CsaV3_1G003140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G003140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 1950971 .. 1951817 (+)
RNA-Seq Expression	CsaV3_1G003140
Synteny	CsaV3_1G003140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCTTCACCCCAACCATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGAAAGGGAATTAGTAAGAATAGCTATAGACCAATCAAACCAAATCACTTAATCGAACGTTTATTCGTAAAATTGTGAGACTAAAAAGGTTATAACTACATTCTTCAATGTGTAGGGATCAACCCAACCTATATTGACCGGTTGATTTGTCGGTTTGTGATTTTTTTTAATATAATAAACGCTCTTTCGATTAATTTTTCACAAACAATTCTATGCAAAAATCACCTTGAATTCAATACGTAATTCAAAAGAAACTAATGTCCAAATTCAAAGTGCATATACAAAACATTCAAAGTCATGTTCAAATCCATTCAAAATAGGAATAAAAAAAAGTCCAAATTTCAATAATAACTATTAGCC

mRNA sequence

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGA

Coding sequence (CDS)

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGA

Protein sequence

MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPPNPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID*

Homology

[Close]

BLAST of CsaV3_1G003140 vs. NCBI nr
Match: KGN63749.1 (hypothetical protein Csa_013996 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]

BLAST of CsaV3_1G003140 vs. NCBI nr
Match: TYK28377.1 (hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.7e-58
Identity = 121/146 (82.88%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKN K KKRD+ARTIAK+FR         VL EKLEE SKERMEVR LH+IKFGI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFR---------VLKEKLEEASKERMEVRTLHKIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEI+DKK ISGL PLRITRVP GGPMEFHEIVKEAEKGSAPLKN +KGKPP
Sbjct: 61  SFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSY 147
           NPK AYHRSC NEWHPQVFHFISNSY
Sbjct: 121 NPKTAYHRSCFNEWHPQVFHFISNSY 137

[Close]

BLAST of CsaV3_1G003140 vs. NCBI nr
Match: KAA0058005.1 (hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58
Identity = 120/146 (82.19%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKN K KKRD+ARTIAKRFR         VL EKLEE SKERMEVR +H+IKFGI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFR---------VLKEKLEEASKERMEVRTVHQIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRM TEI+DKK ISGL PLRITRVP GGPMEFHEIVKEAEKGSAPLKN +KGKPP
Sbjct: 61  SFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSY 147
           NPK AYHRSC NEWHPQVFHFISNSY
Sbjct: 121 NPKTAYHRSCFNEWHPQVFHFISNSY 137

[Close]

BLAST of CsaV3_1G003140 vs. NCBI nr
Match: KAG6589576.1 (hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-48
Identity = 112/150 (74.67%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERME--VRALHEIK 60
           MAKTR K+ K  KR +AR IAK+F+V+N + RQKL LTEK  + SKE M   +R     K
Sbjct: 1   MAKTRGKHSKT-KRGQARAIAKQFKVKNLSIRQKLGLTEKPAKVSKEGMGFFIRRTLPRK 60

Query: 61  FGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKG 120
           FGISFTIPDRMATEI+DKKRISGLHPLRITRVP GGPMEFH +VKEAEKGSAPLKNQQ+G
Sbjct: 61  FGISFTIPDRMATEINDKKRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120

Query: 121 KPPNPKAAYHRSCLNEWHPQVFHFISNSYC 148
           +PPNPKAAYHRS LNEWHPQVFHFIS+ YC
Sbjct: 121 RPPNPKAAYHRSRLNEWHPQVFHFISD-YC 148

[Close]

BLAST of CsaV3_1G003140 vs. NCBI nr
Match: PON92695.1 (hypothetical protein TorRG33x02_115550 [Trema orientale])

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+A EISDKK I G HP+RITR+P GGP EFH +V+EAEK S PLK   +
Sbjct: 12  KFGISFIVPDRLAVEISDKKTIVGKHPMRITRIPLGGPTEFHRVVEEAEKESRPLKKYHE 71

Query: 117 ---GKPPNPKAAYHRSCLNEWHPQVFH 141
                 PNPK AYHRS +N+WHP+VF+
Sbjct: 72  NVMATGPNPKKAYHRSHMNDWHPKVFY 98

[Close]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL
Match: A0A0A0LRV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL
Match: A0A5D3DX07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00030 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 121/146 (82.88%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKN K KKRD+ARTIAK+FR         VL EKLEE SKERMEVR LH+IKFGI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFR---------VLKEKLEEASKERMEVRTLHKIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEI+DKK ISGL PLRITRVP GGPMEFHEIVKEAEKGSAPLKN +KGKPP
Sbjct: 61  SFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSY 147
           NPK AYHRSC NEWHPQVFHFISNSY
Sbjct: 121 NPKTAYHRSCFNEWHPQVFHFISNSY 137

[Close]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL
Match: A0A5A7UWL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003090 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 120/146 (82.19%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKN K KKRD+ARTIAKRFR         VL EKLEE SKERMEVR +H+IKFGI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFR---------VLKEKLEEASKERMEVRTVHQIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRM TEI+DKK ISGL PLRITRVP GGPMEFHEIVKEAEKGSAPLKN +KGKPP
Sbjct: 61  SFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNHKKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSY 147
           NPK AYHRSC NEWHPQVFHFISNSY
Sbjct: 121 NPKTAYHRSCFNEWHPQVFHFISNSY 137

[Close]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL
Match: A0A2P5F4J0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+A EISDKK I G HP+RITR+P GGP EFH +V+EAEK S PLK   +
Sbjct: 12  KFGISFIVPDRLAVEISDKKTIVGKHPMRITRIPLGGPTEFHRVVEEAEKESRPLKKYHE 71

Query: 117 ---GKPPNPKAAYHRSCLNEWHPQVFH 141
                 PNPK AYHRS +N+WHP+VF+
Sbjct: 72  NVMATGPNPKKAYHRSHMNDWHPKVFY 98

[Close]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL
Match: A0A2P5AKC8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+A EISDKK I G HP+RITR+P GGP EFH +V+EAEK S PLK   +
Sbjct: 12  KFGISFIVPDRLAVEISDKKTIVGNHPMRITRIPSGGPTEFHRVVEEAEKESRPLKKYNE 71

Query: 117 ---GKPPNPKAAYHRSCLNEWHPQVFH 141
                 PNPK AYHRS +N+WHP+VF+
Sbjct: 72  NVMATRPNPKKAYHRSHMNDWHPKVFY 98

The following BLAST results are available for this feature:

BLAST of CsaV3_1G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63749.1	3.5e-82	100.00	hypothetical protein Csa_013996 [Cucumis sativus]	[more]
TYK28377.1	2.7e-58	82.88	hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa]	[more]
KAA0058005.1	4.6e-58	82.19	hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa]	[more]
KAG6589576.1	1.9e-48	74.67	hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON92695.1	2.8e-23	63.22	hypothetical protein TorRG33x02_115550 [Trema orientale]	[more]

BLAST of CsaV3_1G003140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRV9	1.7e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1	[more]
A0A5D3DX07	1.3e-58	82.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UWL1	2.2e-58	82.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2P5F4J0	1.3e-23	63.22	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV...	[more]
A0A2P5AKC8	2.3e-23	63.22	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE...	[more]

BLAST of CsaV3_1G003140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G003140.1	CsaV3_1G003140.1	mRNA