CsaV3_1G004710 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G004710
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	U2 small nuclear ribonucleoprotein B
Location	chr1: 2988113 .. 2991904 (+)
RNA-Seq Expression	CsaV3_1G004710
Synteny	CsaV3_1G004710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGGTCGTGGACACCAAAACCTGTGAGTACGATCTTGGTGCTCTGAAGACCTTTGCTGCTAGGGCTCCAAGTCTCCTTCTTTCTTCACTTTCGGAAAACCACATTTCTGTCCATTACTCCGTGATTCTCTATAATCCGAAGGCCCTGAACCCTAACCACCATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGGTGATTCACTCTTAGCTTTTCACTTAATCTTACTATATTCCTTCCGTAAATGTGTTTTCTTCTGTTCGTTAAGTAGAAACCTTAGTATAATCGAAGTGATCTTCGGCACATTTTATCTTTATCATTTCGCCTTTGGTTTCCCCGGCAAGAGAGGGGGGTTATTTGGCAAAGTTGGATTTGTTTTTATGACAGCATTTAATATTTCTTACGATGCCTACAGTAATGACTCGAGAAGATTAACGATTTCAGTTGAAATTTGAGTTTTAGGGTGATAGAGCTGGTATCTTGAAAGGTTAGTTAGAACTTGGGATTTTGTTTTCTATTTTGGTTTGTTTAGTGCCCGTTTGATAACCATTTGGTTTTTGATTTCTTGTTTTTCAAAATGAAGCTTATAAACACATTGGATTTTTTATTTTATTTTTTAATTTGTAATCTACAATTCACCAATGTTTAGTTTTTAAAAATTGTTTTTGTTTTTGGAATTGGCTAAGAATTCAACTATTGTGCATTTGTATATAAGAAATATGTAAACCGATACGAGAAATTAAGAGAAAAGATTTTTAATTTTCAAAAACCAAAAGCCAAAACAGAATGGTAACCAAACTGACCTTAATGCTCAGTTTTTGACAATATTACATCACATGTGGAGGGGTTGGTTTGAACCCAAGTCCTCATAGTGTTCAGAATTTGATGGTATACTAATTTTCTCCCCCTTGGACAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCGAAATTGCTTTTCATACTTATTTTGTGCCTTTCATCTATGGACTGTTCTAGCGCACTTTCAATATTTCCAAGTAACTGTGGGTAGCTTTCTTTGTAAACGGGATTGGATTCTAACTGTTCAATGAGTCTTATGTTGAGATGGTCAAGAGAAAGTCTATAAACAATCACCCTCAATGTTGTGCCAGTTTAGCTGCTTTGCATGTCTGAAATAACGACCTAATTTTATTGGATATGTGGGTTTTTATATTGGCCATGTGCTGGTTTTAAGCATTTTGAGATCTTTCTTTGCAACCCCTATATATTGAGCATATCTTTTTTCAGTGAATGCCATCGGTCACAAATTACAAGCTTATATGCTGCTTAGAATGTTGTAACTTGGATAGAAGGAGATCATTTCTCCTTGTTCTAATGTGGGTATAATAAAGGGCTTAGTGATAATTATATCATTTCATAGTGGGACACCTATTTGGGATAGTACCCTTCAAGTTTTTTTGGACACCCAAATTTTGTAGGGTCCAATGGGTTATCCTATGAGATTAAGTTGAGATGTATCAATCTGACTTGAAACGCTTATGCCTATAAAATACAGAAGGAAAAAAAAAAAGACTTGGAGACATATCCATGATTGTGTTTGGAAGAAACAAGTATTATTATTTTTTTTGCTCTTCATTTCAGTTATTTTTTTGTTTCATCTCGAAGTTTGTGTACTATATTCAAATATACAGGTTATTCTGATGTTTAACAAGAAGATACTTCTGTTGACCATCTCAAAAATATAAATGACTTTTGTTTCTTTTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTGATAGACAATATATTTTCACTATGTTTTTTTGAATTTTTTGACATAACCTCTCATTTTCTTGTTGCATTGCTTTTGAAACATCTCAAGGGTTTTAAACTGGTTTATGCTCCTGACTATCTTTTAATTTGCTTATCCAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGTAAGTTAGTTTTCATTCTTATTTTATTTTATTTTTATAAAAACTTCATTTTTATTTTCCTTCTTCATATGAGCTGTATTGTATTAATTGTTTTCACCAGAAGTGGTCCCAAACATGTATTGTGAGTTTTTTTCGGACAACGTGGTTCTCTGGTTAATTGTATTCTCTTCACATTTGTTAGAAAGTCATTGATGTCCATTCCAATTAGATTTTACCTTAGTGCCCCTGAGATCAGGTAAAGTTAATCAACATGTTTCCAGAACTATTTTTACTAAGAAATCCTCTTTGTTGTGTGTTATTTCTGCAGGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCAACCTTTGTTCTACTGTTACTATTTTGGAATCTGCAGCAGGTTTATGTTAATGTCACCGCACATAAACATGAGTCGTGAGTTTTTATGTAAAGTTCAGATATCCTTCCCCACCTTCAAAGAGAAAGAAAGAAGGAAAACGTTGGGAGGCAGCCCACTGGAAGCCAAGGGACTTGATGAGTTTTGCGGGCTATGCTAATTCCAGTTTCCAGGGGTAGCAAGAAAATAGATTTATGTTAGGTTGTCAAAAAGGAAACAGAGAGAACTAATCAAAGACCTTTTTTTCTTTAAATGTGTTCATGTATTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGGGAACGGGGAGCTGAAATTTAGGGGACAATGTTGATTTGACTTTTGCATGAATATTTCGTGCTCAACAATGAAGTGTTCATTTCTGTCAGTCTCAGGGACAGTGCGTGTGTTTTCTTCCATTGGTCGATTATGAGCAAAAATTTGACCCAAACTTAGTTTCAAAGTTGTGTCATTTACCGGATCAACTGCATAGCTATTGCTCGTTTTTTTTTTTTTTAATCATTATTAAATGTGGGGCCATTTGATATTTTATTTCATAGGGATCTGTGATTCCATCAACTGCTGACCTTCACAGAACTTCAGTGCTAAAACTGACATTGCGTCTCTCTTTGGGTATCTTCATTCAGATACATCGACCACGTCGCCTGTAAGTTCCCTTGTCTTTTTCTTCTTCCTGCCTATTTTCATGAAAGATTGAAAGATATCTATGATATGAATATATATATTAATTAGGTGAAAAAATTATGTTTGTTTTCTTGTGTCTTATTATCTTGTTGCAAGCTCATCACAATAATCAAAATTATGTTGGTTTCCAACTGTATTGTTTTGTAATTTTCTTTCTGTTGCAATGTTCTTTTTTGTTCTTTTTT

mRNA sequence

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTGTCAGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCGTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGTCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTATTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAAAAAGCGGCGTGCTGAAGAAACACATCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCTATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK*

Homology

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 3.0e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 445.3 bits (1144), Expect = 3.3e-121
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 436.0 bits (1120), Expect = 2.0e-118
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 434.9 bits (1117), Expect = 4.4e-118
Identity = 221/231 (95.67%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AKADGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQSAMPNGTTTENG SNATFRHANPSA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.9 bits (1117), Expect = 4.4e-118
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +ETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.6e-94
Identity = 177/232 (76.29%), Postives = 204/232 (87.93%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+EKK KQEEK E+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

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BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 6.5e-88
Identity = 167/235 (71.06%), Postives = 199/235 (84.68%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.6e-86
Identity = 173/233 (74.25%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEK-AEKKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AEKKRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEETHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEE  QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.6e-86
Identity = 172/233 (73.82%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEK-AEKKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AEKKRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEETHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           AEE  QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-65
Identity = 136/234 (58.12%), Postives = 172/234 (73.50%), Query Frame = 0


Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQ- 126
            A++ MQ+FPF+ KPMRIQYAKTKSD IAKADG+FVPRE++K+ +EK EKK++ E+ H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 127 SAMPNGTTTENGGSNATFRHANPSATE--------ATPNNILFIENLPHETSSMMLQVLF 186
           S +  G     G   A      P A            PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.4e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 228/231 (98.70%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEKAEKKRRA
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.6e-119
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.6e-119
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of CsaV3_1G004710 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.5 bits (885), Expect = 3.3e-95
Identity = 177/232 (76.29%), Postives = 204/232 (87.93%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+EKK KQEEK E+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CsaV3_1G004710 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 342.0 bits (876), Expect = 3.6e-94
Identity = 176/232 (75.86%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + KA+GSFVP+EKK KQEEK E+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNG TT+NG          PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPPP----FQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of CsaV3_1G004710 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 325.1 bits (832), Expect = 4.6e-89
Identity = 167/235 (71.06%), Postives = 199/235 (84.68%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK E+KR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CsaV3_1G004710 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-77
Identity = 148/197 (75.13%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFRHANPSATEA-T 155
           KA+GSFVP+EKK KQEEK E+KR AEET Q +MPNG TT+NG     F+   PS  +   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMP 126

Query: 156 PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 215
           PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQ
Sbjct: 127 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 186

Query: 216 GFKIDPQHPMAISFAKK 232
           GFKI PQ+PM +SFAKK
Sbjct: 187 GFKITPQNPMVVSFAKK 200

[Close]

BLAST of CsaV3_1G004710 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 245.4 bits (625), Expect = 4.6e-65
Identity = 135/244 (55.33%), Postives = 172/244 (70.49%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETH 124
           AS A+ +M NFPFY+K MRIQYAKTKSD +AKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QS-----------------AMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHE 184
            S                 A P       GG        N     A PNNILF++NLPHE
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMK-----PNMPEAPAPPNNILFVQNLPHE 192

Query: 185 TSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAIS 232
           T+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I+
Sbjct: 193 TTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLIT 250

The following BLAST results are available for this feature:

BLAST of CsaV3_1G004710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137370.1	3.0e-122	100.00	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_008457301.1	3.3e-121	98.70	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_022949507.1	2.0e-118	96.54	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_022154903.1	4.4e-118	95.67	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]
XP_023525708.1	4.4e-118	96.10	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]

BLAST of CsaV3_1G004710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	4.6e-94	76.29	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	6.5e-88	71.06	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	1.6e-86	74.25	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	3.6e-86	73.82	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2Y0J7	2.6e-65	58.12	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of CsaV3_1G004710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPT7	1.4e-122	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]
A0A5D3BF51	1.6e-121	98.70	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	1.6e-121	98.70	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KA04	9.6e-119	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	9.6e-119	96.54	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsaV3_1G004710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	3.3e-95	76.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	3.6e-94	75.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	4.6e-89	71.06	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	2.4e-77	75.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	4.6e-65	55.33	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..151
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..231
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..231
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 155..227 e-value: 5.56557E-38 score: 124.989
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..88 e-value: 1.10916E-50 score: 157.69
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..85 e-value: 2.5E-12 score: 57.0 coord: 158..227 e-value: 3.6E-10 score: 49.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..81 e-value: 1.0E-8 score: 34.9 coord: 159..219 e-value: 2.8E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.214708
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..231 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..119 e-value: 4.6E-31 score: 109.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 146..231 e-value: 5.2E-22 score: 79.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G004710.1	CsaV3_1G004710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding