCTCCTTTCAATCCTGTTCAGTTGCTTAATGATTTTGTTAAATTGGGAAAATTCTCTTTGAGAAACACGAAAGTTCTACACGCTAAGTTGCTCCGAGAAACTCTTCGTTTCGATATCTATGTTTCAAATTCTTTGCTACATTTGTACTCCAAGTCTAACGCTATGGACCATGCAATCAAACTTTTTGATACAATCCTATACCCAAATGTTATTTCTTGGAATACCATTATCACGGGTTTGAACAACAATTTCTTACATTTGGACTCGTTGAGAACATTTTGCTGGATGCATTTCCTGGGTTTTAAACCTAATGAGGTAACATGTGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCTCAATGTTTGGCAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTCGATAACGGTTATGTTCGAACCGTAATGATTGATTTATTTGCAAAAGATTCTAAATTTTTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGCGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCGGTAACAAATGGGGAGAATCTGATGGCTTTGGATCTTTTCAACAGAATGTGTAGTAAATTTCTGGAGCCTAATAGTTTCACCTTTTCTAGTGTTCTAACTGCGTGTTCTGCACTTCAAGATCTTGAATTTGGGAAAAAGGTTCAAGGGAGAGTGATTAAATGTGGTGGAGGAGACGTTTTTGTTGAGACAGCCCTTGTTAGTTTGTACGCTAAGTGTGGAGACATGGATGAGGCTGTTAAGACATTCTTGCAGATGCCCATTCGCAATGTAGTCTCGTGGACAGTTATAATGTCTGGCTTTGTGCAAAGTAATGATTATTTAATGGTCATCAAGTTTTTTGAAGATTTGAGAAAAGTAGGAGAGGAAATTAATAGCTACACAGTTACTACCCTGTTAAGGGCATGTGCTAATCCAGCCATGAGAAAAGAGGCAACCCAACTTCACTCCTGGATTCTAAAAGCTGGTTTTTCTTCACATTCAGAGGTGGCGGCTGCTTTAATTATTATGTATTCAAAAATAGGAGCAGTTGATCTTTCATTGATGATTTTTAGAGAGATGGATAACCATAGGAATCTCAGTTCTTGGACAGCCATGATATTGTCGTTTGCAAAAAATAATGATAAAGAGGAAGCAAGTGATTTGTTCCGAAAAATGTTAAGGGAAAGAATGGGACCAGATTCAGTATGTACTTCCGCCCTCTTGAGTTTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACGCACTTAAAACTGAATTAATATTTAATGTTCATGTTGGGAGTTCTCTTCTTACAATGTATTCTAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCCTGGACCTTAATGATTTCCTGCTTCTCAGAACATGGCTATGCAAAAGATGCCATTCAATTATTTAGAGAAATGTTGTTAGAATGTGTACCTGATGGTACGTCTTTGAGTGCAGTCCTAACTGCATGCTACGCCCTTCCTTCTATTCAATTAGGTAGAGAAATTCATGGTTACTCAGTTCGTGTGGGACTTAATGAAAACGTAGCTTTGGGAAGTTCGCTTGTGACTATGTACTCAAAATGTGGTAACCTGGCATTGGCTAGGAGGGTATTTGAAACATTGCCCCAGAAAGATGATATTGTGTGTTCTTCATTGGTTTCAGGATATGCTCAACAAAAGTGCATCAAAGAAGCTCTTTTGCTATTTCGCAGTCTACTAAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCGGCTGCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATACCTATGTCAAACCACCCTCCCATGAAGTTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTACCTCTAGTAACGTGGAAAGCCAGGTTTCATCAGATACTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCTTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGATTAGTGAGCAATTGTCTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGAAAAGGAGCTTTTGAAAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCATGCGGCCAGCAGATGAAAGAGAAGTGAATAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTTGGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATCTTATGATGGAAAGTGTTTGA

Protein sequence

MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFSLRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLLECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVGKKGICLEITGRVQHDSNELKHLMMESV*

Homology

[Close]

BLAST of CsaV3_1G005390 vs. NCBI nr
Match: KAE8652506.1 (hypothetical protein Csa_013256 [Cucumis sativus])

HSP 1 Score: 1934.8 bits (5011), Expect = 0.0e+00
Identity = 987/987 (100.00%), Postives = 987/987 (100.00%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS
Sbjct: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60

Query: 61  LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
           LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG
Sbjct: 61  LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120

Query: 121 LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180
           LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN
Sbjct: 121 LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180

Query: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240
           GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS
Sbjct: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240

Query: 241 KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300
           KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA
Sbjct: 241 KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300

Query: 301 VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360
           VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP
Sbjct: 301 VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360

Query: 361 AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420
           AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM
Sbjct: 361 AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420

Query: 421 ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480
           ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN
Sbjct: 421 ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480

Query: 481 VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540
           VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL
Sbjct: 481 VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540

Query: 541 ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALA 600
           ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALA
Sbjct: 541 ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALA 600

Query: 601 RRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEYLRLRGH 660
           RRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEYLRLRGH
Sbjct: 601 RRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEYLRLRGH 660

Query: 661 SDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVE 720
           SDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVE
Sbjct: 661 SDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVE 720

Query: 721 SQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNC 780
           SQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNC
Sbjct: 721 SQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNC 780

Query: 781 LSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRN 840
           LSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRN
Sbjct: 781 LSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRN 840

Query: 841 SAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKV 900
           SAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKV
Sbjct: 841 SAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKV 900

Query: 901 LLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVG 960
           LLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVG
Sbjct: 901 LLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVG 960

Query: 961 KKGICLEITGRVQHDSNELKHLMMESV 988
           KKGICLEITGRVQHDSNELKHLMMESV
Sbjct: 961 KKGICLEITGRVQHDSNELKHLMMESV 987

[Close]

BLAST of CsaV3_1G005390 vs. NCBI nr
Match: TYJ98884.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1730.7 bits (4481), Expect = 0.0e+00
Identity = 927/1216 (76.23%), Postives = 951/1216 (78.21%), Query Frame = 0


Query: 1    MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
            M+FIAIQ  VNKTL+SPRRLVSSVA VDNVSNFSFTKI TFAPFNPV+LLNDFVKLG FS
Sbjct: 40   MSFIAIQTIVNKTLLSPRRLVSSVATVDNVSNFSFTKIETFAPFNPVRLLNDFVKLGNFS 99

Query: 61   LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
            LRNTKVLHAK LR T R DIYVSNSLLH YSKSNAMDHA+KLFDTIL PNVISWNTIITG
Sbjct: 100  LRNTKVLHAKFLRVTPRIDIYVSNSLLHCYSKSNAMDHALKLFDTILNPNVISWNTIITG 159

Query: 121  LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180
             NNNFLHLDSLR FCWMH+LGFKPNEVTCGSVLSACAAIQA+MFGKQVYSLAVRNGFFDN
Sbjct: 160  FNNNFLHLDSLRIFCWMHYLGFKPNEVTCGSVLSACAAIQATMFGKQVYSLAVRNGFFDN 219

Query: 181  GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240
            GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGE LMALDLFNRMCS
Sbjct: 220  GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGEYLMALDLFNRMCS 279

Query: 241  KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300
            KFLEPNSFTFSSVLTACSALQDLEFGK VQGRVIKCGGGDVFVETALVSLYAKCGDMDEA
Sbjct: 280  KFLEPNSFTFSSVLTACSALQDLEFGKSVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 339

Query: 301  VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360
            VK F QMPIRNVVSWTVIMSGFVQ+NDYLMVIK FEDLRK+GEEINSYTVTTLLRACANP
Sbjct: 340  VKIFFQMPIRNVVSWTVIMSGFVQNNDYLMVIKIFEDLRKIGEEINSYTVTTLLRACANP 399

Query: 361  AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420
             MRKEATQLHSWILKAGFSS +EV AALIIMYSKIGA+DLSLM+FREMDNHRNLSSWTAM
Sbjct: 400  GMRKEATQLHSWILKAGFSSQAEVVAALIIMYSKIGAIDLSLMVFREMDNHRNLSSWTAM 459

Query: 421  ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480
            ILS AKNNDKEEASDLFRKMLRE+M PDSVCTS LLSLTDCITFGRQIHCY LKTELIFN
Sbjct: 460  ILSLAKNNDKEEASDLFRKMLREKMEPDSVCTSTLLSLTDCITFGRQIHCYTLKTELIFN 519

Query: 481  VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540
            V VGSSL TMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHG+A++AIQLFREML 
Sbjct: 520  VSVGSSLFTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGFAREAIQLFREMLF 579

Query: 541  -ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLAL 600
             ECVPDGTSLSAVLTACYALPSIQLGREIHGYS+RVGL+ENV+ GSSLVTMYSKCGNLAL
Sbjct: 580  EECVPDGTSLSAVLTACYALPSIQLGREIHGYSIRVGLSENVSFGSSLVTMYSKCGNLAL 639

Query: 601  ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL-------------------- 660
            ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL                    
Sbjct: 640  ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLVAGLAIDPFSISSILGGIAL 699

Query: 661  ------------------------------------------------------------ 720
                                                                        
Sbjct: 700  LKRPAIGTQIHALIVKVGLEKDVSVGSSLVMVYSRCGSIEDCCKAFGQIGKPDLIGWTSM 759

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 760  IVSYAQHGKGAEALCAYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVEDYG 819

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 820  IQPGCRHYACLVDLLGRCGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAA 879

Query: 841  -----------------------------NIIGQEVGKSVINEYLRLRGHSDLCSKTLDV 900
                                         NIIGQEVGKSVINEYLRLRGHSDLCSKTLDV
Sbjct: 880  RKVMELNPGDTGAYVSLSNICADMGLWEENIIGQEVGKSVINEYLRLRGHSDLCSKTLDV 939

Query: 901  PTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVESQVSSDTRNS 960
            PTSTLHTYVKPPSHE SFGGSKKPVKTPKTISISSKEIEPKKAT+SSNV+SQVS D RNS
Sbjct: 940  PTSTLHTYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKATSSSNVDSQVSLDPRNS 999

Query: 961  SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ 987
            SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ
Sbjct: 1000 SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ 1059

[Close]

BLAST of CsaV3_1G005390 vs. NCBI nr
Match: KAA0036077.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1585.1 bits (4103), Expect = 0.0e+00
Identity = 849/1127 (75.33%), Postives = 870/1127 (77.20%), Query Frame = 0


Query: 90   YSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTC 149
            Y  SNAMDHA+KLFDTIL PNVISWNTIITG NNNFLHLDSLR FCWMH+LGFKPNEVTC
Sbjct: 48   YLDSNAMDHALKLFDTILNPNVISWNTIITGFNNNFLHLDSLRIFCWMHYLGFKPNEVTC 107

Query: 150  GSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC 209
            GSVLSACAAIQA+MFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC
Sbjct: 108  GSVLSACAAIQATMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC 167

Query: 210  ANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKV 269
            ANVVCWNAIVSAAVTNGE LMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGK V
Sbjct: 168  ANVVCWNAIVSAAVTNGEYLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKSV 227

Query: 270  QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYL 329
            QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVK F QMPIRNVVSWTVIMSGFVQ+NDYL
Sbjct: 228  QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKIFFQMPIRNVVSWTVIMSGFVQNNDYL 287

Query: 330  MVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALI 389
            MVIK FEDLRK+GEEINSYTVTTLLRACANP MRKEATQLHSWILKAGFSS +EV AALI
Sbjct: 288  MVIKIFEDLRKIGEEINSYTVTTLLRACANPGMRKEATQLHSWILKAGFSSQAEVVAALI 347

Query: 390  IMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDS 449
            IMYSKIGA+DLSLM+FREMDNHRNLSSWTAMILS AKNNDKEEASDLFRKMLRE+M PDS
Sbjct: 348  IMYSKIGAIDLSLMVFREMDNHRNLSSWTAMILSLAKNNDKEEASDLFRKMLREKMEPDS 407

Query: 450  VCTSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPE 509
            VCTS LLSLTDCITFGRQIHCY LKTELIFNV VGSSL TMYSKCGHLKEAFQVFENMPE
Sbjct: 408  VCTSTLLSLTDCITFGRQIHCYTLKTELIFNVSVGSSLFTMYSKCGHLKEAFQVFENMPE 467

Query: 510  KDNVSWTLMISCFSEHGYAKDAIQLFREMLL-ECVPDGTSLSAVLTACYALPSIQLGREI 569
            KDNVSWTLMISCFSEHG+A++AIQLFREML  ECVPDGTSLSAVLTACYALPSIQLGREI
Sbjct: 468  KDNVSWTLMISCFSEHGFAREAIQLFREMLFEECVPDGTSLSAVLTACYALPSIQLGREI 527

Query: 570  HGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI 629
            HGYS+RVGL+ENV+ GSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI
Sbjct: 528  HGYSIRVGLSENVSFGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI 587

Query: 630  KEALLLFRSLL------------------------------------------------- 689
            KEALLLFRSLL                                                 
Sbjct: 588  KEALLLFRSLLVAGLAIDPFSISSILGGIALLKRPAIGTQIHALIVKVGLEKDVSVGSSL 647

Query: 690  ------------------------------------------------------------ 749
                                                                        
Sbjct: 648  VMVYSRCGSIEDCCKAFGQIGKPDLIGWTSMIVSYAQHGKGAEALCAYELMKKEGFKPDP 707

Query: 750  ------------------------------------------------------------ 809
                                                                        
Sbjct: 708  VTFVGVLSACSHNGLVDEAYFHLNSMVEDYGIQPGCRHYACLVDLLGRCGKLKEAEELIN 767

Query: 810  ------------------------------------------------------------ 869
                                                                        
Sbjct: 768  HMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYVSLSNICADMGLWEE 827

Query: 870  NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPK 929
            NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHE SFGGSKKPVKTPK
Sbjct: 828  NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEGSFGGSKKPVKTPK 887

Query: 930  TISISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI 987
            TISISSKEIEPKKAT+SSNV+SQVS D RNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI
Sbjct: 888  TISISSKEIEPKKATSSSNVDSQVSLDPRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI 947

[Close]

BLAST of CsaV3_1G005390 vs. NCBI nr
Match: XP_008441907.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucumis melo])

HSP 1 Score: 1182.2 bits (3057), Expect = 0.0e+00
Identity = 592/640 (92.50%), Postives = 610/640 (95.31%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           M+FIAIQ  VNKTL+SPRRLVSSVA VDNVSNFSFTKI TFAPFNPV+LLNDFVKLG FS
Sbjct: 1   MSFIAIQTIVNKTLLSPRRLVSSVATVDNVSNFSFTKIETFAPFNPVRLLNDFVKLGNFS 60

Query: 61  LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
           LRNTKVLHAK LR T R DIYVSNSLLH YSKSNAMDHA+KLFDTIL PNVISWNTIITG
Sbjct: 61  LRNTKVLHAKFLRVTPRIDIYVSNSLLHCYSKSNAMDHALKLFDTILNPNVISWNTIITG 120

Query: 121 LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180
            NNNFLHLDSLR FCWMH+LGFKPNEVTCGSVLSACAAIQA+MFGKQVYSLAVRNGFFDN
Sbjct: 121 FNNNFLHLDSLRIFCWMHYLGFKPNEVTCGSVLSACAAIQATMFGKQVYSLAVRNGFFDN 180

Query: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240
           GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGE LMALDLFNRMCS
Sbjct: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGEYLMALDLFNRMCS 240

Query: 241 KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300
           KFLEPNSFTFSSVLTACSALQDLEFGK VQGRVIKCGGGDVFVETALVSLYAKCGDMDEA
Sbjct: 241 KFLEPNSFTFSSVLTACSALQDLEFGKSVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300

Query: 301 VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360
           VK F QMPIRNVVSWTVIMSGFVQ+NDYLMVIK FEDLRK+GEEINSYTVTTLLRACANP
Sbjct: 301 VKIFFQMPIRNVVSWTVIMSGFVQNNDYLMVIKIFEDLRKIGEEINSYTVTTLLRACANP 360

Query: 361 AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420
            MRKEATQLHSWILKAGFSS +EV AALIIMYSKIGA+DLSLM+FREMDNHRNLSSWTAM
Sbjct: 361 GMRKEATQLHSWILKAGFSSQAEVVAALIIMYSKIGAIDLSLMVFREMDNHRNLSSWTAM 420

Query: 421 ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480
           ILS AKNNDKEEASDLFRKMLRE+M PDSVCTS LLSLTDCITFGRQIHCY LKTELIFN
Sbjct: 421 ILSLAKNNDKEEASDLFRKMLREKMEPDSVCTSTLLSLTDCITFGRQIHCYTLKTELIFN 480

Query: 481 VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540
           V VGSSL TMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHG+A++AIQLFREML 
Sbjct: 481 VSVGSSLFTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGFAREAIQLFREMLF 540

Query: 541 -ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLAL 600
            ECVPDGTSLSAVLTACYALPSIQLGREIHGYS+RVGL+ENV+ GSSLVTMYSKCGNLAL
Sbjct: 541 EECVPDGTSLSAVLTACYALPSIQLGREIHGYSIRVGLSENVSFGSSLVTMYSKCGNLAL 600

Query: 601 ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640
           ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL
Sbjct: 601 ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640

[Close]

BLAST of CsaV3_1G005390 vs. NCBI nr
Match: XP_038893557.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa hispida])

HSP 1 Score: 1018.5 bits (2632), Expect = 4.0e-293
Identity = 515/641 (80.34%), Postives = 563/641 (87.83%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           MNFIAIQ FVNKTL+SPR LVSSVA VD+VSNFSFTKI TF   +P+Q LNDFVK  K S
Sbjct: 15  MNFIAIQTFVNKTLLSPRTLVSSVATVDDVSNFSFTKIRTFPHLDPLQFLNDFVKSRKCS 74

Query: 61  LRNTKVLHAKLLR-ETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIIT 120
           LRNTKVLHAKLLR   L  +IYVSNSLL  YSKSNAMDHA+KLFDT+L+PNVISWN II+
Sbjct: 75  LRNTKVLHAKLLRANLLHSNIYVSNSLLDCYSKSNAMDHALKLFDTMLHPNVISWNIIIS 134

Query: 121 GLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFD 180
           G N  FLHLD+ RTFC MHFLGF+P+E+T GSVLSACAAIQA MFGKQVYSLAVRNGFF 
Sbjct: 135 GFNYKFLHLDTCRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFV 194

Query: 181 NGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMC 240
           NGYVR  MIDLFAKDS FLDALRVFHDVDC NVVCWNAIVSAAV NGENLMALDLFN MC
Sbjct: 195 NGYVRAGMIDLFAKDSSFLDALRVFHDVDCENVVCWNAIVSAAVRNGENLMALDLFNTMC 254

Query: 241 SKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDE 300
           S FLEPNSFTFSSVLTAC+AL+DLEFGK+VQGRVIKCGG DVFVETAL+  YAKCGD DE
Sbjct: 255 SGFLEPNSFTFSSVLTACAALEDLEFGKRVQGRVIKCGGEDVFVETALIDSYAKCGDPDE 314

Query: 301 AVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACAN 360
           AVK FL+MPIRNVVSWT I+SGFVQ+NDYLM +KFFED+RK GEEINSYTVT++L ACAN
Sbjct: 315 AVKIFLRMPIRNVVSWTAIISGFVQNNDYLMALKFFEDMRKAGEEINSYTVTSVLTACAN 374

Query: 361 PAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTA 420
           PAM KEATQLHSWILKAGFSSH+ VAAALI MYSKIGA+DLSLM+FREMDN RNLSSWTA
Sbjct: 375 PAMTKEATQLHSWILKAGFSSHAVVAAALINMYSKIGAIDLSLMVFREMDNQRNLSSWTA 434

Query: 421 MILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIF 480
           MI SFA+NNDKE AS+LFRKML+E +GPD+ CTS++LS+TDCITFGR+IHCY LKT LIF
Sbjct: 435 MITSFAQNNDKENASELFRKMLKESVGPDTFCTSSVLSVTDCITFGREIHCYTLKTGLIF 494

Query: 481 NVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREML 540
           +V VGSSL TMYSKCGHLKEAFQVFENM EKDNVSW  MISCF EHGYA +AIQLFREML
Sbjct: 495 DVSVGSSLFTMYSKCGHLKEAFQVFENMLEKDNVSWASMISCFLEHGYATEAIQLFREML 554

Query: 541 L-ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLA 600
             E VPD  +LSAVLTAC  L SIQ+GREIHGYSVR GL ++VA+G+SLV MYSKCGNL 
Sbjct: 555 FEEYVPDHMTLSAVLTACSVLHSIQIGREIHGYSVRAGLGKDVAVGNSLVNMYSKCGNLG 614

Query: 601 LARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640
           LARR+FE LPQKD I CSSL+SGYAQQKC ++A LLFR LL
Sbjct: 615 LARRMFEILPQKDHIACSSLISGYAQQKCNEKAFLLFRDLL 655

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot
Match: Q9CA56 (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 7.6e-162
Identity = 310/685 (45.26%), Postives = 451/685 (65.84%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISP---RRLVSSVAAVDNVSNFSF-TKIGTFAPFNPVQLLNDFVKL 60
           MN +A ++ +N   ISP    RL+SSV    N  +FS      + APFNP +  ND    
Sbjct: 1   MNCLANES-LNSLKISPFSTSRLLSSVTNFRNQLSFSSKDSSSSSAPFNPFRFFNDQSNS 60

Query: 61  GKFSLRNTKVLHAKLLRE-TLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWN 120
              +LR TK+L A LLR   L FD++++ SLL  YS S +M  A KLFDTI  P+V+S N
Sbjct: 61  RLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCN 120

Query: 121 TIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRN 180
            +I+G   + L  +SLR F  MHFLGF+ NE++ GSV+SAC+A+QA +F + V    ++ 
Sbjct: 121 IMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKM 180

Query: 181 GFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLF 240
           G+F    V + +ID+F+K+ +F DA +VF D   ANV CWN I++ A+ N       DLF
Sbjct: 181 GYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLF 240

Query: 241 NRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCG 300
           + MC  F +P+S+T+SSVL AC++L+ L FGK VQ RVIKCG  DVFV TA+V LYAKCG
Sbjct: 241 HEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCG 300

Query: 301 DMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLR 360
            M EA++ F ++P  +VVSWTV++SG+ +SND    ++ F+++R  G EIN+ TVT+++ 
Sbjct: 301 HMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVIS 360

Query: 361 ACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLS 420
           AC  P+M  EA+Q+H+W+ K+GF   S VAAALI MYSK G +DLS  +F ++D+ +  +
Sbjct: 361 ACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQN 420

Query: 421 SWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKT 480
               MI SF+++    +A  LF +ML+E +  D     +LLS+ DC+  G+Q+H Y LK+
Sbjct: 421 IVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKS 480

Query: 481 ELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLF 540
            L+ ++ VGSSL T+YSKCG L+E++++F+ +P KDN  W  MIS F+E+GY ++AI LF
Sbjct: 481 GLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLF 540

Query: 541 REMLLE-CVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKC 600
            EML +   PD ++L+AVLT C + PS+  G+EIHGY++R G+++ + LGS+LV MYSKC
Sbjct: 541 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKC 600

Query: 601 GNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEY 660
           G+L LAR+V++ LP+ D + CSSL+SGY+Q   I++  LLFR ++ + G  +    I+  
Sbjct: 601 GSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMV-MSGFTMDSFAISSI 660

Query: 661 LRLRGHSDLCSKTLDVPTSTLHTYV 680
           L+    SD  S    V     H Y+
Sbjct: 661 LKAAALSDESSLGAQV-----HAYI 678

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot
Match: Q9M1V3 (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 291.2 bits (744), Expect = 4.4e-77
Identity = 179/622 (28.78%), Postives = 336/622 (54.02%), Query Frame = 0


Query: 24  VAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKL--GKFSLRNTKVLHAKLLRETLRFDI- 83
           +A  D V   +F ++      +PV+     ++L   + ++   + LH+++ +    F++ 
Sbjct: 57  LACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD 116

Query: 84  YVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFL 143
           +++  L+ +Y K  ++D A K+FD +      +WNT+I    +N     +L  +  M   
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 144 GFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDA 203
           G      +  ++L ACA ++    G +++SL V+ G+   G++   ++ ++AK+     A
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 204 LRVFHDV-DCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSA 263
            R+F    +  + V WN+I+S+  T+G++L  L+LF  M      PNS+T  S LTAC  
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 296

Query: 264 LQDLEFGKKVQGRVIKCG--GGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTV 323
               + GK++   V+K      +++V  AL+++Y +CG M +A +   QM   +VV+W  
Sbjct: 297 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 356

Query: 324 IMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAG 383
           ++ G+VQ+  Y   ++FF D+   G + +  ++T+++ A    +      +LH++++K G
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416

Query: 384 FSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLF 443
           + S+ +V   LI MYSK          F  M + ++L SWT +I  +A+N+   EA +LF
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRM-HDKDLISWTTVIAGYAQNDCHVEALELF 476

Query: 444 RKMLRERMGPDSVCTSALL---SLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKC 503
           R + ++RM  D +   ++L   S+   +   ++IHC+ L+  L+  V + + L+ +Y KC
Sbjct: 477 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKC 536

Query: 504 GHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREML-LECVPDGTSLSAVL 563
            ++  A +VFE++  KD VSWT MIS  + +G   +A++LFR M+      D  +L  +L
Sbjct: 537 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 596

Query: 564 TACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDI 623
           +A  +L ++  GREIH Y +R G     ++  ++V MY+ CG+L  A+ VF+ + +K  +
Sbjct: 597 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 656

Query: 624 VCSSLVSGYAQQKCIKEALLLF 636
             +S+++ Y    C K A+ LF
Sbjct: 657 QYTSMINAYGMHGCGKAAVELF 676

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 280.8 bits (717), Expect = 6.0e-74
Identity = 162/579 (27.98%), Postives = 311/579 (53.71%), Query Frame = 0


Query: 67  LHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFL 126
           +HA++L + LR    V N L+ LYS++  +D A ++FD +   +  SW  +I+GL+ N  
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 127 HLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTV 186
             +++R FC M+ LG  P      SVLSAC  I++   G+Q++ L ++ GF  + YV   
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328

Query: 187 MIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPN 246
           ++ L+      + A  +F ++   + V +N +++     G    A++LF RM    LEP+
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388

Query: 247 SFTFSSVLTACSALQDLEFGKKVQGRVIKCG-GGDVFVETALVSLYAKCGDMDEAVKTFL 306
           S T +S++ ACSA   L  G+++     K G   +  +E AL++LYAKC D++ A+  FL
Sbjct: 389 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFL 448

Query: 307 QMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKE 366
           +  + NVV W V++  +   +D     + F  ++      N YT  ++L+ C      + 
Sbjct: 449 ETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL 508

Query: 367 ATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFA 426
             Q+HS I+K  F  ++ V + LI MY+K+G +D +  I       +++ SWT MI  + 
Sbjct: 509 GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG-KDVVSWTTMIAGYT 568

Query: 427 KNNDKEEASDLFRKMLRERMGPDSVCTSALLSL---TDCITFGRQIHCYALKTELIFNVH 486
           + N  ++A   FR+ML   +  D V  +  +S       +  G+QIH  A  +    ++ 
Sbjct: 569 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 628

Query: 487 VGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLLEC 546
             ++L+T+YS+CG ++E++  FE     DN++W  ++S F + G  ++A+++F  M  E 
Sbjct: 629 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 688

Query: 547 VPDGT-SLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALAR 606
           + +   +  + + A     +++ G+++H    + G +    + ++L++MY+KCG+++ A 
Sbjct: 689 IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 748

Query: 607 RVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLN 641
           + F  +  K+++  +++++ Y++     EAL  F  +++
Sbjct: 749 KQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.6e-71
Identity = 168/549 (30.60%), Postives = 305/549 (55.56%), Query Frame = 0


Query: 93  SNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSV 152
           S+ + +A  LFD     +  S+ +++ G + +    ++ R F  +H LG + +     SV
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99

Query: 153 LSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANV 212
           L   A +   +FG+Q++   ++ GF D+  V T ++D + K S F D  +VF ++   NV
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 213 VCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGR 272
           V W  ++S    N  N   L LF RM ++  +PNSFTF++ L   +       G +V   
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219

Query: 273 VIKCG-GGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMV 332
           V+K G    + V  +L++LY KCG++ +A   F +  +++VV+W  ++SG+  +   L  
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279

Query: 333 IKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIM 392
           +  F  +R     ++  +  ++++ CAN    +   QLH  ++K GF     +  AL++ 
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339

Query: 393 YSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVC 452
           YSK  A+  +L +F+E+    N+ SWTAMI  F +N+ KEEA DLF +M R+ + P+   
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399

Query: 453 TSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKD 512
            S +L+    I+   ++H   +KT    +  VG++LL  Y K G ++EA +VF  + +KD
Sbjct: 400 YSVILTALPVIS-PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 459

Query: 513 NVSWTLMISCFSEHGYAKDAIQLFREMLLECV-PDGTSLSAVLTACYAL-PSIQLGREIH 572
            V+W+ M++ +++ G  + AI++F E+    + P+  + S++L  C A   S+  G++ H
Sbjct: 460 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 519

Query: 573 GYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIK 632
           G++++  L+ ++ + S+L+TMY+K GN+  A  VF+   +KD +  +S++SGYAQ     
Sbjct: 520 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 579

Query: 633 EALLLFRSL 639
           +AL +F+ +
Sbjct: 580 KALDVFKEM 587

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.8e-70
Identity = 172/591 (29.10%), Postives = 317/591 (53.64%), Query Frame = 0


Query: 61  LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
           L    V+H +++   L  D Y+SN L++LYS++  M +A K+F+ +   N++SW+T+++ 
Sbjct: 60  LHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA 119

Query: 121 LNNNFLHLDSLRTFC-WMHFLGFKPNEVTCGSVLSACAAI--QASMFGKQVYSLAVRNGF 180
            N++ ++ +SL  F  +       PNE    S + AC+ +  +      Q+ S  V++GF
Sbjct: 120 CNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGF 179

Query: 181 FDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNR 240
             + YV T++ID + KD     A  VF  +   + V W  ++S  V  G + ++L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 241 MCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCG-GGDVFVETALVSLYAKCGD 300
           +    + P+ +  S+VL+ACS L  LE GK++   +++ G   D  +   L+  Y KCG 
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 301 MDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRA 360
           +  A K F  MP +N++SWT ++SG+ Q+  +   ++ F  + K G + + Y  +++L +
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

Query: 361 CANPAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSS 420
           CA+       TQ+H++ +KA   + S V  +LI MY+K   +  +  +F ++    ++  
Sbjct: 360 CASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF-DIFAAADVVL 419

Query: 421 WTAMILSFAKNN---DKEEASDLFRKMLRERMGPDSVCTSALLSLTDCIT---FGRQIHC 480
           + AMI  +++     +  EA ++FR M    + P  +   +LL  +  +T     +QIH 
Sbjct: 420 FNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 479

Query: 481 YALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKD 540
              K  L  ++  GS+L+ +YS C  LK++  VF+ M  KD V W  M + + +    ++
Sbjct: 480 LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEE 539

Query: 541 AIQLFREMLLECV-PDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVT 600
           A+ LF E+ L    PD  + + ++TA   L S+QLG+E H   ++ GL  N  + ++L+ 
Sbjct: 540 ALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLD 599

Query: 601 MYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLN 641
           MY+KCG+   A + F++   +D +  +S++S YA     K+AL +   +++
Sbjct: 600 MYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL
Match: A0A5D3BIJ5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00800 PE=4 SV=1)

HSP 1 Score: 1730.7 bits (4481), Expect = 0.0e+00
Identity = 927/1216 (76.23%), Postives = 951/1216 (78.21%), Query Frame = 0


Query: 1    MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
            M+FIAIQ  VNKTL+SPRRLVSSVA VDNVSNFSFTKI TFAPFNPV+LLNDFVKLG FS
Sbjct: 40   MSFIAIQTIVNKTLLSPRRLVSSVATVDNVSNFSFTKIETFAPFNPVRLLNDFVKLGNFS 99

Query: 61   LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
            LRNTKVLHAK LR T R DIYVSNSLLH YSKSNAMDHA+KLFDTIL PNVISWNTIITG
Sbjct: 100  LRNTKVLHAKFLRVTPRIDIYVSNSLLHCYSKSNAMDHALKLFDTILNPNVISWNTIITG 159

Query: 121  LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180
             NNNFLHLDSLR FCWMH+LGFKPNEVTCGSVLSACAAIQA+MFGKQVYSLAVRNGFFDN
Sbjct: 160  FNNNFLHLDSLRIFCWMHYLGFKPNEVTCGSVLSACAAIQATMFGKQVYSLAVRNGFFDN 219

Query: 181  GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240
            GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGE LMALDLFNRMCS
Sbjct: 220  GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGEYLMALDLFNRMCS 279

Query: 241  KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300
            KFLEPNSFTFSSVLTACSALQDLEFGK VQGRVIKCGGGDVFVETALVSLYAKCGDMDEA
Sbjct: 280  KFLEPNSFTFSSVLTACSALQDLEFGKSVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 339

Query: 301  VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360
            VK F QMPIRNVVSWTVIMSGFVQ+NDYLMVIK FEDLRK+GEEINSYTVTTLLRACANP
Sbjct: 340  VKIFFQMPIRNVVSWTVIMSGFVQNNDYLMVIKIFEDLRKIGEEINSYTVTTLLRACANP 399

Query: 361  AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420
             MRKEATQLHSWILKAGFSS +EV AALIIMYSKIGA+DLSLM+FREMDNHRNLSSWTAM
Sbjct: 400  GMRKEATQLHSWILKAGFSSQAEVVAALIIMYSKIGAIDLSLMVFREMDNHRNLSSWTAM 459

Query: 421  ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480
            ILS AKNNDKEEASDLFRKMLRE+M PDSVCTS LLSLTDCITFGRQIHCY LKTELIFN
Sbjct: 460  ILSLAKNNDKEEASDLFRKMLREKMEPDSVCTSTLLSLTDCITFGRQIHCYTLKTELIFN 519

Query: 481  VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540
            V VGSSL TMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHG+A++AIQLFREML 
Sbjct: 520  VSVGSSLFTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGFAREAIQLFREMLF 579

Query: 541  -ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLAL 600
             ECVPDGTSLSAVLTACYALPSIQLGREIHGYS+RVGL+ENV+ GSSLVTMYSKCGNLAL
Sbjct: 580  EECVPDGTSLSAVLTACYALPSIQLGREIHGYSIRVGLSENVSFGSSLVTMYSKCGNLAL 639

Query: 601  ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL-------------------- 660
            ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL                    
Sbjct: 640  ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLVAGLAIDPFSISSILGGIAL 699

Query: 661  ------------------------------------------------------------ 720
                                                                        
Sbjct: 700  LKRPAIGTQIHALIVKVGLEKDVSVGSSLVMVYSRCGSIEDCCKAFGQIGKPDLIGWTSM 759

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 760  IVSYAQHGKGAEALCAYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVEDYG 819

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 820  IQPGCRHYACLVDLLGRCGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAA 879

Query: 841  -----------------------------NIIGQEVGKSVINEYLRLRGHSDLCSKTLDV 900
                                         NIIGQEVGKSVINEYLRLRGHSDLCSKTLDV
Sbjct: 880  RKVMELNPGDTGAYVSLSNICADMGLWEENIIGQEVGKSVINEYLRLRGHSDLCSKTLDV 939

Query: 901  PTSTLHTYVKPPSHEVSFGGSKKPVKTPKTISISSKEIEPKKATTSSNVESQVSSDTRNS 960
            PTSTLHTYVKPPSHE SFGGSKKPVKTPKTISISSKEIEPKKAT+SSNV+SQVS D RNS
Sbjct: 940  PTSTLHTYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKATSSSNVDSQVSLDPRNS 999

Query: 961  SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ 987
            SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ
Sbjct: 1000 SSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQ 1059

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 1585.1 bits (4103), Expect = 0.0e+00
Identity = 849/1127 (75.33%), Postives = 870/1127 (77.20%), Query Frame = 0


Query: 90   YSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTC 149
            Y  SNAMDHA+KLFDTIL PNVISWNTIITG NNNFLHLDSLR FCWMH+LGFKPNEVTC
Sbjct: 48   YLDSNAMDHALKLFDTILNPNVISWNTIITGFNNNFLHLDSLRIFCWMHYLGFKPNEVTC 107

Query: 150  GSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC 209
            GSVLSACAAIQA+MFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC
Sbjct: 108  GSVLSACAAIQATMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDC 167

Query: 210  ANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKV 269
            ANVVCWNAIVSAAVTNGE LMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGK V
Sbjct: 168  ANVVCWNAIVSAAVTNGEYLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKSV 227

Query: 270  QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYL 329
            QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVK F QMPIRNVVSWTVIMSGFVQ+NDYL
Sbjct: 228  QGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKIFFQMPIRNVVSWTVIMSGFVQNNDYL 287

Query: 330  MVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALI 389
            MVIK FEDLRK+GEEINSYTVTTLLRACANP MRKEATQLHSWILKAGFSS +EV AALI
Sbjct: 288  MVIKIFEDLRKIGEEINSYTVTTLLRACANPGMRKEATQLHSWILKAGFSSQAEVVAALI 347

Query: 390  IMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDS 449
            IMYSKIGA+DLSLM+FREMDNHRNLSSWTAMILS AKNNDKEEASDLFRKMLRE+M PDS
Sbjct: 348  IMYSKIGAIDLSLMVFREMDNHRNLSSWTAMILSLAKNNDKEEASDLFRKMLREKMEPDS 407

Query: 450  VCTSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPE 509
            VCTS LLSLTDCITFGRQIHCY LKTELIFNV VGSSL TMYSKCGHLKEAFQVFENMPE
Sbjct: 408  VCTSTLLSLTDCITFGRQIHCYTLKTELIFNVSVGSSLFTMYSKCGHLKEAFQVFENMPE 467

Query: 510  KDNVSWTLMISCFSEHGYAKDAIQLFREMLL-ECVPDGTSLSAVLTACYALPSIQLGREI 569
            KDNVSWTLMISCFSEHG+A++AIQLFREML  ECVPDGTSLSAVLTACYALPSIQLGREI
Sbjct: 468  KDNVSWTLMISCFSEHGFAREAIQLFREMLFEECVPDGTSLSAVLTACYALPSIQLGREI 527

Query: 570  HGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI 629
            HGYS+RVGL+ENV+ GSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI
Sbjct: 528  HGYSIRVGLSENVSFGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCI 587

Query: 630  KEALLLFRSLL------------------------------------------------- 689
            KEALLLFRSLL                                                 
Sbjct: 588  KEALLLFRSLLVAGLAIDPFSISSILGGIALLKRPAIGTQIHALIVKVGLEKDVSVGSSL 647

Query: 690  ------------------------------------------------------------ 749
                                                                        
Sbjct: 648  VMVYSRCGSIEDCCKAFGQIGKPDLIGWTSMIVSYAQHGKGAEALCAYELMKKEGFKPDP 707

Query: 750  ------------------------------------------------------------ 809
                                                                        
Sbjct: 708  VTFVGVLSACSHNGLVDEAYFHLNSMVEDYGIQPGCRHYACLVDLLGRCGKLKEAEELIN 767

Query: 810  ------------------------------------------------------------ 869
                                                                        
Sbjct: 768  HMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYVSLSNICADMGLWEE 827

Query: 870  NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPK 929
            NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHE SFGGSKKPVKTPK
Sbjct: 828  NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEGSFGGSKKPVKTPK 887

Query: 930  TISISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI 987
            TISISSKEIEPKKAT+SSNV+SQVS D RNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI
Sbjct: 888  TISISSKEIEPKKATSSSNVDSQVSLDPRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI 947

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL
Match: A0A1S3B4I2 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485891 PE=4 SV=1)

HSP 1 Score: 1182.2 bits (3057), Expect = 0.0e+00
Identity = 592/640 (92.50%), Postives = 610/640 (95.31%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           M+FIAIQ  VNKTL+SPRRLVSSVA VDNVSNFSFTKI TFAPFNPV+LLNDFVKLG FS
Sbjct: 1   MSFIAIQTIVNKTLLSPRRLVSSVATVDNVSNFSFTKIETFAPFNPVRLLNDFVKLGNFS 60

Query: 61  LRNTKVLHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITG 120
           LRNTKVLHAK LR T R DIYVSNSLLH YSKSNAMDHA+KLFDTIL PNVISWNTIITG
Sbjct: 61  LRNTKVLHAKFLRVTPRIDIYVSNSLLHCYSKSNAMDHALKLFDTILNPNVISWNTIITG 120

Query: 121 LNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDN 180
            NNNFLHLDSLR FCWMH+LGFKPNEVTCGSVLSACAAIQA+MFGKQVYSLAVRNGFFDN
Sbjct: 121 FNNNFLHLDSLRIFCWMHYLGFKPNEVTCGSVLSACAAIQATMFGKQVYSLAVRNGFFDN 180

Query: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCS 240
           GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGE LMALDLFNRMCS
Sbjct: 181 GYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGEYLMALDLFNRMCS 240

Query: 241 KFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300
           KFLEPNSFTFSSVLTACSALQDLEFGK VQGRVIKCGGGDVFVETALVSLYAKCGDMDEA
Sbjct: 241 KFLEPNSFTFSSVLTACSALQDLEFGKSVQGRVIKCGGGDVFVETALVSLYAKCGDMDEA 300

Query: 301 VKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANP 360
           VK F QMPIRNVVSWTVIMSGFVQ+NDYLMVIK FEDLRK+GEEINSYTVTTLLRACANP
Sbjct: 301 VKIFFQMPIRNVVSWTVIMSGFVQNNDYLMVIKIFEDLRKIGEEINSYTVTTLLRACANP 360

Query: 361 AMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAM 420
            MRKEATQLHSWILKAGFSS +EV AALIIMYSKIGA+DLSLM+FREMDNHRNLSSWTAM
Sbjct: 361 GMRKEATQLHSWILKAGFSSQAEVVAALIIMYSKIGAIDLSLMVFREMDNHRNLSSWTAM 420

Query: 421 ILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFN 480
           ILS AKNNDKEEASDLFRKMLRE+M PDSVCTS LLSLTDCITFGRQIHCY LKTELIFN
Sbjct: 421 ILSLAKNNDKEEASDLFRKMLREKMEPDSVCTSTLLSLTDCITFGRQIHCYTLKTELIFN 480

Query: 481 VHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLL 540
           V VGSSL TMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHG+A++AIQLFREML 
Sbjct: 481 VSVGSSLFTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGFAREAIQLFREMLF 540

Query: 541 -ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLAL 600
            ECVPDGTSLSAVLTACYALPSIQLGREIHGYS+RVGL+ENV+ GSSLVTMYSKCGNLAL
Sbjct: 541 EECVPDGTSLSAVLTACYALPSIQLGREIHGYSIRVGLSENVSFGSSLVTMYSKCGNLAL 600

Query: 601 ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640
           ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL
Sbjct: 601 ARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL
Match: A0A6J1KIC5 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495501 PE=4 SV=1)

HSP 1 Score: 968.8 bits (2503), Expect = 1.8e-278
Identity = 480/641 (74.88%), Postives = 555/641 (86.58%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           MNF  I  FVNKTL+S RRL+SSVA VDN S+FSFTKI T+  F+P QLL+D+VK  K S
Sbjct: 1   MNFTGIPTFVNKTLLSQRRLISSVATVDNASSFSFTKIETYPLFDPSQLLSDYVKSRKCS 60

Query: 61  LRNTKVLHAKLLRET-LRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIIT 120
           LR+TKVLHAKLLR T L  +IYVSNSLL  YSKSN++DHA+KLFDT+L+PNVISWN +I+
Sbjct: 61  LRHTKVLHAKLLRATLLHSNIYVSNSLLDCYSKSNSLDHALKLFDTMLHPNVISWNILIS 120

Query: 121 GLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFD 180
             N+NFL+LDS RTFC MHFLGF+P+E+T GSVLSACAAIQA MFGKQVYSLAVRNGFF 
Sbjct: 121 SFNHNFLYLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFV 180

Query: 181 NGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMC 240
           NGYVR  MIDLFAK+S FLDALRVF DVDC NVVCWNAIVSAAV NGEN MALDL+N MC
Sbjct: 181 NGYVRAGMIDLFAKESSFLDALRVFQDVDCENVVCWNAIVSAAVRNGENFMALDLYNTMC 240

Query: 241 SKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDE 300
             FLEPNSFTFSSVLTAC+AL+  EFGK+VQG+VIKCGG DVFVETAL+ LY+KCG+MDE
Sbjct: 241 RGFLEPNSFTFSSVLTACAALEHPEFGKRVQGKVIKCGGEDVFVETALIDLYSKCGEMDE 300

Query: 301 AVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACAN 360
           AVK FL+MPIRNVVSWT I+SGFVQ NDYLM +KFF+D+RK+GEEINSYTVT++L ACAN
Sbjct: 301 AVKIFLRMPIRNVVSWTAIISGFVQKNDYLMALKFFKDMRKLGEEINSYTVTSVLTACAN 360

Query: 361 PAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTA 420
           PAM KEA QLHSWIL+AGFSSH+ V AALI MYSKIGA+DLS+ +F EMDN RNLSSWTA
Sbjct: 361 PAMTKEAIQLHSWILRAGFSSHAVVGAALINMYSKIGAIDLSMTVFGEMDNQRNLSSWTA 420

Query: 421 MILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIF 480
           MI SFA+NNDKE+AS+LF+KMLRE MGPD+ CTS++LS+TDCITFGRQIHC+  KT L+F
Sbjct: 421 MITSFAQNNDKEKASELFQKMLRESMGPDTFCTSSVLSVTDCITFGRQIHCFTHKTGLVF 480

Query: 481 NVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREML 540
            + VGS+L TMYSKCG+L+EAF VF+NMP+KD++SW  M+SCFSEHGYAK+ IQLFREML
Sbjct: 481 GISVGSALFTMYSKCGYLEEAFHVFKNMPKKDHISWASMMSCFSEHGYAKEGIQLFREML 540

Query: 541 L-ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLA 600
             E VPD   L+ VL AC  L SIQ+GREIH YSVR+GL+++VA+G SLVTMYSKCGNL 
Sbjct: 541 FEEYVPDSMILNTVLNACSVLHSIQIGREIHSYSVRLGLDKDVAIGGSLVTMYSKCGNLE 600

Query: 601 LARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640
           +ARRVFETLP+KD+I CSSLVSGYAQ KCIKE +LLF+ LL
Sbjct: 601 MARRVFETLPEKDNIACSSLVSGYAQHKCIKETILLFQDLL 641

[Close]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL
Match: A0A6J1E7L2 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431363 PE=4 SV=1)

HSP 1 Score: 966.8 bits (2498), Expect = 6.7e-278
Identity = 481/641 (75.04%), Postives = 554/641 (86.43%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISPRRLVSSVAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKLGKFS 60
           MNF  I  FVNKTL+S RRL+SSVA VDN S+FSFTKI T+  F+P QLL+D+VK  K S
Sbjct: 1   MNFTGIPTFVNKTLLSHRRLISSVATVDNASSFSFTKIETYPLFDPSQLLSDYVKSRKCS 60

Query: 61  LRNTKVLHAKLLRET-LRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIIT 120
           LRNTKVLHAKLLR T L  +IYVSNSLL  YSKSN++DHA+KLFDT+L+PNVISWN +I+
Sbjct: 61  LRNTKVLHAKLLRATLLHSNIYVSNSLLDCYSKSNSLDHALKLFDTMLHPNVISWNILIS 120

Query: 121 GLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFD 180
             N+NFL+LDS RTFC MHFLGF+P+E+T GSVLSACAAIQA MFGKQVYSLAVRNGFF 
Sbjct: 121 SFNHNFLYLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFV 180

Query: 181 NGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMC 240
           NGYVR  MIDLFAKDS FLDALRVFHD+ C NVVCWNAIVSAAV NGEN MALDL+N MC
Sbjct: 181 NGYVRAGMIDLFAKDSSFLDALRVFHDIHCENVVCWNAIVSAAVRNGENFMALDLYNTMC 240

Query: 241 SKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDE 300
              LEPNSFTFSSVLTAC+AL+  EFGK+VQG+VIKCGG DVFVETAL+ LY+KCG+MDE
Sbjct: 241 RGLLEPNSFTFSSVLTACAALEHPEFGKRVQGKVIKCGGEDVFVETALIDLYSKCGEMDE 300

Query: 301 AVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACAN 360
           AVK FL+MPIRNVVSWT I+SGFVQ NDYLM +KFF+D+RK+GEEINSYTVT++L ACAN
Sbjct: 301 AVKIFLRMPIRNVVSWTAIISGFVQKNDYLMALKFFKDMRKLGEEINSYTVTSVLTACAN 360

Query: 361 PAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTA 420
           PAM KEA QLHSWIL+AG+SSH+ V AALI MYSKIGA+DLS+ +F EMDN RNLSSWTA
Sbjct: 361 PAMTKEAIQLHSWILRAGYSSHAVVGAALINMYSKIGAIDLSMTVFGEMDNQRNLSSWTA 420

Query: 421 MILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIF 480
           MI SFA+NNDKE+AS+LF+KMLRE MGPD+ CTS++LS+TDCITFGRQIHC+  KT LIF
Sbjct: 421 MITSFAQNNDKEKASELFQKMLRESMGPDTFCTSSVLSVTDCITFGRQIHCFTHKTGLIF 480

Query: 481 NVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREML 540
           ++ VGS+L TMYSKCG+L+EAF VF+NM +KDN+SW  M+SCFSEHGYAK+ IQLFREML
Sbjct: 481 DISVGSALFTMYSKCGYLEEAFHVFKNMAKKDNISWASMMSCFSEHGYAKEGIQLFREML 540

Query: 541 L-ECVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLA 600
             E VPD   LS VL AC  L SIQ+GREIH YSVR+GL+++VA+G SLVTMYSKCGNL 
Sbjct: 541 FEEYVPDYMILSTVLNACSVLHSIQIGREIHCYSVRLGLDKDVAIGGSLVTMYSKCGNLE 600

Query: 601 LARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLL 640
           +ARRVFETLP+KD+I CSSLVSGYAQ KCIKE +LLF+ LL
Sbjct: 601 MARRVFETLPEKDNIACSSLVSGYAQHKCIKETILLFQDLL 641

[Close]

BLAST of CsaV3_1G005390 vs. TAIR 10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 572.8 bits (1475), Expect = 5.4e-163
Identity = 310/685 (45.26%), Postives = 451/685 (65.84%), Query Frame = 0


Query: 1   MNFIAIQNFVNKTLISP---RRLVSSVAAVDNVSNFSF-TKIGTFAPFNPVQLLNDFVKL 60
           MN +A ++ +N   ISP    RL+SSV    N  +FS      + APFNP +  ND    
Sbjct: 1   MNCLANES-LNSLKISPFSTSRLLSSVTNFRNQLSFSSKDSSSSSAPFNPFRFFNDQSNS 60

Query: 61  GKFSLRNTKVLHAKLLRE-TLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWN 120
              +LR TK+L A LLR   L FD++++ SLL  YS S +M  A KLFDTI  P+V+S N
Sbjct: 61  RLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCN 120

Query: 121 TIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRN 180
            +I+G   + L  +SLR F  MHFLGF+ NE++ GSV+SAC+A+QA +F + V    ++ 
Sbjct: 121 IMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKM 180

Query: 181 GFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLF 240
           G+F    V + +ID+F+K+ +F DA +VF D   ANV CWN I++ A+ N       DLF
Sbjct: 181 GYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLF 240

Query: 241 NRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCG 300
           + MC  F +P+S+T+SSVL AC++L+ L FGK VQ RVIKCG  DVFV TA+V LYAKCG
Sbjct: 241 HEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCG 300

Query: 301 DMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLR 360
            M EA++ F ++P  +VVSWTV++SG+ +SND    ++ F+++R  G EIN+ TVT+++ 
Sbjct: 301 HMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVIS 360

Query: 361 ACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLS 420
           AC  P+M  EA+Q+H+W+ K+GF   S VAAALI MYSK G +DLS  +F ++D+ +  +
Sbjct: 361 ACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQN 420

Query: 421 SWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKT 480
               MI SF+++    +A  LF +ML+E +  D     +LLS+ DC+  G+Q+H Y LK+
Sbjct: 421 IVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKS 480

Query: 481 ELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLF 540
            L+ ++ VGSSL T+YSKCG L+E++++F+ +P KDN  W  MIS F+E+GY ++AI LF
Sbjct: 481 GLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLF 540

Query: 541 REMLLE-CVPDGTSLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKC 600
            EML +   PD ++L+AVLT C + PS+  G+EIHGY++R G+++ + LGS+LV MYSKC
Sbjct: 541 SEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKC 600

Query: 601 GNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLNIIGQEVGKSVINEY 660
           G+L LAR+V++ LP+ D + CSSL+SGY+Q   I++  LLFR ++ + G  +    I+  
Sbjct: 601 GSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMV-MSGFTMDSFAISSI 660

Query: 661 LRLRGHSDLCSKTLDVPTSTLHTYV 680
           L+    SD  S    V     H Y+
Sbjct: 661 LKAAALSDESSLGAQV-----HAYI 678

[Close]

BLAST of CsaV3_1G005390 vs. TAIR 10
Match: AT3G47610.1 (transcription regulators;zinc ion binding )

HSP 1 Score: 392.1 bits (1006), Expect = 1.3e-108
Identity = 213/349 (61.03%), Postives = 259/349 (74.21%), Query Frame = 0


Query: 640 NIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPK 699
           NIIG+E GKS+I EYL+ RG+ D  S         L  YVKP     +  G+KKP KTPK
Sbjct: 52  NIIGKE-GKSIIAEYLQRRGYKDPSSHVAASSGPELQMYVKPKVDNGASSGTKKPFKTPK 111

Query: 700 TISISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSI 759
             + S+++    K T  +                   Q + +KKK  KV+SLAEAAKGSI
Sbjct: 112 EGTSSNQQAGTGKLTAPA------------------QQVNPKKKKGGKVISLAEAAKGSI 171

Query: 760 VFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTP 819
           VFQQGKPC+CQARRH LVSNCLSCGKIVCEQEGEGPCSFCG+LVL+EGSTYAG++ G+TP
Sbjct: 172 VFQQGKPCACQARRHHLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSTYAGLEVGYTP 231

Query: 820 LSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIE 879
           +SDA+ AAEAYAKRLVEYDRNSAART+VIDDQSDYY+ E ++WLS EEKEL++KK+EEIE
Sbjct: 232 VSDADVAAEAYAKRLVEYDRNSAARTTVIDDQSDYYESESSTWLSAEEKELVRKKREEIE 291

Query: 880 EAERAKRNKVVVTFDLVGRKVLLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPV 939
           EAER K++KVV+TFDL+GRKVLLNEDD SELES   I+ P + + VNRIKPNP+ ++ P+
Sbjct: 292 EAERVKKSKVVMTFDLIGRKVLLNEDDISELESGNRILGPPETKNVNRIKPNPTARLVPI 351

Query: 940 FLDPGPREK---STKDRNSNKAVGKKGICLEITGRVQHDSNELKHLMME 986
           FLDPGP EK   ST  +  NK   + G+CLEITGRVQHD +ELK+L  +
Sbjct: 352 FLDPGPTEKKPNSTTTKKDNKK-NRNGLCLEITGRVQHDRSELKYLQAD 380

[Close]

BLAST of CsaV3_1G005390 vs. TAIR 10
Match: AT3G63370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 3.1e-78
Identity = 179/622 (28.78%), Postives = 336/622 (54.02%), Query Frame = 0


Query: 24  VAAVDNVSNFSFTKIGTFAPFNPVQLLNDFVKL--GKFSLRNTKVLHAKLLRETLRFDI- 83
           +A  D V   +F ++      +PV+     ++L   + ++   + LH+++ +    F++ 
Sbjct: 57  LACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD 116

Query: 84  YVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFL 143
           +++  L+ +Y K  ++D A K+FD +      +WNT+I    +N     +L  +  M   
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 144 GFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDA 203
           G      +  ++L ACA ++    G +++SL V+ G+   G++   ++ ++AK+     A
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 204 LRVFHDV-DCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSA 263
            R+F    +  + V WN+I+S+  T+G++L  L+LF  M      PNS+T  S LTAC  
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 296

Query: 264 LQDLEFGKKVQGRVIKCG--GGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTV 323
               + GK++   V+K      +++V  AL+++Y +CG M +A +   QM   +VV+W  
Sbjct: 297 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 356

Query: 324 IMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAG 383
           ++ G+VQ+  Y   ++FF D+   G + +  ++T+++ A    +      +LH++++K G
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416

Query: 384 FSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLF 443
           + S+ +V   LI MYSK          F  M + ++L SWT +I  +A+N+   EA +LF
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRM-HDKDLISWTTVIAGYAQNDCHVEALELF 476

Query: 444 RKMLRERMGPDSVCTSALL---SLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKC 503
           R + ++RM  D +   ++L   S+   +   ++IHC+ L+  L+  V + + L+ +Y KC
Sbjct: 477 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKC 536

Query: 504 GHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREML-LECVPDGTSLSAVL 563
            ++  A +VFE++  KD VSWT MIS  + +G   +A++LFR M+      D  +L  +L
Sbjct: 537 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 596

Query: 564 TACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDI 623
           +A  +L ++  GREIH Y +R G     ++  ++V MY+ CG+L  A+ VF+ + +K  +
Sbjct: 597 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 656

Query: 624 VCSSLVSGYAQQKCIKEALLLF 636
             +S+++ Y    C K A+ LF
Sbjct: 657 QYTSMINAYGMHGCGKAAVELF 676

[Close]

BLAST of CsaV3_1G005390 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 280.8 bits (717), Expect = 4.2e-75
Identity = 162/579 (27.98%), Postives = 311/579 (53.71%), Query Frame = 0


Query: 67  LHAKLLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGLNNNFL 126
           +HA++L + LR    V N L+ LYS++  +D A ++FD +   +  SW  +I+GL+ N  
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 127 HLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTV 186
             +++R FC M+ LG  P      SVLSAC  I++   G+Q++ L ++ GF  + YV   
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328

Query: 187 MIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPN 246
           ++ L+      + A  +F ++   + V +N +++     G    A++LF RM    LEP+
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388

Query: 247 SFTFSSVLTACSALQDLEFGKKVQGRVIKCG-GGDVFVETALVSLYAKCGDMDEAVKTFL 306
           S T +S++ ACSA   L  G+++     K G   +  +E AL++LYAKC D++ A+  FL
Sbjct: 389 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFL 448

Query: 307 QMPIRNVVSWTVIMSGFVQSNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKE 366
           +  + NVV W V++  +   +D     + F  ++      N YT  ++L+ C      + 
Sbjct: 449 ETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL 508

Query: 367 ATQLHSWILKAGFSSHSEVAAALIIMYSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFA 426
             Q+HS I+K  F  ++ V + LI MY+K+G +D +  I       +++ SWT MI  + 
Sbjct: 509 GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG-KDVVSWTTMIAGYT 568

Query: 427 KNNDKEEASDLFRKMLRERMGPDSVCTSALLSL---TDCITFGRQIHCYALKTELIFNVH 486
           + N  ++A   FR+ML   +  D V  +  +S       +  G+QIH  A  +    ++ 
Sbjct: 569 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 628

Query: 487 VGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLLEC 546
             ++L+T+YS+CG ++E++  FE     DN++W  ++S F + G  ++A+++F  M  E 
Sbjct: 629 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 688

Query: 547 VPDGT-SLSAVLTACYALPSIQLGREIHGYSVRVGLNENVALGSSLVTMYSKCGNLALAR 606
           + +   +  + + A     +++ G+++H    + G +    + ++L++MY+KCG+++ A 
Sbjct: 689 IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 748

Query: 607 RVFETLPQKDDIVCSSLVSGYAQQKCIKEALLLFRSLLN 641
           + F  +  K+++  +++++ Y++     EAL  F  +++
Sbjct: 749 KQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786

[Close]

BLAST of CsaV3_1G005390 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 271.6 bits (693), Expect = 2.6e-72
Identity = 168/549 (30.60%), Postives = 305/549 (55.56%), Query Frame = 0


Query: 93  SNAMDHAIKLFDTILYPNVISWNTIITGLNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSV 152
           S+ + +A  LFD     +  S+ +++ G + +    ++ R F  +H LG + +     SV
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99

Query: 153 LSACAAIQASMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANV 212
           L   A +   +FG+Q++   ++ GF D+  V T ++D + K S F D  +VF ++   NV
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 213 VCWNAIVSAAVTNGENLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGR 272
           V W  ++S    N  N   L LF RM ++  +PNSFTF++ L   +       G +V   
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219

Query: 273 VIKCG-GGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIMSGFVQSNDYLMV 332
           V+K G    + V  +L++LY KCG++ +A   F +  +++VV+W  ++SG+  +   L  
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279

Query: 333 IKFFEDLRKVGEEINSYTVTTLLRACANPAMRKEATQLHSWILKAGFSSHSEVAAALIIM 392
           +  F  +R     ++  +  ++++ CAN    +   QLH  ++K GF     +  AL++ 
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339

Query: 393 YSKIGAVDLSLMIFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVC 452
           YSK  A+  +L +F+E+    N+ SWTAMI  F +N+ KEEA DLF +M R+ + P+   
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399

Query: 453 TSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKD 512
            S +L+    I+   ++H   +KT    +  VG++LL  Y K G ++EA +VF  + +KD
Sbjct: 400 YSVILTALPVIS-PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 459

Query: 513 NVSWTLMISCFSEHGYAKDAIQLFREMLLECV-PDGTSLSAVLTACYAL-PSIQLGREIH 572
            V+W+ M++ +++ G  + AI++F E+    + P+  + S++L  C A   S+  G++ H
Sbjct: 460 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 519

Query: 573 GYSVRVGLNENVALGSSLVTMYSKCGNLALARRVFETLPQKDDIVCSSLVSGYAQQKCIK 632
           G++++  L+ ++ + S+L+TMY+K GN+  A  VF+   +KD +  +S++SGYAQ     
Sbjct: 520 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 579

Query: 633 EALLLFRSL 639
           +AL +F+ +
Sbjct: 580 KALDVFKEM 587

The following BLAST results are available for this feature:

BLAST of CsaV3_1G005390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652506.1	0.0e+00	100.00	hypothetical protein Csa_013256 [Cucumis sativus]	[more]
TYJ98884.1	0.0e+00	76.23	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0036077.1	0.0e+00	75.33	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008441907.1	0.0e+00	92.50	PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic ...	[more]
XP_038893557.1	4.0e-293	80.34	pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa ...	[more]

BLAST of CsaV3_1G005390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA56	7.6e-162	45.26	Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop...	[more]
Q9M1V3	4.4e-77	28.78	Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop...	[more]
Q9SVP7	6.0e-74	27.98	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX...	[more]
Q9ZUW3	3.6e-71	30.60	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]
Q9SVA5	1.8e-70	29.10	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_1G005390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIJ5	0.0e+00	76.23	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7T3B5	0.0e+00	75.33	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B4I2	0.0e+00	92.50	pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucumis ...	[more]
A0A6J1KIC5	1.8e-278	74.88	pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbit...	[more]
A0A6J1E7L2	6.7e-278	75.04	pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbit...	[more]

BLAST of CsaV3_1G005390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74600.1	5.4e-163	45.26	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G47610.1	1.3e-108	61.03	transcription regulators;zinc ion binding	[more]
AT3G63370.1	3.1e-78	28.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G13650.1	4.2e-75	27.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G27610.1	2.6e-72	30.60	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 864..891
None	No IPR available	COILS	Coil	Coil	coord: 820..840
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 681..745
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 934..958
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 944..958
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 697..745
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 61..538 coord: 204..638
None	No IPR available	PANTHER	PTHR47929:SF9	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 61..538 coord: 204..638
IPR009349	Zinc finger, C2HC5-type	PFAM	PF06221	zf-C2HC5	coord: 765..805 e-value: 2.1E-13 score: 50.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 26..164 e-value: 1.2E-14 score: 56.0 coord: 279..363 e-value: 5.9E-17 score: 63.6 coord: 564..654 e-value: 2.3E-10 score: 42.1 coord: 468..563 e-value: 1.8E-19 score: 71.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 165..278 e-value: 2.2E-14 score: 55.6 coord: 364..460 e-value: 1.8E-14 score: 55.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 416..448 e-value: 5.5E-5 score: 21.1 coord: 513..539 e-value: 1.2E-4 score: 20.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 513..539 e-value: 9.5E-6 score: 25.5 coord: 416..443 e-value: 2.9E-5 score: 24.0 coord: 485..510 e-value: 0.0022 score: 18.1 coord: 84..104 e-value: 0.49 score: 10.7 coord: 614..638 e-value: 0.11 score: 12.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 310..359 e-value: 6.3E-10 score: 39.1 coord: 211..257 e-value: 1.1E-10 score: 41.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 511..545 score: 9.613118
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 280..314 score: 9.196589
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 211..245 score: 8.823904
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 480..510 score: 8.834866
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 413..447 score: 10.818861

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G005390.1	CsaV3_1G005390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding