![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CsaV3_1G005320 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGCTAACTCAATTTTGATCGGAGAGATAGAAGATCGAAAGTTGGGAGATTATATGCTTAAAACTAGTTTGTTCAAAGAAAGATAGGAATGAGGAGGGAGAGTCTTGAGAGATGTGATGATTGAATGGTAATGGTAATGAGCAGAGTAGTGTTCTAAATGGTTTATGATAGTTAATATGTTGAGCCATTCACTCCAATCTCCCAAACACTCTCCCTTTAGATTCGTTGCCATCTTTTTACTGCATCAATGATTCAAAAACTCTGTCTCTGAAAAAATGGTGGGATCGTCTTGTTGTGTCCACACCTTATCACTTGCAGGTTTTTCTCACCTGACTCTGTCCCCACTCTGTTTCCACTTCATTAACCAAATCAATTCTCTTAATCCGAATCGCTTCCTTCTCTGCTACCAGAGGACACCGTTATACTTTCAAGCTTCAACACGTTATTTTCTAAAGCTACGTGGACCCTTTTCAGTTTTCACGACAAATTTCTTTGCTTATTCTCTTCCTAACATCTCTCTGTCAGTTTCAGTACGATGATGATTCACTTCATTTAACCAATCTTCAATTCTATACCCTTTTTCATTCTGCTTCTCTTCTTAACTATCCTATCTTTGTATGTGTTACTATCTGATTAGACTTGTGATTTTGTTAATTACACCTTTTGATTTCCCTTCCACCGACTCCAACTTTCGATGCTATCCCTTGGAATTGATTCCTCTGCTTTTTTATCTTTTCTTACTTTCGATGACACTTGTTACTCTTTTTCGTTTAACACGCACACAGCTGCACCGCTTTTCGAGCTTGACATCTAGAGGAAGGATAAGAAAAGATAAAGTGAAGGATTTTGGAAGAACGAGCTCTTTTTCTCTTCGTTCTTTCGTTTTGGGATTCTGGGTTTTGAAGATAATTGATACATTGACCCAAAGATGGGATCTGGGGCTGGAAATTTCTTTAAAGTTGTTCTTAAAAACTTCGATGTTCTTGCTGGGTATCTCACCGACTCTCTATGTTGCTTTTTTTAGTTTGCTTTTTTAAAAGGAAAAAAAAAATCCCATAATGGGGAATTAGTTTGTTAATGCTCCCATATATTGATACATTGTCATTATTTGATTTGCAGCCCTGTTGTCGGTCTTGTCTATCCTCTGTAAGTTTCTTTTTCACTCTAATCCATCAAAATTTGTTGGTCAATTGGGCTGAATTCAATCGTTTTGAATATTGGTTTTGGGCTTTTTTTCATTTTTTTTTCTTTTTCTTGGTAGATATGCCTCAATCAGAGCCATAGAGACCAAATCTCAAGTCGATGATCAGCAATGGCTTACTTATTGGGTTTTACACTCCATGATTACTCTCTTCGAGCTGACCTTTGCCAAGGTTCTTGAATGGTAGGCGTTAATGGGGTTACTTCTTTTCCAATTGCTTTGAATTTGATCTGTTAACAGAAACTTTTCCATGGCAGGATTCCAATATGGCCTTATTTGAAGCTGGTTGTGCTGTGTTGGTTATCAGGCTTTAATGGAGCTTCGTATGTGTACGAGCATTACTTAAGACCTCTAATGGTGAACCAACAGAGAGTTAACGTTTGGTATGTTCCTAAAGGGAAGGATCCTTTGAACAAACGTGAGGACATTATCACTGCTGCGGAGAAGTACATTCAGGAACATGGAACTGGTGAACTTCAATACATGCTCGACAATGTGAGGATGAATATTTTTGTTACTTTGAGCTTCTCCCTTCAATTCACAAAGCTTATTTATTATGTTCTACTTCTACAGGCCGAAGTGCACAGGAGAAATAGTAGCAGTTATTATGGTTATGCAGATGACTATGGATATTGAAACTGATGCCACTCGAATTCAACTGACTACTTCGGATTAGAATAAGAGTGGAAATCAAACAAAGCTGAAAGTTTTCTCCTTTTTTGTGTTTTTTCTTTTTTGGGTCTGTGAAAAACTAGTCTCTGTTCATTGTTGTAGATGTTTTATCCAAATTTGTTCTGTTTTTTGGTCGTCTTTTTGTAATATCAAAGCAAATTCAAATAAACATGAAGAGAAAGTGTAGTCATTTATCGAAGTTCACTCAACACAATTAGATACATTAAGAAACTGCAACATTTTCTCAAACAATAAAAAAGAATTTAAGGAAAGCTGATGTTGAGCATCTGTTGTTATTACAAAACCCCAACGGTTGATATCCAGTTAACAATCTTGATCATTAGTACAGCACAGACAAGGATTATTTAGGTCTAAGAATTAAGAATTCTATGCATTAGATATCATTAAGTGATGGATGATGATGATGATGAGTGATAGCTGTGGAATTGCTTGGCAATGCTCCAGCTTTTTCTTGTTCAATCTACAGGCTCAAATTTGTTTGAAACTTCGAATTTACTCTTCATTTTCATTTTCAACGTCACTCCTATTCTGTGACTGGTATATGTACTCTTGCGCCTCAGTTAGTGCTGATTCCTTCGCGTCTGCT ATGGGATCTGGGGCTGGAAATTTCTTTAAAGTTGTTCTTAAAAACTTCGATGTTCTTGCTGGCCCTGTTGTCGGTCTTGTCTATCCTCTATATGCCTCAATCAGAGCCATAGAGACCAAATCTCAAGTCGATGATCAGCAATGGCTTACTTATTGGGTTTTACACTCCATGATTACTCTCTTCGAGCTGACCTTTGCCAAGGTTCTTGAATGGATTCCAATATGGCCTTATTTGAAGCTGGTTGTGCTGTGTTGGTTATCAGGCTTTAATGGAGCTTCGTATGTGTACGAGCATTACTTAAGACCTCTAATGGTGAACCAACAGAGAGTTAACGTTTGGTATGTTCCTAAAGGGAAGGATCCTTTGAACAAACGTGAGGACATTATCACTGCTGCGGAGAAGTACATTCAGGAACATGGAACTGGTGAACTTCAATACATGCTCGACAATGCCGAAGTGCACAGGAGAAATAGTAGCAGTTATTATGGTTATGCAGATGACTATGGATATTGA ATGGGATCTGGGGCTGGAAATTTCTTTAAAGTTGTTCTTAAAAACTTCGATGTTCTTGCTGGCCCTGTTGTCGGTCTTGTCTATCCTCTATATGCCTCAATCAGAGCCATAGAGACCAAATCTCAAGTCGATGATCAGCAATGGCTTACTTATTGGGTTTTACACTCCATGATTACTCTCTTCGAGCTGACCTTTGCCAAGGTTCTTGAATGGATTCCAATATGGCCTTATTTGAAGCTGGTTGTGCTGTGTTGGTTATCAGGCTTTAATGGAGCTTCGTATGTGTACGAGCATTACTTAAGACCTCTAATGGTGAACCAACAGAGAGTTAACGTTTGGTATGTTCCTAAAGGGAAGGATCCTTTGAACAAACGTGAGGACATTATCACTGCTGCGGAGAAGTACATTCAGGAACATGGAACTGGTGAACTTCAATACATGCTCGACAATGCCGAAGTGCACAGGAGAAATAGTAGCAGTTATTATGGTTATGCAGATGACTATGGATATTGA MGSGAGNFFKVVLKNFDVLAGPVVGLVYPLYASIRAIETKSQVDDQQWLTYWVLHSMITLFELTFAKVLEWIPIWPYLKLVVLCWLSGFNGASYVYEHYLRPLMVNQQRVNVWYVPKGKDPLNKREDIITAAEKYIQEHGTGELQYMLDNAEVHRRNSSSYYGYADDYGY* Homology
BLAST of CsaV3_1G005320 vs. NCBI nr
Match: XP_004137404.1 (HVA22-like protein a [Cucumis sativus] >KGN63983.1 hypothetical protein Csa_013507 [Cucumis sativus]) HSP 1 Score: 355.9 bits (912), Expect = 1.9e-94 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. NCBI nr
Match: XP_008440737.1 (PREDICTED: HVA22-like protein a [Cucumis melo] >KAA0036071.1 HVA22-like protein a [Cucumis melo var. makuwa] >TYJ98878.1 HVA22-like protein a [Cucumis melo var. makuwa]) HSP 1 Score: 350.5 bits (898), Expect = 8.1e-93 Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. NCBI nr
Match: XP_038893618.1 (HVA22-like protein a [Benincasa hispida]) HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92 Identity = 166/170 (97.65%), Postives = 169/170 (99.41%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. NCBI nr
Match: XP_022137380.1 (HVA22-like protein a [Momordica charantia]) HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87 Identity = 155/170 (91.18%), Postives = 165/170 (97.06%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. NCBI nr
Match: XP_022924017.1 (HVA22-like protein a [Cucurbita moschata]) HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84 Identity = 152/172 (88.37%), Postives = 166/172 (96.51%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy Swiss-Prot
Match: Q9S7V4 (HVA22-like protein a OS=Arabidopsis thaliana OX=3702 GN=HVA22A PE=2 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 9.7e-57 Identity = 102/172 (59.30%), Postives = 133/172 (77.33%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy Swiss-Prot
Match: Q9S784 (HVA22-like protein c OS=Arabidopsis thaliana OX=3702 GN=HVA22C PE=2 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 8.5e-45 Identity = 91/180 (50.56%), Postives = 125/180 (69.44%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy Swiss-Prot
Match: Q9SYX7 (HVA22-like protein b OS=Arabidopsis thaliana OX=3702 GN=HVA22B PE=2 SV=2) HSP 1 Score: 169.5 bits (428), Expect = 3.4e-41 Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy Swiss-Prot
Match: Q682H0 (HVA22-like protein f OS=Arabidopsis thaliana OX=3702 GN=HVA22F PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 8.9e-26 Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy Swiss-Prot
Match: Q9FED2 (HVA22-like protein e OS=Arabidopsis thaliana OX=3702 GN=HVA22E PE=2 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20 Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy TrEMBL
Match: A0A0A0LQD1 (HVA22-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G033020 PE=3 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 9.3e-95 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy TrEMBL
Match: A0A5D3BL17 (HVA22-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00740 PE=3 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 3.9e-93 Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy TrEMBL
Match: A0A1S3B2F5 (HVA22-like protein OS=Cucumis melo OX=3656 GN=LOC103485036 PE=3 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 3.9e-93 Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy TrEMBL
Match: A0A6J1C6H3 (HVA22-like protein OS=Momordica charantia OX=3673 GN=LOC111008847 PE=3 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87 Identity = 155/170 (91.18%), Postives = 165/170 (97.06%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. ExPASy TrEMBL
Match: A0A6J1E7Q1 (HVA22-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431566 PE=3 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84 Identity = 152/172 (88.37%), Postives = 166/172 (96.51%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. TAIR 10
Match: AT1G74520.1 (HVA22 homologue A ) HSP 1 Score: 221.1 bits (562), Expect = 6.9e-58 Identity = 102/172 (59.30%), Postives = 133/172 (77.33%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. TAIR 10
Match: AT1G69700.1 (HVA22 homologue C ) HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46 Identity = 91/180 (50.56%), Postives = 125/180 (69.44%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. TAIR 10
Match: AT5G62490.1 (HVA22 homologue B ) HSP 1 Score: 169.5 bits (428), Expect = 2.4e-42 Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. TAIR 10
Match: AT2G42820.1 (HVA22-like protein F ) HSP 1 Score: 118.2 bits (295), Expect = 6.3e-27 Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of CsaV3_1G005320 vs. TAIR 10
Match: AT5G50720.1 (HVA22 homologue E ) HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21 Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|