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CsaV3_1G003310 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAACAATAGAAAAAAGGAAAATTGAAGGGGGAAAGTGTTTTTAGTGTTATCCCATGTGCTGTAGCTTTTGTTTTCAAAAGATATGAAAAGCCAATGTTATTCTCATAGTTATCCATTGGGAGTTTCAAGAACCTTCCACGACAATCCCTCTTCTTCCCTTCTTCCCTTCTTCCTCCTCTTTTCTTCCAATTATTCTCCAATTCCACCCTTTCCCCACTGTTTCCTCTTTAAAAATCTCTTTCCTCTTTGTCTTGTCCCCCCCAAAATTCCATCCTCTGTTAACGATTCTTCCTTTTTCTCTCTGTAACCTTCCATTTTCTCCAACCACATCTCGCCACGCCCTTCTTACACCGCACCCCACTTCACACAACCATATACCTCATCATTCGCATTGACCCAATTGAAAATCTTTCGATTTCAAGTCACCCCTTTTTTTCCCATTCTTGAATCCGTCTTATAATCCCAGAGAAACAGCAAAACTACCCAAAACCCACTTCTGAATTGGATCTTTCTTCTTTGTTTTCCCATCTCATTGATTTGTTTCTCTTTCGATTTTGTCCCTTGAATTGAATTCGTACCAGTTCCCGTACAGCGCTAAGTCTTGTTAATCCAATTCAACGAGCTTTTGTTGAAAGAAATCCAGGATCCTCGGTGTTGGGACTGAAGGAGCACACTCAGTTTTTTCACTCTGTGGTGGAACTTCTTCTGCGATTTAAGGTTTGATTCTTCTATTTTTTTCCTTTTCGATTCAAACTATTTCTGGGTTTTTCGTTTCATCGCGGATTGGGAATGTTTCGTTTTGATTCTATTTCTTTTTGCATATTACCCATTTCACATTGTTGGGATTCTATCTAGTGTGTTCCTTTTGAGTGCTGGTGTAGTGTGAAATGTGAATCTAAGTGGAAGTGAGGCTCAATTTTAGTTCCTATGTGAATTAGGGTTTTTTTTTTTTTTAAGGTTTTGTTCTCTGGTTTTTTAGGAATCATGTTGGTTATGAATGTGATGAGCTCTAAGAGACAAAGGCGTCCAAATGTTAGGCTAGGGGAAATTGGGGACATATCTGCAGCTTGGGCTTGTGGGTTTTCTCATAGCACTAGAGAAAAGTTAGCTCATAAGGAATGGAAACATGAATTAGATCAAACTGTGGAAAATGAAGACAACCCCATTGTTTTTGGAGAATTGGAGCCATCATCTCCCAAGCTTACAGTCTCTGAACTGGGTGTCTCACCACAAATTTCAACAGAGTTGCAGCTTCATGAAGAGAACAAAAATAACCCCAATTCTTCAGATTTGCCTTTGGAATGTCCGATTTCAACTGAGTTAATTGATGTGACCAAACCTAGACTGAAGTTTAGTGATGTGACTAGGAAATGTAGAGATAAGAAGCGTCGGGGACGTAGTAAAAATGTTGGCTATGCCATTCTTCCTGGTAGTTGGAGTTCAAAACATAGCTCGGATGGCTACTCAATGGATGAGAAAGAATGTGAAGGGACAGGTAATTCTGCTAATGGTTTTGGTGATTCCTCTGATCATCAGACACCAACCACTAGTAAAGAGGAATGCGGCATTGATCAACCAACGCGTCAAGAGCGTGAGTTAAACAACGCTGCACGATTCACTAGTGAGAAGGCTCGGCATAAATCTGGTAACATGCTGGTTAAGATGAGATTAGAAGACGATGGTACTAATGTTGTTAGTAGATGGTTGGAGGGGGTTGGATTTGGCAAGTATGCTGGTGTGTTTGAGATGCATGAGGTGGATGAGGAAGCTTTGCCATTGCTGACCATTGAAGATCTTAAAGAGATCGGTGTATTCTCTGTCGGGACTCGGAGGAAGTTGTATAATGCAATCCGACAGTTAAGAGAAGGAGGAGAGGAGGAAGAAGAAGAAGAAGCAGCTGTCTGAAAGGTTAGAAAGCGAAATGCGCAGAGAATCATCAGCGCCCGTTTACAATTTTATCTTTTTGCTTGTGCAGGATGTGGCCATGGATGTACATATACCTCTAACATGTTTTGTGTTGGTTACATGTCTGAAAACACCAGAACTTCCTTTTTGGCAGTAAATTTGGTGACTTCGTTTTGAAGACAAAATGTGTTTTAAGAACCATGAGATGAAGATGAGATACTTGTGTTCTTCATTTGGTTGGTGTTACTACTTACTGCTATTGAGTTAAAACTAGCAATGTTCCTGTATGCTGAGTATCATTCTTTTTCAGTTTGAACACTAAAACCAATTTGGGCTTGAAACCAACTACTTGAAATGGAAGGGAAAAAAAATGGATTTTCTACTAAAATTTATGCGTAAGAAAGCCTTATATCTTCATGTGAACTTGCAACTTTCCTCTGCTTGCTCATGTCGAAGTTTGGGTGAACATTTGATTTTTTCAAATTGAGTACTTGTTTGAAGTTTTGGTCGATATTGATTTCTTTGGAACTGAGTACTTGTTTGAAATGATGGTTTAAATCATTCACCATTTATTAGAACATATATCATCAACCCTCATTGATTTTTTAAATGATAATCTCAATAGAATTTTAACTATATTTTAGTTAAACTATTTGCAAACAATATGACCATCTATCTTTTTACCTTCAACTTTCAAATCTTCAAAAACTTCAAATCTATACAAACACACGTTTGTTTGAGTGGGTGAATCCCACATCGAAAAAGTTCAAAAAAATAAGCGCGGGAGTGGGAGTATAAAATAGAAGATAGTAAGAACTATGAAACATACTTACCTGGACGGGGTGAATGGGTGATCATTGAGGCCTATGTCCTAAGTTGGTGACCTCCATTGCACTTTGGAGGCTTGCCCACTTAAGGTCTGCCCGCGTGGCAGAGCCTACGTCGTTATTTGTTCCTGTGGGGGGCCTGCGTTCGCGCGGCCCCTCTCTAATTGCGATTATTAATTATTGGCCCATGAACTCATTTGGGCCTTAGATAGGCCCAATAATATAAAAACGTACATTCAAAATAAGTTAAGCGTAGCCTTTCTTTTCAACGCATAATTGAAGTCTTACCCAATTTGTTGTATATTTATTCGAAAAATATAAGCATTCAATTGAATAATAAGGAAACATTTGTTTTAGGTAAAGGGAGAAGTGAGATTGAGAGAGGTGAGGAAGACTTTAATAAATGGAAAGAGACCCATAAAAAAAAGAAAATAAAAGAAATGTAATTAATTAATTAATTAAGAAAATAGAAGAAAGGGGAAAGGGAATGGATAAAATTTGGTTTAATATCTAAAACAGAAAAAGAAAATATCTAAAATGATACATATATATATATATGTGTGTGTGTATATATAATTAATTGATTTGGATTCAAAGATGGGAATTGGGTGGGAAATGCTTGGGGTTTGCATGTGCATAATGCACTCATTTTATTCAATGCTAAGCCGACCTGACGGTGACCTTTTCTATTCCCTTCAAATTACGTTTTTACCCCCCTCTATTCTACACTTACCTTCTTTGTTCAAATTTGTAAACAAAAGGTACAATCTAATTGATCTAATTGACGAGTAGAAGGTCATCAATCTTATTGTGTTTGAAGAAAACTTACGTCACTGTTGTGGGTTGGATTATGGTTATAATTGTGTTGAGTTGTTATTCATTTACGAAAAAATATAAGAATTTTTACACATTTATTCCTATTGTTACTATATTTATGGTTTATATTATGATTATGGAAAAACTAGGGGTGAGCACCGGTAAGTTGGAATTGATTTTTAGACCAAACTGCCATTGAAATGGACGATGGATGATTTAATTAGTAAACACTTAAATTGATCTCAACCATAAATGAGTACATATTAATTAATGGTTGATCGATCTAAATCTTTGACATTTGATTAAATGTTGTTGGTTTCAATTTTTTTCAAATCGACATTGACCAAATTCATCATTTTCTCTTACCGTTTATATTTGGTTGGATCAATCTTAATTGGTCTATTCGATTATTTAATCTATCATGCATGCTGTCAAAGTTGTGGTTCATATACTTTGTTTAGACCTTCACCATAATTTTACTT ATGTTGGTTATGAATGTGATGAGCTCTAAGAGACAAAGGCGTCCAAATGTTAGGCTAGGGGAAATTGGGGACATATCTGCAGCTTGGGCTTGTGGGTTTTCTCATAGCACTAGAGAAAAGTTAGCTCATAAGGAATGGAAACATGAATTAGATCAAACTGTGGAAAATGAAGACAACCCCATTGTTTTTGGAGAATTGGAGCCATCATCTCCCAAGCTTACAGTCTCTGAACTGGGTGTCTCACCACAAATTTCAACAGAGTTGCAGCTTCATGAAGAGAACAAAAATAACCCCAATTCTTCAGATTTGCCTTTGGAATGTCCGATTTCAACTGAGTTAATTGATGTGACCAAACCTAGACTGAAGTTTAGTGATGTGACTAGGAAATGTAGAGATAAGAAGCGTCGGGGACGTAGTAAAAATGTTGGCTATGCCATTCTTCCTGGTAGTTGGAGTTCAAAACATAGCTCGGATGGCTACTCAATGGATGAGAAAGAATGTGAAGGGACAGGTAATTCTGCTAATGGTTTTGGTGATTCCTCTGATCATCAGACACCAACCACTAGTAAAGAGGAATGCGGCATTGATCAACCAACGCGTCAAGAGCGTGAGTTAAACAACGCTGCACGATTCACTAGTGAGAAGGCTCGGCATAAATCTGGTAACATGCTGGTTAAGATGAGATTAGAAGACGATGGTACTAATGTTGTTAGTAGATGGTTGGAGGGGGTTGGATTTGGCAAGTATGCTGGTGTGTTTGAGATGCATGAGGTGGATGAGGAAGCTTTGCCATTGCTGACCATTGAAGATCTTAAAGAGATCGGTGTATTCTCTGTCGGGACTCGGAGGAAGTTGTATAATGCAATCCGACAGTTAAGAGAAGGAGGAGAGGAGGAAGAAGAAGAAGAAGCAGCTGTCTGA ATGTTGGTTATGAATGTGATGAGCTCTAAGAGACAAAGGCGTCCAAATGTTAGGCTAGGGGAAATTGGGGACATATCTGCAGCTTGGGCTTGTGGGTTTTCTCATAGCACTAGAGAAAAGTTAGCTCATAAGGAATGGAAACATGAATTAGATCAAACTGTGGAAAATGAAGACAACCCCATTGTTTTTGGAGAATTGGAGCCATCATCTCCCAAGCTTACAGTCTCTGAACTGGGTGTCTCACCACAAATTTCAACAGAGTTGCAGCTTCATGAAGAGAACAAAAATAACCCCAATTCTTCAGATTTGCCTTTGGAATGTCCGATTTCAACTGAGTTAATTGATGTGACCAAACCTAGACTGAAGTTTAGTGATGTGACTAGGAAATGTAGAGATAAGAAGCGTCGGGGACGTAGTAAAAATGTTGGCTATGCCATTCTTCCTGGTAGTTGGAGTTCAAAACATAGCTCGGATGGCTACTCAATGGATGAGAAAGAATGTGAAGGGACAGGTAATTCTGCTAATGGTTTTGGTGATTCCTCTGATCATCAGACACCAACCACTAGTAAAGAGGAATGCGGCATTGATCAACCAACGCGTCAAGAGCGTGAGTTAAACAACGCTGCACGATTCACTAGTGAGAAGGCTCGGCATAAATCTGGTAACATGCTGGTTAAGATGAGATTAGAAGACGATGGTACTAATGTTGTTAGTAGATGGTTGGAGGGGGTTGGATTTGGCAAGTATGCTGGTGTGTTTGAGATGCATGAGGTGGATGAGGAAGCTTTGCCATTGCTGACCATTGAAGATCTTAAAGAGATCGGTGTATTCTCTGTCGGGACTCGGAGGAAGTTGTATAATGCAATCCGACAGTTAAGAGAAGGAGGAGAGGAGGAAGAAGAAGAAGAAGCAGCTGTCTGA MLVMNVMSSKRQRRPNVRLGEIGDISAAWACGFSHSTREKLAHKEWKHELDQTVENEDNPIVFGELEPSSPKLTVSELGVSPQISTELQLHEENKNNPNSSDLPLECPISTELIDVTKPRLKFSDVTRKCRDKKRRGRSKNVGYAILPGSWSSKHSSDGYSMDEKECEGTGNSANGFGDSSDHQTPTTSKEECGIDQPTRQERELNNAARFTSEKARHKSGNMLVKMRLEDDGTNVVSRWLEGVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVFSVGTRRKLYNAIRQLREGGEEEEEEEAAV* Homology
BLAST of CsaV3_1G003310 vs. NCBI nr
Match: XP_004138329.1 (uncharacterized protein LOC101220579 [Cucumis sativus] >KGN63766.1 hypothetical protein Csa_014281 [Cucumis sativus]) HSP 1 Score: 609.0 bits (1569), Expect = 2.3e-170 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. NCBI nr
Match: TYJ98241.1 (uncharacterized protein E5676_scaffold346G00130 [Cucumis melo var. makuwa]) HSP 1 Score: 567.0 bits (1460), Expect = 9.9e-158 Identity = 287/304 (94.41%), Postives = 298/304 (98.03%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. NCBI nr
Match: XP_008453318.1 (PREDICTED: uncharacterized protein LOC103494071 [Cucumis melo] >KAA0058018.1 uncharacterized protein E6C27_scaffold274G003230 [Cucumis melo var. makuwa]) HSP 1 Score: 560.5 bits (1443), Expect = 9.3e-156 Identity = 283/303 (93.40%), Postives = 294/303 (97.03%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. NCBI nr
Match: XP_038879832.1 (uncharacterized protein LOC120071569 [Benincasa hispida] >XP_038879834.1 uncharacterized protein LOC120071569 [Benincasa hispida]) HSP 1 Score: 514.6 bits (1324), Expect = 5.8e-142 Identity = 261/300 (87.00%), Postives = 276/300 (92.00%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. NCBI nr
Match: XP_022987927.1 (uncharacterized protein LOC111485334 [Cucurbita maxima]) HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-127 Identity = 241/304 (79.28%), Postives = 264/304 (86.84%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy Swiss-Prot
Match: Q4ACU6 (SH3 and multiple ankyrin repeat domains protein 3 OS=Mus musculus OX=10090 GN=Shank3 PE=1 SV=3) HSP 1 Score: 52.8 bits (125), Expect = 8.2e-06 Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy Swiss-Prot
Match: Q9JLU4 (SH3 and multiple ankyrin repeat domains protein 3 OS=Rattus norvegicus OX=10116 GN=Shank3 PE=1 SV=3) HSP 1 Score: 52.8 bits (125), Expect = 8.2e-06 Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy Swiss-Prot
Match: Q9BYB0 (SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens OX=9606 GN=SHANK3 PE=1 SV=3) HSP 1 Score: 51.6 bits (122), Expect = 1.8e-05 Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy Swiss-Prot
Match: Q9H694 (Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 4.1e-05 Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy Swiss-Prot
Match: Q99MQ1 (Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 4.1e-05 Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy TrEMBL
Match: A0A0A0LUR2 (SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015600 PE=4 SV=1) HSP 1 Score: 609.0 bits (1569), Expect = 1.1e-170 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy TrEMBL
Match: A0A5D3BHV6 (SAM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00130 PE=4 SV=1) HSP 1 Score: 567.0 bits (1460), Expect = 4.8e-158 Identity = 287/304 (94.41%), Postives = 298/304 (98.03%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy TrEMBL
Match: A0A5A7US96 (SAM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003230 PE=4 SV=1) HSP 1 Score: 560.5 bits (1443), Expect = 4.5e-156 Identity = 283/303 (93.40%), Postives = 294/303 (97.03%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy TrEMBL
Match: A0A1S3BVZ9 (uncharacterized protein LOC103494071 OS=Cucumis melo OX=3656 GN=LOC103494071 PE=4 SV=1) HSP 1 Score: 560.5 bits (1443), Expect = 4.5e-156 Identity = 283/303 (93.40%), Postives = 294/303 (97.03%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. ExPASy TrEMBL
Match: A0A6J1JBP7 (uncharacterized protein LOC111485334 OS=Cucurbita maxima OX=3661 GN=LOC111485334 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 8.8e-128 Identity = 241/304 (79.28%), Postives = 264/304 (86.84%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. TAIR 10
Match: AT3G48800.1 (Sterile alpha motif (SAM) domain-containing protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. TAIR 10
Match: AT5G23680.1 (Sterile alpha motif (SAM) domain-containing protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 0
BLAST of CsaV3_1G003310 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein ) HSP 1 Score: 53.5 bits (127), Expect = 3.4e-07 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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