CsaV3_1G004110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G004110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 2576997 .. 2577322 (-)
RNA-Seq Expression	CsaV3_1G004110
Synteny	CsaV3_1G004110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGTAGCTCATACAACAGCATCTCAAGCAGCTTTTAACTATCTACCTAATTACTCAAACTGGTAAATTTCTATTGCCTAGTCCTTAAATCTATGGAGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

mRNA sequence

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Coding sequence (CDS)

ATGGCCACAAGCCCAGCTGTGCATTGCCCGTCCCCTTGGCCTGTAAGGAAGGGTAACAAAATCAAGAAGTTTTGTAGAGAAACTGAAGAATTGGCTTCTGCTGAGCCCTTCTTAAGCAGAGGAGGGGTTAATAACCATTGTGCAAAATTATTGCTGCAGATTCTTGCCACTGCAGTAGCTCGCTGCATTGCTGATTACTTGCTTCAAAGTTCAAATCGCTCTAAACCTTGA

Protein sequence

MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVARCIADYLLQSSNRSKP*

Homology

[Close]

BLAST of CsaV3_1G004110 vs. NCBI nr
Match: KGN63850.1 (hypothetical protein Csa_014060 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 77
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

[Close]

BLAST of CsaV3_1G004110 vs. NCBI nr
Match: TYK28466.1 (hypothetical protein E5676_scaffold629G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-09
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQI 55
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG       K LL I
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRGTWLIQLLKQLLTI 54

[Close]

BLAST of CsaV3_1G004110 vs. NCBI nr
Match: KAA0058113.1 (hypothetical protein E6C27_scaffold274G004220 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 42
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

[Close]

BLAST of CsaV3_1G004110 vs. ExPASy TrEMBL
Match: A0A0A0LPM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024820 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60
          MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA
Sbjct: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQILATAVA 60

Query: 61 RCIADYLLQSSNRSKP 77
          RCIADYLLQSSNRSKP
Sbjct: 61 RCIADYLLQSSNRSKP 76

[Close]

BLAST of CsaV3_1G004110 vs. ExPASy TrEMBL
Match: A0A5D3DXH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00990 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRGGVNNHCAKLLLQI 55
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG       K LL I
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRGTWLIQLLKQLLTI 54

[Close]

BLAST of CsaV3_1G004110 vs. ExPASy TrEMBL
Match: A0A5A7UQG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004220 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MATSPAVHCPSPWPVRKGNKIKKFCRETEELASAEPFLSRG 42
          MA S  VHCPSP PVRKGNKIKKF RE EELASA+PFLSRG
Sbjct: 1  MARSSDVHCPSPRPVRKGNKIKKFRREPEELASAKPFLSRG 41

The following BLAST results are available for this feature:

BLAST of CsaV3_1G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63850.1	3.1e-36	100.00	hypothetical protein Csa_014060 [Cucumis sativus]	[more]
TYK28466.1	4.3e-09	70.37	hypothetical protein E5676_scaffold629G00990 [Cucumis melo var. makuwa]	[more]
KAA0058113.1	5.6e-09	82.93	hypothetical protein E6C27_scaffold274G004220 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G004110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPM9	1.5e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024820 PE=4 SV=1	[more]
A0A5D3DXH9	2.1e-09	70.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQG9	2.7e-09	82.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_1G004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G004110.1	CsaV3_1G004110.1	mRNA