CsaV3_1G003330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G003330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr1: 2073854 .. 2076407 (-)
RNA-Seq Expression	CsaV3_1G003330
Synteny	CsaV3_1G003330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAACGAATTTTCTGATTTGGTAGTAGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGAGCGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTCGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAATTGCCTGAGCTTGTTGTTTTTCTTCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACTTCACGTGAAAAGTGCTTTGAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATACAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGAGTCGACAATTTCAAGTACTGATTCAACACAGACTCTTGATAAAAACTTTAACGAAGTTTATGAGAAGCAAAAGTTTCATTCTGATGCAATAGATGAAGTTCCTTCTGAGGTTCCTCATAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTGAGAGCAACCTTAGCTTAGCATTCTTCCTGAGATCCTTTTTAACTAGAAAATTTAATTTGATTGTCTGCACCCTTAGTAGGTTACAGGTAAAAAGGAAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAAAAACAAAGGCAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAGCATTTGTCGCAACTCCGGTTTATCACAAAGCACAGTAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCGTGACTGTACCATGGCCGAGTACTATACACCCGAAAATGAAACGGGATTATACAGTAGCCATTGTTCCTCTGCAGGTGATCCTAGTTTGAACTCAGTGAGAAGACCCTCATTGTCGTCTTATTTGGGCAGTGGATCTCTTCGGTCGAATAGCAGCACCAACAGCTCACATTCTTTTGCTTTTCCAATGTACTTTTGCTTCTCTAAACATTATCTCATTCTACTTCATTAATTGAAACTGAAACATATAGCTTATGATCTTGACCTCTTCTTGAATTCACAGTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGAAACTATGGAGACTATGTTTTCCCTGCTGTAATTTCTGAGCCTCTTGTTGCCCAACCTGTCAGTGCTCTTGATTGTTTTCACTCAGATTCATTTTCATTTGTATGATATATGTAGAACTACAGTGATCCCAACATTTGTGTTGTAGTTTATTTTATAGCATAAAAAACCCATGTTCTGAATACATTGTTTACATTGTGTCTCACTTTTAGCCTCAGATATTAGCTTAGACAATTACCAATCAAGAAAATAAGACATTTGAGAATTTTAAAGAGTTCCTAAAAAACCACTTAACTCAAAAGTTGAGAAGGAAAGCTCCACTGGAAGGTTATGCCCAGCTCAATGGTTAAAAAGTTGAATCAAGATTTTAATAGCTTTAAGCTTGAATCAAGTACTATACCAGTACAAAATCCATTCCCTTCAAAAAAATTTACACGTAATTAAATGATATATAATTGTATTTGATGGACTTCATACCATTCTTAAATGTCACCGATGAGGTAGCTTAAGTATGGTGGAAGATTTTCGTAGTACTAGAAATTTCCTCTATTAGCAATAAAATAAGACCTACCAAATTTAAATATTTTTGGTTTCATATTAATAACCTATATGTTAGACCTCACCTCTTATTATTGTTAGTAGTATGGAGCCCACACGTGAAGAGATCTTTAAAGAGTAAATCGAAGACATAAGGTAGTAATATGATACTTATTTAACCTATGGATGAACTCCAATAAAAGTGGTCCTACTCCACTTAATCTTTAGATATTCCCAAGTAAGCTACAGTTACTTATGAAACTTTCTACCACATTCTTAATCCATTATTGCTCAAATTTGTAATCTCAATGGCTTCTGACTTTTGCACATAAAATAATGATATAGTTGAAATCAGGTCAAGAAGAAGATATCATGGGAATAGTAGGATAAGATCCTCCTCAACTATAATTAGATTGCTGGAAGTTTCTAGAGCTCTTGTGAGACAAATGGTTGAGTTGATAGATAGCTCAGTCCAATCCTAATCCAACTTGGGAGCCTTAAGCCAAATGGTGCCCACTTTTAGTGTGTATTAAGAGTCTTGAAACTGAGCATCTAATGATGCTCCATTGGACCATTTAATATGCAGTGGAAACCACTGTTGGCCACACAAACAAAAAACCATTAGCTTGGGAAAGTAGGTGCCAAATCTGTCTGTTTAGGTAATACTATCTTTTCATTCTTAGCTCACACCATCCATTTCTACCATTACATCTCCCCACCATTACCACTATGTTTTGATTATGTCTAAACAATGCAGGTGACACCAGTTTTGCAGTGGTCAGAAGCATCGTCGAGCAGGGAGGAGGCGGGTTACAGTTAA

mRNA sequence

ATGAGGAACGAATTTTCTGATTTGGTAGTAGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGAGCGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTCGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAATTGCCTGAGCTTGTTGTTTTTCTTCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACTTCACGTGAAAAGTGCTTTGAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATACAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGAGTCGACAATTTCAAGTACTGATTCAACACAGACTCTTGATAAAAACTTTAACGAAGTTTATGAGAAGCAAAAGTTTCATTCTGATGCAATAGATGAAGTTCCTTCTGAGGTTCCTCATAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTTACAGGTAAAAAGGAAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAAAAACAAAGGCAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAGCATTTGTCGCAACTCCGGTTTATCACAAAGCACAGTAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCGTGACTGTACCATGGCCGAGTACTATACACCCGAAAATGAAACGGGATTATACAGTAGCCATTGTTCCTCTGCAGTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGAAACTATGGAGACTATGTTTTCCCTGCTGTAATTTCTGAGCCTCTTGTTGCCCAACCTGTGACACCAGTTTTGCAGTGGTCAGAAGCATCGTCGAGCAGGGAGGAGGCGGGTTACAGTTAA

Coding sequence (CDS)

ATGAGGAACGAATTTTCTGATTTGGTAGTAGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGAGCGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTCGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAATTGCCTGAGCTTGTTGTTTTTCTTCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACTTCACGTGAAAAGTGCTTTGAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATACAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGAGTCGACAATTTCAAGTACTGATTCAACACAGACTCTTGATAAAAACTTTAACGAAGTTTATGAGAAGCAAAAGTTTCATTCTGATGCAATAGATGAAGTTCCTTCTGAGGTTCCTCATAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTTACAGGTAAAAAGGAAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAAAAACAAAGGCAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAGCATTTGTCGCAACTCCGGTTTATCACAAAGCACAGTAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCGTGACTGTACCATGGCCGAGTACTATACACCCGAAAATGAAACGGGATTATACAGTAGCCATTGTTCCTCTGCAGTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGAAACTATGGAGACTATGTTTTCCCTGCTGTAATTTCTGAGCCTCTTGTTGCCCAACCTGTGACACCAGTTTTGCAGTGGTCAGAAGCATCGTCGAGCAGGGAGGAGGCGGGTTACAGTTAA

Protein sequence

MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYSSKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLKYNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKSVPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQSTVEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSAVCQQNGMEVQKGWQKLIRCKHEGGNYGDYVFPAVISEPLVAQPVTPVLQWSEASSSREEAGYS*

Homology

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BLAST of CsaV3_1G003330 vs. NCBI nr
Match: KAE8652447.1 (hypothetical protein Csa_014115 [Cucumis sativus])

HSP 1 Score: 674.5 bits (1739), Expect = 4.9e-190
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSAVCQQNGMEVQKGWQKLIRCK 300
           VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSAVCQQNGMEVQKGWQKLIRCK
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSAVCQQNGMEVQKGWQKLIRCK 300

Query: 301 HEGGNYGDYVFPAVISEPLVAQPVTPVLQWSEASSSREEAGYS 344
           HEGGNYGDYVFPAVISEPLVAQPVTPVLQWSEASSSREEAGYS
Sbjct: 301 HEGGNYGDYVFPAVISEPLVAQPVTPVLQWSEASSSREEAGYS 343

[Close]

BLAST of CsaV3_1G003330 vs. NCBI nr
Match: TYJ98239.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 576.6 bits (1485), Expect = 1.4e-160
Identity = 303/344 (88.08%), Postives = 312/344 (90.70%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG   RNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAV----------------- 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAV                 
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVDLFGRIAAPTAHILLLF 300

Query: 301 --CQQNGMEVQKGWQKLIRCKHEGGNYGDYVFPAVISEPLVAQP 324
             CQQNGMEVQKGWQKLIRCKHEGGNYGDYV PAVISEPL+AQP
Sbjct: 301 QFCQQNGMEVQKGWQKLIRCKHEGGNYGDYVCPAVISEPLIAQP 343

[Close]

BLAST of CsaV3_1G003330 vs. NCBI nr
Match: KAA0058016.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 576.6 bits (1485), Expect = 1.4e-160
Identity = 304/346 (87.86%), Postives = 313/346 (90.46%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG    NSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAV----------------- 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAV                 
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVDLFGRIAAPTAHILLLF 300

Query: 301 --CQQNGMEVQKGWQKLIRCKHEGGNYGDYVFPAVISEPLVAQPVT 326
             CQQNGMEVQKGWQKLIRCKHEGGN GDYVFPAVISEPL+AQPVT
Sbjct: 301 QFCQQNGMEVQKGWQKLIRCKHEGGNCGDYVFPAVISEPLIAQPVT 345

[Close]

BLAST of CsaV3_1G003330 vs. NCBI nr
Match: XP_031742010.1 (uncharacterized protein LOC105434534 [Cucumis sativus] >XP_031742012.1 uncharacterized protein LOC105434534 [Cucumis sativus])

HSP 1 Score: 542.3 bits (1396), Expect = 2.9e-150
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA 281
           VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA 280

[Close]

BLAST of CsaV3_1G003330 vs. NCBI nr
Match: XP_008453313.1 (PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453315.1 PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453316.1 PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 4.1e-136
Identity = 261/282 (92.55%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG    NSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSA 281
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSA
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA 281

[Close]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL
Match: A0A5A7UV29 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003210 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 6.8e-161
Identity = 304/346 (87.86%), Postives = 313/346 (90.46%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG    NSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAV----------------- 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAV                 
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVDLFGRIAAPTAHILLLF 300

Query: 301 --CQQNGMEVQKGWQKLIRCKHEGGNYGDYVFPAVISEPLVAQPVT 326
             CQQNGMEVQKGWQKLIRCKHEGGN GDYVFPAVISEPL+AQPVT
Sbjct: 301 QFCQQNGMEVQKGWQKLIRCKHEGGNCGDYVFPAVISEPLIAQPVT 345

[Close]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL
Match: A0A5D3BGS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00110 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 6.8e-161
Identity = 303/344 (88.08%), Postives = 312/344 (90.70%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG   RNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAV----------------- 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAV                 
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVDLFGRIAAPTAHILLLF 300

Query: 301 --CQQNGMEVQKGWQKLIRCKHEGGNYGDYVFPAVISEPLVAQP 324
             CQQNGMEVQKGWQKLIRCKHEGGNYGDYV PAVISEPL+AQP
Sbjct: 301 QFCQQNGMEVQKGWQKLIRCKHEGGNYGDYVCPAVISEPLIAQP 343

[Close]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL
Match: A0A0A0LRX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.4e-150
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA 281
           VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEYYTPENETGLYSSHCSSA 280

[Close]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL
Match: A0A1S3BVX8 (uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 2.0e-136
Identity = 261/282 (92.55%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180

Query: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG    NSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQST 240

Query: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSA 281
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSA
Sbjct: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA 281

[Close]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL
Match: A0A6J1C133 (uncharacterized protein LOC111007481 OS=Momordica charantia OX=3673 GN=LOC111007481 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 180/282 (63.83%), Postives = 214/282 (75.89%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60
           M NEFS LVVDN++KSR  EKNK KVD +E F+RR+Y+VQESD G  ESE SGD  SR+S
Sbjct: 1   MMNEFSSLVVDNLQKSRFTEKNKWKVDGVESFRRRSYMVQESDDGLGESEPSGDGRSRFS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120
           S     SSI+DELPE VVFLQETNYEFVKDICID+A TS EKCFEE C  EN +VP +LK
Sbjct: 61  S----MSSIDDELPEFVVFLQETNYEFVKDICIDKAETSHEKCFEEDCDRENGYVPYLLK 120

Query: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKN-FNEVYEKQKFHSDAIDEVPSEVPHKK 180
           YN   +D  +TEES D ES+ISS +S Q L+K+ FN+V EK+K H D IDEVPS++P KK
Sbjct: 121 YNIAVSDGGATEESEDLESSISSIESMQVLEKDFFNKVNEKRKVHYDEIDEVPSDLPRKK 180

Query: 181 SVPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNI--EHGSICRNSGLS 240
           +VPKL LDRKVTGKK A+STNSIAISL+KILDENK+KGKA ARSN   EHGSI  NS LS
Sbjct: 181 TVPKLLLDRKVTGKKAAASTNSIAISLSKILDENKHKGKAAARSNTEHEHGSIYCNSNLS 240

Query: 241 QSTVEGGSSNWTAGCGHCRDC---TMAEYYTPENETGLYSSH 277
            S + GG+S+    CGHC +C   ++ E Y PE++ G + SH
Sbjct: 241 MSKIRGGASS----CGHCHECGSTSIPENYAPEDQMGSHRSH 274

The following BLAST results are available for this feature:

BLAST of CsaV3_1G003330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652447.1	4.9e-190	100.00	hypothetical protein Csa_014115 [Cucumis sativus]	[more]
TYJ98239.1	1.4e-160	88.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0058016.1	1.4e-160	87.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_031742010.1	2.9e-150	100.00	uncharacterized protein LOC105434534 [Cucumis sativus] >XP_031742012.1 uncharact...	[more]
XP_008453313.1	4.1e-136	92.55	PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453315.1 P...	[more]

BLAST of CsaV3_1G003330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV29	6.8e-161	87.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BGS8	6.8e-161	88.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A0A0LRX2	1.4e-150	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1	[more]
A0A1S3BVX8	2.0e-136	92.55	uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=...	[more]
A0A6J1C133	1.4e-81	63.83	uncharacterized protein LOC111007481 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of CsaV3_1G003330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..148
None	No IPR available	PANTHER	PTHR33914:SF4	SUBFAMILY NOT NAMED	coord: 2..285
IPR040378	Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE	PANTHER	PTHR33914	18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN	coord: 2..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G003330.1	CsaV3_1G003330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009786	regulation of asymmetric cell division