CsaV3_1G003110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G003110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ABC transmembrane type-1 domain-containing protein
Location	chr1: 1936190 .. 1936875 (+)
RNA-Seq Expression	CsaV3_1G003110
Synteny	CsaV3_1G003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAAAGGGATTTTTGCAATTTCGATTGCCAGTACAATGGCATCCAGCGATACAGGGCAGTTGATTGGTTTTACAGCCACAACGGTGGTGCTTGCATGAACTATTTTCACAGTTGCAAACAGATCTCTCTTGCCCTTGGGCTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTGCTTGTTGGACTTCTTCCTCCTCCTGCTTTTCTTCTTCCTGGACTTGCACTTTCTCTTCTTCTTGCTGGACTTGCACTTGCTCTTTCTCCTCCTCCTCACTCTCTGCCTCCTCCTCATTCTCTGCTTCCTCCTTCTCATTCTCATTCTCTACCTCCTCTTTCTCATTCTCATTCTCTACCTCCTCTTTCTCATTCTCATTCTCTGCCTCCTCCTCCTCATTCTCATTCTCTGCCTCCTCCTCCTCCTCATTCTCATTCTCATTCTCTGCCTCCTCCTCCTCTTCCTCATTCTCATCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCTTCCTCTTCAATTATTTTCTTCTTCCATAAAGGAATTCTTCTTTTCCAGAAAGGCATTCTTCTTTCTTTTCTTTCTCTTTTGTTTTGAATAA

mRNA sequence

ATGTGTAAAGGGATTTTTGCAATTTCGATTGCCAGTACAATGGCATCCAGCGATACAGGGCAGTTGATTGGTTTTACAGCCACAACGGTGATCTCTCTTGCCCTTGGGCTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTGCTTGTTGGACTTCTTCCTCCTCCTGCTTTTCTTCTTCCTGGACTTGCACTTTCTCTTCTTCTTGCTGGACTTGCACTTGCTCTTTCTCCTCCTCCTCACTCTCTGCCTCCTCCTCCTCCTCTTTCTCATTCTCATTCTCTGCCTCCTCCTCCTCATTCTCATTCTCTGCCTCCTCCTCCTCCTCATTCTCATTCTCATTCTCTGCCTCCTCCTCCTCTTCCTCATTCTCATCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCTTCCTCTTCAATTATTTTCTTCTTCCATAAAGGAATTCTTCTTTTCCAGAAAGGCATTCTTCTTTCTTTTCTTTCTCTTTTGTTTTGAATAA

Coding sequence (CDS)

ATGTGTAAAGGGATTTTTGCAATTTCGATTGCCAGTACAATGGCATCCAGCGATACAGGGCAGTTGATTGGTTTTACAGCCACAACGGTGATCTCTCTTGCCCTTGGGCTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTTGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTCGTGGCTGTTGTGCTTGTTGGACTTCTTCCTCCTCCTGCTTTTCTTCTTCCTGGACTTGCACTTTCTCTTCTTCTTGCTGGACTTGCACTTGCTCTTTCTCCTCCTCCTCACTCTCTGCCTCCTCCTCCTCCTCTTTCTCATTCTCATTCTCTGCCTCCTCCTCCTCATTCTCATTCTCTGCCTCCTCCTCCTCCTCATTCTCATTCTCATTCTCTGCCTCCTCCTCCTCTTCCTCATTCTCATCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCTTCCTCTTCAATTATTTTCTTCTTCCATAAAGGAATTCTTCTTTTCCAGAAAGGCATTCTTCTTTCTTTTCTTTCTCTTTTGTTTTGAATAA

Protein sequence

MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGLVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHSLPPPPPLSHSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPPPPSLLPLQLFSSSIKEFFFSRKAFFFLFFLFCFE*

Homology

[Close]

BLAST of CsaV3_1G003110 vs. NCBI nr
Match: KAE8652441.1 (hypothetical protein Csa_013443 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 3.9e-75
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGLVVAVVVAVVVAVVVAVVVAVVVA 60
           MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGLVVAVVVAVVVAVVVAVVVAVVVA
Sbjct: 1   MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGLVVAVVVAVVVAVVVAVVVAVVVA 60

Query: 61  VVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHSLPPPPPLS 120
           VVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHSLPPPPPLS
Sbjct: 61  VVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHSLPPPPPLS 120

Query: 121 HSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPPPPSLLPLQLFSSSIKEFFF 180
           HSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPPPPSLLPLQLFSSSIKEFFF
Sbjct: 121 HSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPPPPSLLPLQLFSSSIKEFFF 180

Query: 181 SRKAFFFLFFLFCFE 196
           SRKAFFFLFFLFCFE
Sbjct: 181 SRKAFFFLFFLFCFE 195

[Close]

BLAST of CsaV3_1G003110 vs. NCBI nr
Match: KAG6862460.1 (hypothetical protein C0995_000006 [Termitomyces sp. Mi166#008])

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-04
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 108 PPPHSLPPPPPLSHSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPP----PP 167
           PPPH   PPPP  H H  PPPPH H  PPPPPH H    PPPP PH H PPPPP    PP
Sbjct: 306 PPPHQHQPPPP--HQHQPPPPPHQHQ-PPPPPHQHQPPPPPPPPPHQHQPPPPPQLQQPP 365

Query: 168 SLLPLQLFSSSIKE 178
           + LP    +S I++
Sbjct: 366 AHLPPPQHASQIQQ 376

[Close]

BLAST of CsaV3_1G003110 vs. ExPASy TrEMBL
Match: A0A0A0LRV3 (ABC transmembrane type-1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014410 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 5.0e-52
Identity = 187/323 (57.89%), Postives = 187/323 (57.89%), Query Frame = 0


Query: 1   MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGL----------------------- 60
           MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGL                       
Sbjct: 1   MCKGIFAISIASTMASSDTGQLIGFTATTVISLALGLVVAVVVAVVVAVVVAVVVAVVVA 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  VVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVA 120

Query: 121 ---------------------------------------------VVAVVVAVVVAVVVA 180
                                                        VVAVVVAVVVAVVVA
Sbjct: 121 VVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVAVVVA 180

Query: 181 VVVAVVVAVVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHS 196
           VVVAVVVAVVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHS
Sbjct: 181 VVVAVVVAVVVAVVVAVVVAVVVAVVLVGLLPPPAFLLPGLALSLLLAGLALALSPPPHS 240

[Close]

BLAST of CsaV3_1G003110 vs. TAIR 10
Match: AT5G48920.1 (tracheary element differentiation-related 7 )

HSP 1 Score: 42.0 bits (97), Expect = 6.6e-04
Identity = 33/60 (55.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 108 PPPHSLPPPPPLSHSHSLPPPPHSHSLPPPPPHSHSHSLPPPPLPHSHPPPPPPPPSLLP 167
           PP H  PPPPP S  H  PPPPH      PPP  + H  PPPP P+ HP  PPPPP +LP
Sbjct: 27  PPSHISPPPPPFSPPHH-PPPPHFSPPHQPPPSPYPHPHPPPPSPYPHPHQPPPPPHVLP 85

The following BLAST results are available for this feature:

BLAST of CsaV3_1G003110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652441.1	3.9e-75	100.00	hypothetical protein Csa_013443 [Cucumis sativus]	[more]
KAG6862460.1	3.6e-04	55.41	hypothetical protein C0995_000006 [Termitomyces sp. Mi166#008]	[more]

BLAST of CsaV3_1G003110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G003110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRV3	5.0e-52	57.89	ABC transmembrane type-1 domain-containing protein OS=Cucumis sativus OX=3659 GN...	[more]

BLAST of CsaV3_1G003110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48920.1	6.6e-04	55.00	tracheary element differentiation-related 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G003110.1	CsaV3_1G003110.1	mRNA